Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0056300 Salix brachista HOM05D003999 ORTHO05D005219 0.0e+00 1712.2 853 100.0
Potri.006G075400 Populus trichocarpa HOM05D003999 ORTHO05D005219 0.0e+00 1421.4 861 85.5
Potri.018G142300 Populus trichocarpa HOM05D003999 ORTHO05D005219 9.4e-244 847.4 852 56.7
Sabra18G0116200 Salix brachista HOM05D003999 ORTHO05D005219 6.3e-240 834.7 704 65.5
Cfa013453 Carpinus fangiana HOM05D003999 ORTHO05D005219 4.6e-142 509.6 522 54.4
Gorai.010G217300 Gossypium raimondii HOM05D003999 ORTHO05D005219 1.3e-139 501.5 870 42.1
Gohir.D06G185700 Gossypium hirsutum HOM05D003999 ORTHO05D005219 2.4e-138 497.3 870 41.8
Gohir.A06G176100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 3.1e-138 496.9 854 41.8
Manes.06G019800 Manihot esculenta HOM05D003999 ORTHO05D005219 4.1e-138 496.5 488 55.9
CiPaw.07G197100 Carya illinoinensis HOM05D003999 ORTHO05D005219 7.2e-127 459.1 515 52.4
Atru.chr7.755 Acer truncatum HOM05D003999 ORTHO05D005219 1.2e-126 458.4 493 53.3
Atru.chr7.776 Acer truncatum HOM05D003999 ORTHO05D005219 1.2e-126 458.4 493 53.3
Duzib114G0910 Durio zibethinus HOM05D003999 ORTHO05D005219 1.1e-124 451.8 504 51.0
Thecc.10G174600 Theobroma cacao HOM05D003999 ORTHO05D005219 1.5e-124 451.4 497 51.9
FAN13G0316 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.3e-123 448.4 670 44.6
Prupe.1G075400 Prunus persica HOM05D003999 ORTHO05D005219 2.8e-123 447.2 679 43.2
Actinidia29951 Actinidia chinensis HOM05D003999 ORTHO05D005219 4.8e-123 446.4 496 49.2
FAN04G0885 Fragaria x ananassa HOM05D003999 ORTHO05D005219 4.1e-122 443.4 668 44.9
FAN18G4269 Fragaria x ananassa HOM05D003999 ORTHO05D005219 4.1e-122 443.4 629 46.3
Ciclev10010423m.g Citrus clementina HOM05D003999 ORTHO05D005219 3.5e-121 440.3 480 50.2
Dinv41175 Davidia involucrata HOM05D003999 ORTHO05D005219 1.0e-120 438.7 551 47.4
Gorai.011G210800 Gossypium raimondii HOM05D003999 ORTHO05D005219 5.5e-119 433.0 514 48.6
COL.COLO4_08503 Corchorus olitorius HOM05D003999 ORTHO05D005219 4.7e-118 429.9 507 48.3
Gohir.D10G188000 Gossypium hirsutum HOM05D003999 ORTHO05D005219 1.5e-116 424.9 492 49.8
Haze_22020 Corylus avellana HOM05D003999 ORTHO05D005219 5.7e-116 422.9 403 57.8
RcHm_v2.0_Chr7g0219501 Rosa chinensis HOM05D003999 ORTHO05D005219 5.7e-116 422.9 593 45.5
TWI63G1413 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 1.4e-114 418.3 556 44.8
FvH4_5g27730 Fragaria vesca HOM05D003999 ORTHO05D005219 2.0e-113 414.5 670 43.4
Actinidia38494 Actinidia chinensis HOM05D003999 ORTHO05D005219 3.5e-113 413.7 516 46.1
FAN08G2100 Fragaria x ananassa HOM05D003999 ORTHO05D005219 8.5e-112 409.1 670 42.8
Gohir.A10G181100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 1.5e-111 408.3 538 45.7
Rhsim03G0266100 Rhododendron simsii HOM05D003999 ORTHO05D005219 1.0e-109 402.1 502 46.6
Duzib106G1697 Durio zibethinus HOM05D003999 ORTHO05D005219 4.0e-109 400.2 401 52.6
TWI34G1954 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 4.0e-109 400.2 486 47.3
MD13G1241700 Malus domestica HOM05D003999 ORTHO05D005219 1.8e-106 391.3 459 48.6
TAR625G1146 Trochodendron aralioides HOM05D003999 ORTHO05D005219 2.9e-104 384.0 468 47.2
Hma1.2p1_1326F.1_g275830 Hydrangea macrophylla HOM05D003999 ORTHO05D005219 1.5e-103 381.7 517 45.5
vmacro05997 Vaccinium macrocarpon HOM05D003999 ORTHO05D005219 7.2e-103 379.4 505 44.8
Sed0015737 Sechium edule HOM05D003999 ORTHO05D005219 1.2e-102 378.6 458 48.7
MELO3C017428.2 Cucumis melo HOM05D003999 ORTHO05D005219 2.1e-102 377.9 411 50.9
CsaV3_1G031880 Cucumis sativus L. HOM05D003999 ORTHO05D005219 1.0e-101 375.6 417 50.8
Sed0001699 Sechium edule HOM05D003999 ORTHO05D005219 1.0e-101 375.6 489 45.2
Nn8g40781 Nelumbo nucifera HOM05D003999 ORTHO05D005219 8.8e-101 372.5 542 43.2
MD16G1248600 Malus domestica HOM05D003999 ORTHO05D005219 1.4e-98 365.2 475 46.1
TAR383G0399 Trochodendron aralioides HOM05D003999 ORTHO05D005219 1.4e-98 365.2 469 46.5
Lj1g0014223 Lotus japonicus HOM05D003999 ORTHO05D005219 1.7e-96 358.2 464 45.7
TAR626G1281 Trochodendron aralioides HOM05D003999 ORTHO05D005219 1.1e-95 355.5 484 46.7
Eucgr.C02221 Eucalyptus grandis HOM05D003999 ORTHO05D005219 4.2e-95 353.6 450 43.8
MSTRG.26544 Avicennia marina HOM05D003999 ORTHO05D005219 5.2e-93 346.7 477 42.6
Lalb_Chr11g0061221 Lupinus albus HOM05D003999 ORTHO05D005219 1.5e-92 345.1 446 46.4
Sc08g0004740 Simmondsia chinensis HOM05D003999 ORTHO05D005219 4.4e-92 343.6 449 45.4
Ca_15280_v3 Cicer arietinum L. HOM05D003999 ORTHO05D005219 9.8e-92 342.4 479 44.3
Psat5g048320 Pisum sativum HOM05D003999 ORTHO05D005219 2.9e-91 340.9 482 44.8
Peaxi162Scf00670g00347 Petunia axillaris HOM05D003999 ORTHO05D005219 1.4e-90 338.6 580 38.1
Glyma.04G001900 Glycine max HOM05D003999 ORTHO05D005219 2.4e-90 337.8 496 42.3
Cc06_g20850 Coffea canephora HOM05D003999 ORTHO05D005219 2.0e-89 334.7 451 43.0
Aqoxy7G02806 Aquilegia oxysepala HOM05D003999 ORTHO05D005219 4.6e-89 333.6 549 39.5
Glyma.06G001400 Glycine max HOM05D003999 ORTHO05D005219 4.6e-89 333.6 482 42.5
Hund06701 Selenicereus undatus HOM05D003999 ORTHO05D005219 1.1e-87 328.9 508 41.9
arahy.Tifrunner.gnm1.ann1.K74ZDU Arachis hypogaea HOM05D003999 ORTHO05D005219 5.6e-87 326.6 491 42.4
VMungo1309G0585 Vigna mungo HOM05D003999 ORTHO05D005219 8.0e-86 322.8 468 41.5
CiPaw.08G032500 Carya illinoinensis HOM05D003999 ORTHO05D005219 3.1e-85 320.9 440 46.4
Phvul.009G117100 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 4.0e-85 320.5 365 47.4
TPR.G6349 Trifolium pratense HOM05D003999 ORTHO05D005219 1.5e-84 318.5 333 51.1
arahy.Tifrunner.gnm1.ann1.M9AABA Arachis hypogaea HOM05D003999 ORTHO05D005219 2.6e-84 317.8 500 41.8
DCAR_020148 Daucus carota HOM05D003999 ORTHO05D005219 2.2e-83 314.7 489 41.5
CSS0024594 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 9.2e-82 309.3 454 43.0
Migut.L01882 Erythranthe guttata HOM05D003999 ORTHO05D005219 6.0e-81 306.6 465 39.8
SGA_v2.0_scaffold231G43410 Striga asiatica HOM05D003999 ORTHO05D005219 6.6e-80 303.1 342 48.0
Sopen02g019140 Solanum pennellii HOM05D003999 ORTHO05D005219 1.9e-79 301.6 488 40.2
Medtr3g100350 Medicago truncatula HOM05D003999 ORTHO05D005219 3.3e-79 300.8 473 41.0
Nitab4.5_0001225g0140 Nicotiana tabacum HOM05D003999 ORTHO05D005219 5.6e-79 300.1 461 41.4
CAN.G79.26 Capsicum annuum HOM05D003999 ORTHO05D005219 4.7e-78 297.0 493 39.4
DCAR_014666 Daucus carota HOM05D003999 ORTHO05D005219 1.5e-76 292.0 421 43.2
AUR62027455 Chenopodium quinoa HOM05D003999 ORTHO05D005219 2.0e-76 291.6 496 39.3
EL10Ac8g19270 Beta vulgaris HOM05D003999 ORTHO05D005219 3.4e-76 290.8 515 39.0
Actinidia27131 Actinidia chinensis HOM05D003999 ORTHO05D005219 7.5e-76 289.7 335 49.0
Nitab4.5_0001583g0100 Nicotiana tabacum HOM05D003999 ORTHO05D005219 2.2e-75 288.1 498 38.6
ECA240G0372 Erigeron canadensis HOM05D003999 ORTHO05D005219 1.4e-74 285.4 489 38.2
AUR62031249 Chenopodium quinoa HOM05D003999 ORTHO05D005219 7.1e-74 283.1 501 38.9
MBI16_g05835_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 6.0e-73 280.0 340 46.2
MBI13_g34042_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 1.5e-71 275.4 434 40.1
Solyc02g069980.4 Solanum lycopersicum HOM05D003999 ORTHO05D005219 1.9e-71 275.0 524 38.2
unitig_8.g4939 Utricularia gibba HOM05D003999 ORTHO05D005219 2.1e-70 271.6 578 34.3
Migut.J00798 Erythranthe guttata HOM05D003999 ORTHO05D005219 2.6e-68 264.6 344 46.8
PSO170G0656 Papaver somniferum HOM05D003999 ORTHO05D005219 7.6e-68 263.1 387 41.3
Cc00_g03720 Coffea canephora HOM05D003999 ORTHO05D005219 9.9e-68 262.7 411 39.4
THA.LOC104814650 Tarenaya hassleriana HOM05D003999 ORTHO05D005219 1.7e-67 261.9 354 43.8
unitig_578.g16064 Utricularia gibba HOM05D003999 ORTHO05D005219 4.9e-67 260.4 449 37.0
DCAR_018034 Daucus carota HOM05D003999 ORTHO05D005219 1.9e-66 258.5 434 38.2
Haze_18974 Corylus avellana HOM05D003999 ORTHO05D005219 1.9e-63 248.4 448 35.5
HanXRQChr09g0244721 Helianthus annuus HOM05D003999 ORTHO05D005219 1.2e-62 245.7 401 39.2
Ciclev10008331m.g Citrus clementina HOM05D003999 ORTHO05D005219 1.6e-62 245.4 447 35.6
Lsat_1_v5_gn_7_51121 Lactuca sativa HOM05D003999 ORTHO05D005219 6.2e-62 243.4 350 42.6
ATR0681G357 Amborella trichopoda HOM05D003999 ORTHO05D005219 1.1e-61 242.7 470 35.7
CSS0017119 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 2.6e-60 238.0 398 40.2
SalBow5G4070 Salvia bowleyana HOM05D003999 ORTHO05D005219 7.6e-60 236.5 465 37.2
Haze_18980 Corylus avellana HOM05D003999 ORTHO05D005219 1.4e-58 232.3 468 34.0
CDE06G2299 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 9.3e-58 229.6 423 35.0
Potri.006G277400 Populus trichocarpa HOM05D003999 ORTHO05D005219 1.1e-55 222.6 304 39.5
Os04g0425100 Oryza sativa ssp. japonica HOM05D003999 ORTHO05D005219 2.1e-54 218.4 354 39.0
CDE02G3353 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 8.1e-54 216.5 423 35.5
Thecc.09G004800 Theobroma cacao HOM05D003999 ORTHO05D005219 8.1e-54 216.5 393 35.1
Sp3g32620 Schrenkiella parvula HOM05D003999 ORTHO05D005219 1.1e-53 216.1 460 35.7
Carub.0003s3349 Capsella rubella HOM05D003999 ORTHO05D005219 2.4e-53 214.9 394 37.8
C09p14530 Brassica napus HOM05D003999 ORTHO05D005219 3.1e-53 214.5 255 46.3
Thhalv10022602m.g Eutrema salsugineum HOM05D003999 ORTHO05D005219 9.0e-53 213.0 347 38.6
Zm00001eb002000 Zea mays HOM05D003999 ORTHO05D005219 1.5e-52 212.2 312 39.1
BolC9t54356H Brassica oleracea HOM05D003999 ORTHO05D005219 2.0e-52 211.8 265 44.5
Cfa020676 Carpinus fangiana HOM05D003999 ORTHO05D005219 2.0e-52 211.8 449 33.6
BcaB07g31614 Brassica carinata HOM05D003999 ORTHO05D005219 3.4e-52 211.1 277 44.0
BcaC04g22860 Brassica carinata HOM05D003999 ORTHO05D005219 3.4e-52 211.1 265 44.2
Zm00001eb274650 Zea mays HOM05D003999 ORTHO05D005219 4.4e-52 210.7 304 41.4
AL3G49030 Arabidopsis lyrata HOM05D003999 ORTHO05D005219 8.4e-51 206.5 378 37.8
C07p03110 Brassica napus HOM05D003999 ORTHO05D005219 8.4e-51 206.5 345 38.8
BolC7t40703H Brassica oleracea HOM05D003999 ORTHO05D005219 8.4e-51 206.5 345 38.8
BcaC06g36543 Brassica carinata HOM05D003999 ORTHO05D005219 3.2e-50 204.5 345 38.3
GSVIVG01010859001 Vitis vinifera HOM05D003999 ORTHO05D005219 3.2e-50 204.5 176 55.7
ATR0626G364 Amborella trichopoda HOM05D003999 ORTHO05D005219 4.2e-50 204.1 448 33.5
PGSC0003DMG400021118 Solanum tuberosum HOM05D003999 ORTHO05D005219 5.4e-50 203.8 441 34.7
CiPaw.15G150400 Carya illinoinensis HOM05D003999 ORTHO05D005219 1.6e-49 202.2 257 40.9
BcaB03g16715 Brassica carinata HOM05D003999 ORTHO05D005219 6.0e-49 200.3 306 40.2
AT2G19260 Arabidopsis thaliana HOM05D003999 ORTHO05D005219 3.0e-48 198.0 371 37.5
A07p01530 Brassica napus HOM05D003999 ORTHO05D005219 3.0e-48 198.0 345 36.5
BraA07t27954Z Brassica rapa HOM05D003999 ORTHO05D005219 3.0e-48 198.0 345 36.5
Atru.chr7.2670 Acer truncatum HOM05D003999 ORTHO05D005219 1.9e-47 195.3 207 44.9
Oeu064556.1 Olea europaea HOM05D003999 ORTHO05D005219 3.3e-47 194.5 311 38.3
Sabra06G0215100 Salix brachista HOM05D003999 ORTHO05D005219 3.3e-47 194.5 394 32.5
CARHR109720 Cardamine hirsuta HOM05D003999 ORTHO05D005219 1.7e-43 182.2 247 42.5
ECA234G1030 Erigeron canadensis HOM05D003999 ORTHO05D005219 1.7e-43 182.2 221 43.0
Aa31LG8G16300 Aethionema arabicum HOM05D003999 ORTHO05D005219 5.1e-40 170.6 304 36.8
SEGI_29375 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 5.1e-32 144.1 443 31.6
ClCG06G013610 Citrullus lanatus HOM05D003999 ORTHO05D005219 6.7e-32 143.7 133 52.6
SMO117G0282 Selaginella moellendorffii HOM05D003999 ORTHO05D005219 2.5e-31 141.7 303 31.0
MSTRG.10441 Avicennia marina HOM05D003999 ORTHO05D005219 4.8e-30 137.5 289 36.7
Potri.018G142201 Populus trichocarpa HOM05D003999 ORTHO05D005219 2.4e-29 135.2 143 54.5
HPP92_010790 Vanilla planifolia HOM05D003999 ORTHO05D005219 2.4e-29 135.2 238 37.0
MSTRG.10442 Avicennia marina HOM05D003999 ORTHO05D005219 5.3e-29 134.0 136 51.5
SEGI_05476 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 4.5e-28 131.0 321 32.1
MBI16_g10833_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 5.9e-28 130.6 328 34.1
Sabra06G0056200 Salix brachista HOM05D003999 ORTHO05D005219 1.3e-27 129.4 227 43.6
Phvul.007G142700 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 1.1e-26 126.3 220 35.0
PGR044G2313 Punica granatum HOM05D003999 ORTHO05D005219 2.1e-25 122.1 293 36.5
Mapoly0046s0104 Marchantia polymorpha HOM05D003999 ORTHO05D005219 1.8e-24 119.0 437 27.7
GSVIVG01035550001 Vitis vinifera HOM05D003999 ORTHO05D005219 3.4e-20 104.8 86 51.2
MD06G1235600 Malus domestica HOM05D003999 ORTHO05D005219 2.9e-19 101.7 110 45.5
Prupe.5G240400 Prunus persica HOM05D003999 ORTHO05D005219 2.9e-19 101.7 125 42.4
FvH4_5g18011 Fragaria vesca HOM05D003999 ORTHO05D005219 6.1e-17 94.0 154 34.4
FAN13G0118 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.0e-16 93.2 155 37.4
FAN18G0538 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.4e-16 92.8 154 34.4
Manes.03G002401 Manihot esculenta HOM05D003999 ORTHO05D005219 1.4e-16 92.8 149 38.3
RcHm_v2.0_Chr7g0177591 Rosa chinensis HOM05D003999 ORTHO05D005219 1.1e-15 89.7 165 32.7
SEGI_17596 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 1.5e-15 89.4 250 30.4
Cfa020674 Carpinus fangiana HOM05D003999 ORTHO05D005219 1.4e-13 82.8 61 59.0
BraA09t36876Z Brassica rapa HOM05D003999 ORTHO05D005219 1.1e-10 73.2 91 42.9
A09p12320 Brassica napus HOM05D003999 ORTHO05D005219 2.1e-09 68.9 50 54.0
Carub.0003s3352 Capsella rubella HOM05D003999 ORTHO05D005219 6.7e-08 63.9 80 40.0
CAN.G481.41 Capsicum annuum HOM05D002415 ORTHO05D002522 5.7e-07 60.8 83 38.6
Cfa018415 Carpinus fangiana HOM05D004258 ORTHO05D005163 9.7e-07 60.1 88 37.5
DCAR_016655 Daucus carota HOM05D004258 ORTHO05D005163 1.3e-06 59.7 57 40.4
Atru.chr4.823 Acer truncatum HOM05D002415 ORTHO05D002522 1.7e-06 59.3 83 33.7
Haze_17646 Corylus avellana HOM05D004258 ORTHO05D005163 2.8e-06 58.5 88 37.5
MELO3C013235.2 Cucumis melo HOM05D004258 ORTHO05D005163 2.8e-06 58.5 73 34.2
FvH4_2g28030 Fragaria vesca HOM05D004258 ORTHO05D005163 3.7e-06 58.2 45 46.7
FAN24G0072 Fragaria x ananassa HOM05D004258 ORTHO05D005163 3.7e-06 58.2 45 46.7
Hma1.2p1_0159F.1_g070350 Hydrangea macrophylla HOM05D004258 ORTHO05D005163 3.7e-06 58.2 45 46.7
Nn7g38207 Nelumbo nucifera HOM05D000104 ORTHO05D006385 3.7e-06 58.2 177 27.1
PSO675G4589 Papaver somniferum HOM05D007740 ORTHO05D009757 3.7e-06 58.2 55 38.2
RcHm_v2.0_Chr6g0296911 Rosa chinensis HOM05D004258 ORTHO05D005163 3.7e-06 58.2 47 44.7
ClCG11G008920 Citrullus lanatus HOM05D004258 ORTHO05D005163 4.8e-06 57.8 70 37.1
CsaV3_7G022050 Cucumis sativus L. HOM05D004258 ORTHO05D005163 4.8e-06 57.8 73 34.2
Dinv27259 Davidia involucrata HOM05D004258 ORTHO05D005163 4.8e-06 57.8 75 34.7
FAN15G0778 Fragaria x ananassa HOM05D004258 ORTHO05D005163 4.8e-06 57.8 45 46.7
FAN15G1038 Fragaria x ananassa HOM05D004258 ORTHO05D005163 4.8e-06 57.8 45 46.7
Prupe.1G487600 Prunus persica HOM05D004258 ORTHO05D005163 4.8e-06 57.8 49 44.9
ECA238G2949 Erigeron canadensis HOM05D000104 ORTHO05D006385 6.3e-06 57.4 102 30.4
Manes.18G083535 Manihot esculenta HOM05D004258 ORTHO05D005163 6.3e-06 57.4 45 46.7
Peaxi162Scf00066g00717 Petunia axillaris HOM05D004258 ORTHO05D005163 6.3e-06 57.4 48 43.8
Sed0013494 Sechium edule HOM05D004258 ORTHO05D005163 6.3e-06 57.4 70 35.7
Atru.chr13.1596 Acer truncatum HOM05D004258 ORTHO05D005163 8.2e-06 57.0 74 37.8
Lalb_Chr11g0066231 Lupinus albus HOM05D004258 ORTHO05D005163 8.2e-06 57.0 45 46.7
vmacro00873 Vaccinium macrocarpon HOM05D004258 ORTHO05D005163 8.2e-06 57.0 46 41.3


User provided reference genes

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