Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0117400 Salix brachista HOM05D006920 ORTHO05D005895 0.0e+00 1773.4 981 100.0
Potri.006G148400 Populus trichocarpa HOM05D006920 ORTHO05D005895 0.0e+00 1347.4 892 88.3
Manes.01G178200 Manihot esculenta HOM05D006920 ORTHO05D005895 1.3e-116 425.2 892 45.5
TWI63G0676 Tripterygium wilfordii HOM05D006920 ORTHO05D005895 5.6e-107 393.3 849 41.0
Atru.chr7.1617 Acer truncatum HOM05D006920 ORTHO05D005895 8.6e-100 369.4 881 39.2
Cfa003067 Carpinus fangiana HOM05D006920 ORTHO05D005895 1.9e-94 351.7 955 38.1
Haze_25928 Corylus avellana HOM05D006920 ORTHO05D005895 1.0e-92 345.9 927 38.9
QL02p062309 Quercus lobata HOM05D006920 ORTHO05D005895 1.1e-86 325.9 960 36.2
Ciclev10007413m.g Citrus clementina HOM05D006920 ORTHO05D005895 3.5e-85 320.9 857 38.2
CiPaw.03G213600 Carya illinoinensis HOM05D006920 ORTHO05D005895 1.6e-74 285.4 955 35.8
Prupe.7G207100 Prunus persica HOM05D006920 ORTHO05D005895 6.9e-73 280.0 871 35.9
Duzib150G1610 Durio zibethinus HOM05D006920 ORTHO05D005895 1.3e-66 259.2 971 33.3
Thecc.09G086800 Theobroma cacao HOM05D006920 ORTHO05D005895 9.0e-65 253.1 965 34.7
GSVIVG01015184001 Vitis vinifera HOM05D006920 ORTHO05D005895 3.8e-63 247.7 716 38.8
Gorai.009G032200 Gossypium raimondii HOM05D006920 ORTHO05D005895 2.5e-59 235.0 1061 32.1
Dinv42334 Davidia involucrata HOM05D006920 ORTHO05D005895 2.1e-58 231.9 660 36.5
TAR383G0297 Trochodendron aralioides HOM05D006920 ORTHO05D005895 2.1e-58 231.9 841 33.5
MD15G1209300 Malus domestica HOM05D006920 ORTHO05D005895 1.4e-57 229.2 551 37.2
ClCG11G016050 Citrullus lanatus HOM05D006920 ORTHO05D005895 2.9e-55 221.5 907 32.4
RcHm_v2.0_Chr3g0459471 Rosa chinensis HOM05D006920 ORTHO05D005895 6.5e-55 220.3 903 31.2
CANSAT56G3092 Cannabis sativa HOM05D006920 ORTHO05D005895 7.4e-51 206.8 887 33.0
Dinv36779 Davidia involucrata HOM05D006920 ORTHO05D005895 9.6e-51 206.5 458 44.8
Actinidia25244 Actinidia chinensis HOM05D006920 ORTHO05D005895 6.3e-50 203.8 796 33.5
CsaV3_4G027920 Cucumis sativus L. HOM05D006920 ORTHO05D005895 1.4e-49 202.6 904 30.5
Sed0019505 Sechium edule HOM05D006920 ORTHO05D005895 6.9e-49 200.3 510 40.2
Gohir.D05G032000 Gossypium hirsutum HOM05D006920 ORTHO05D005895 7.6e-48 196.8 1035 31.1
RcHm_v2.0_Chr2g0093651 Rosa chinensis HOM05D006920 ORTHO05D005895 7.6e-48 196.8 906 29.4
COL.COLO4_18185 Corchorus olitorius HOM05D006920 ORTHO05D005895 1.3e-47 196.1 911 30.2
PGR142G4106 Punica granatum HOM05D006920 ORTHO05D005895 5.5e-46 190.7 875 29.7
FAN26G1238 Fragaria x ananassa HOM05D006920 ORTHO05D005895 2.1e-45 188.7 732 35.4
Gohir.A05G030600 Gossypium hirsutum HOM05D006920 ORTHO05D005895 2.7e-45 188.3 1033 30.9
FAN26G3372 Fragaria x ananassa HOM05D006920 ORTHO05D005895 4.6e-45 187.6 736 36.1
Hma1.2p1_0169F.1_g074930 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 6.7e-44 183.7 872 31.8
Oeu064585.1 Olea europaea HOM05D006920 ORTHO05D005895 1.1e-43 183.0 754 33.6
FvH4_1g07770 Fragaria vesca HOM05D006920 ORTHO05D005895 4.3e-43 181.0 733 34.2
FAN28G2753 Fragaria x ananassa HOM05D006920 ORTHO05D005895 9.7e-43 179.9 736 35.6
MELO3C010521.2 Cucumis melo HOM05D006920 ORTHO05D005895 1.3e-42 179.5 747 29.9
FAN23G0431 Fragaria x ananassa HOM05D006920 ORTHO05D005895 1.3e-42 179.5 732 35.4
DCAR_015050 Daucus carota HOM05D006920 ORTHO05D005895 9.1e-41 173.3 754 30.6
Nn6g35509 Nelumbo nucifera HOM05D006920 ORTHO05D005895 9.1e-41 173.3 725 32.8
Cc06_g11560 Coffea canephora HOM05D006920 ORTHO05D005895 5.9e-40 170.6 687 31.3
FAN19G0513 Fragaria x ananassa HOM05D006920 ORTHO05D005895 1.0e-39 169.9 756 32.7
Sed0003269 Sechium edule HOM05D006920 ORTHO05D005895 1.3e-39 169.5 880 28.6
Eucgr.C01704 Eucalyptus grandis HOM05D006920 ORTHO05D005895 1.9e-38 165.6 492 41.5
arahy.Tifrunner.gnm1.ann1.IGMF9F Arachis hypogaea HOM05D006920 ORTHO05D005895 2.5e-38 165.2 888 31.1
DCAR_031337 Daucus carota HOM05D006920 ORTHO05D005895 5.5e-38 164.1 756 31.1
Glyma.14G213000 Glycine max HOM05D006920 ORTHO05D005895 1.6e-37 162.5 690 32.8
MSTRG.19500 Avicennia marina HOM05D006920 ORTHO05D005895 2.7e-37 161.8 854 30.3
arahy.Tifrunner.gnm1.ann1.50MPSE Arachis hypogaea HOM05D006920 ORTHO05D005895 4.6e-37 161.0 815 31.8
Medtr5g096500 Medicago truncatula HOM05D006920 ORTHO05D005895 1.4e-36 159.5 824 29.1
Nitab4.5_0005104g0050 Nicotiana tabacum HOM05D006920 ORTHO05D005895 1.4e-36 159.5 764 30.8
Psat5g132560 Pisum sativum HOM05D006920 ORTHO05D005895 1.8e-36 159.1 672 33.6
Nitab4.5_0008077g0010 Nicotiana tabacum HOM05D006920 ORTHO05D005895 3.0e-36 158.3 762 30.6
Rhsim05G0018400 Rhododendron simsii HOM05D006920 ORTHO05D005895 8.8e-36 156.8 842 31.9
Lj6g0023447 Lotus japonicus HOM05D006920 ORTHO05D005895 7.4e-35 153.7 422 41.2
Lj3g0019860 Lotus japonicus HOM05D006920 ORTHO05D005895 9.7e-35 153.3 422 40.8
Sc08g0008560 Simmondsia chinensis HOM05D006920 ORTHO05D005895 1.7e-34 152.5 361 36.3
TPR.G14423 Trifolium pratense HOM05D006920 ORTHO05D005895 1.7e-34 152.5 584 29.8
vmacro17256 Vaccinium macrocarpon HOM05D006920 ORTHO05D005895 2.4e-33 148.7 691 30.5
Hma1.2p1_0476F.1_g160830 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 2.6e-32 145.2 693 31.3
Oeu000320.3 Olea europaea HOM05D006920 ORTHO05D005895 4.5e-32 144.4 464 34.3
VMungo0331G1985 Vigna mungo HOM05D006920 ORTHO05D005895 7.2e-30 137.1 628 31.7
SalBow6G1737 Salvia bowleyana HOM05D006920 ORTHO05D005895 4.7e-29 134.4 433 36.7
SGA_v2.0_scaffold4G02308 Striga asiatica HOM05D006920 ORTHO05D005895 4.4e-27 127.9 791 28.6
Ca_12179_v3 Cicer arietinum L. HOM05D006920 ORTHO05D005895 7.4e-27 127.1 853 25.8
Peaxi162Scf00028g00415 Petunia axillaris HOM05D006920 ORTHO05D005895 2.2e-26 125.6 773 29.2
Lalb_Chr25g0278561 Lupinus albus HOM05D006920 ORTHO05D005895 2.8e-26 125.2 441 37.4
Migut.J00581 Erythranthe guttata HOM05D006920 ORTHO05D005895 4.8e-26 124.4 474 35.7
MBI04_g34755_MAGBIO Magnolia biondii HOM05D006920 ORTHO05D005895 6.3e-26 124.0 314 40.1
Phvul.010G094400 Phaseolus vulgaris HOM05D006920 ORTHO05D005895 6.3e-26 124.0 253 45.8
Gohir.A10G064850 Gossypium hirsutum HOM05D006920 ORTHO05D005895 1.4e-25 122.9 518 30.7
EL10Ac8g19187 Beta vulgaris HOM05D036879 ORTHO05D005895 1.8e-25 122.5 532 34.6
Lj4A292T33 Lonicera japonica HOM05D006920 ORTHO05D005895 5.3e-25 120.9 467 35.1
ECA233G4205 Erigeron canadensis HOM05D006920 ORTHO05D005895 3.5e-24 118.2 450 35.8
Sp6g18630 Schrenkiella parvula HOM05D010535 ORTHO05D005895 2.9e-23 115.2 321 38.6
Hund06669 Selenicereus undatus HOM05D006920 ORTHO05D005895 4.2e-22 111.3 551 31.9
CAN.G610.81 Capsicum annuum HOM05D006920 ORTHO05D005895 5.5e-22 110.9 458 37.1
AUR62033943 Chenopodium quinoa HOM05D036879 ORTHO05D005895 1.5e-19 102.8 434 32.0
Eucgr.C01628 Eucalyptus grandis HOM05D006920 ORTHO05D005895 2.6e-19 102.1 393 31.3
AT5G56930 Arabidopsis thaliana HOM05D010535 ORTHO05D005895 3.7e-18 98.2 310 34.8
HanXRQChr05g0128971 Helianthus annuus HOM05D006920 ORTHO05D005895 1.1e-17 96.7 332 39.8
HanXRQChr03g0060321 Helianthus annuus HOM05D006920 ORTHO05D005895 1.4e-17 96.3 332 39.5
PGSC0003DMG400014565 Solanum tuberosum HOM05D006920 ORTHO05D005895 1.8e-17 95.9 699 26.5
unitig_699.g19418 Utricularia gibba HOM05D006920 ORTHO05D005895 3.1e-17 95.1 115 67.0
Carub.0008s1741 Capsella rubella HOM05D010535 ORTHO05D005895 4.1e-17 94.7 276 35.9
Glyma.18G092000 Glycine max HOM05D006920 ORTHO05D005895 4.1e-17 94.7 347 31.4
HPP92_005499 Vanilla planifolia HOM05D006920 ORTHO05D005895 5.3e-17 94.4 463 27.9
Solyc05g009350.4 Solanum lycopersicum HOM05D006920 ORTHO05D005895 7.0e-17 94.0 422 33.2
BcaB05g22299 Brassica carinata HOM05D010535 ORTHO05D005895 1.2e-16 93.2 345 31.6
Cpa.g.sc28.161 Carica papaya HOM05D006920 ORTHO05D005895 2.0e-16 92.4 245 33.9
CDE04G1224 Ceratophyllum demersum HOM05D006920 ORTHO05D005895 2.0e-16 92.4 337 36.8
Aqoxy7G02156 Aquilegia oxysepala HOM05D006920 ORTHO05D005895 2.7e-16 92.0 270 39.6
BcaC03g14196 Brassica carinata HOM05D010535 ORTHO05D005895 2.7e-16 92.0 298 37.9
C02p14780 Brassica napus HOM05D010535 ORTHO05D005895 2.7e-16 92.0 298 37.9
BolC2t07607H Brassica oleracea HOM05D010535 ORTHO05D005895 2.7e-16 92.0 298 37.9
CARHR270670 Cardamine hirsuta HOM05D010535 ORTHO05D005895 3.5e-16 91.7 238 46.6
ATR0178G033 Amborella trichopoda HOM05D006920 ORTHO05D005895 4.5e-16 91.3 228 36.8
PSO063G3291 Papaver somniferum HOM05D006920 ORTHO05D005895 7.7e-16 90.5 229 40.6
Medtr3g053340 Medicago truncatula HOM05D006920 ORTHO05D005895 1.3e-15 89.7 783 25.8
A02p08870 Brassica napus HOM05D010535 ORTHO05D005895 3.8e-15 88.2 345 34.2
BraA02t05956Z Brassica rapa HOM05D010535 ORTHO05D005895 3.8e-15 88.2 345 34.2
CSS0014816 Camellia sinensis var. sinensis HOM05D041308 ORTHO05D005895 8.5e-15 87.0 269 32.0
CSS0039023 Camellia sinensis var. sinensis HOM05D041308 ORTHO05D005895 8.5e-15 87.0 269 32.0
PSO832G2112 Papaver somniferum HOM05D006920 ORTHO05D005895 1.9e-14 85.9 207 45.9
CDE06G2477 Ceratophyllum demersum HOM05D002968 ORTHO05D005895 4.2e-14 84.7 214 47.7
Aa31LG11G5930 Aethionema arabicum HOM05D010535 ORTHO05D005895 1.2e-13 83.2 281 31.0
AL8G32790 Arabidopsis lyrata HOM05D010535 ORTHO05D005895 1.2e-13 83.2 281 33.8
PSO384G1468 Papaver somniferum HOM05D006920 ORTHO05D005895 4.7e-13 81.3 214 40.7
HanXRQChr10g0310341 Helianthus annuus HOM05D001214 ORTHO05D001029 8.0e-13 80.5 76 57.9
SEGI_28908 Sequoiadendron giganteum HOM05D006920 ORTHO05D005895 8.0e-13 80.5 129 48.1
Migut.J00579 Erythranthe guttata HOM05D006920 ORTHO05D005895 1.0e-12 80.1 86 65.1
Thhalv10012834m.g Eutrema salsugineum HOM05D010535 ORTHO05D005895 1.0e-12 80.1 347 33.1
CSS0019085 Camellia sinensis var. sinensis HOM05D041308 ORTHO05D005895 1.8e-12 79.3 257 31.1
CSS0016721 Camellia sinensis var. sinensis HOM05D037884 ORTHO05D005895 1.2e-11 76.6 392 29.6
CSS0038644 Camellia sinensis var. sinensis HOM05D037884 ORTHO05D005895 1.2e-11 76.6 392 29.6
Sopen05g005130 Solanum pennellii HOM05D006920 ORTHO05D005895 1.2e-11 76.6 685 25.0
ECA240G4801 Erigeron canadensis HOM05D006920 ORTHO05D005895 1.5e-11 76.3 55 61.8
Ah.12g064230 Amaranthus hybridus HOM05D006920 ORTHO05D005895 3.4e-11 75.1 52 69.2
Lsat_1_v5_gn_7_36681 Lactuca sativa HOM05D006920 ORTHO05D005895 7.5e-11 73.9 143 37.8
Aa31LG11G5970 Aethionema arabicum HOM05D010535 ORTHO05D005895 1.7e-10 72.8 100 45.0
Mapoly0131s0021 Marchantia polymorpha HOM05D006920 ORTHO05D005895 8.3e-10 70.5 195 36.4
Pp3c19_22680 Physcomitrium patens HOM05D006920 ORTHO05D005895 7.0e-09 67.4 132 46.2
Zm00001eb160100 Zea mays HOM05D006920 ORTHO05D005895 1.2e-08 66.6 191 45.5
CSS0027095 Camellia sinensis var. sinensis HOM05D037884 ORTHO05D005895 1.6e-08 66.2 387 29.7
AagrBONN_evm.TU.Sc2ySwM_228.2245 Anthoceros agrestis HOM05D006920 ORTHO05D005895 2.0e-08 65.9 89 55.1
HanXRQChr14g0436791 Helianthus annuus HOM05D006920 ORTHO05D005895 2.9e-07 62.0 58 46.6
AUR62029046 Chenopodium quinoa HOM05D036879 ORTHO05D005895 7.2e-06 57.4 365 28.5


User provided reference genes

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