Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 1.6e-175 619.4 322 100.0
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 2.4e-136 489.2 323 81.7
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 7.2e-104 381.3 305 67.5
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 1.6e-98 363.6 292 68.2
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 2.0e-98 363.2 305 63.9
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 7.7e-98 361.3 304 63.8
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 6.5e-97 358.2 319 60.5
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 6.5e-97 358.2 298 62.4
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 2.5e-96 356.3 292 65.4
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 3.2e-96 355.9 310 61.6
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 6.1e-95 351.7 303 60.4
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 1.0e-94 350.9 301 62.1
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 2.3e-94 349.7 321 59.5
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 5.2e-94 348.6 298 61.7
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 6.7e-94 348.2 333 57.1
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 4.4e-93 345.5 305 61.3
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 5.7e-93 345.1 267 65.5
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 7.5e-93 344.7 303 60.4
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 4.8e-92 342.0 301 61.1
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 6.3e-92 341.7 276 63.4
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 2.7e-90 336.3 275 63.3
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 2.7e-90 336.3 293 63.5
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 2.7e-90 336.3 266 64.7
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 3.5e-90 335.9 302 61.6
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 3.5e-90 335.9 297 59.9
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 4.5e-90 335.5 297 62.0
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 4.5e-90 335.5 301 60.5
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 5.9e-90 335.1 303 59.4
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 5.9e-90 335.1 298 59.4
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 5.9e-90 335.1 256 66.0
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 7.7e-90 334.7 305 59.7
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 1.3e-89 334.0 309 58.9
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 9.4e-88 327.8 265 61.5
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 2.1e-87 326.6 265 63.0
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 6.1e-87 325.1 371 49.9
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 8.0e-87 324.7 265 62.6
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 4.0e-86 322.4 304 56.9
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 6.8e-86 321.6 275 61.5
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 8.8e-86 321.2 264 63.6
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 5.7e-85 318.5 280 59.6
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 7.5e-85 318.2 303 56.1
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 9.8e-85 317.8 303 55.1
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 1.3e-84 317.4 290 58.3
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 4.8e-84 315.5 304 55.3
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 6.3e-84 315.1 273 57.5
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 1.8e-83 313.5 340 51.8
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 2.0e-82 310.1 310 54.2
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 2.0e-82 310.1 448 44.6
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 1.3e-81 307.4 277 58.5
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 1.3e-81 307.4 308 51.9
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 2.9e-81 306.2 271 56.5
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 3.8e-81 305.8 265 58.1
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 6.5e-81 305.1 290 56.2
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 1.5e-80 303.9 271 56.5
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 4.2e-80 302.4 308 53.6
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 4.2e-80 302.4 280 55.7
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 4.2e-80 302.4 271 56.5
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 9.4e-80 301.2 265 57.7
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 1.2e-79 300.8 292 54.8
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 2.7e-79 299.7 317 50.5
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 3.6e-79 299.3 289 55.4
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 1.0e-78 297.7 299 56.5
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.0e-77 293.5 279 55.2
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 4.4e-77 292.4 273 57.9
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 5.7e-77 292.0 327 51.7
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 2.8e-76 289.7 277 58.1
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 4.9e-76 288.9 298 55.7
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 6.3e-76 288.5 281 52.0
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 5.4e-75 285.4 326 50.9
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 9.2e-75 284.6 264 54.5
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 2.0e-74 283.5 257 54.1
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 3.5e-74 282.7 256 54.7
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 4.5e-74 282.3 305 51.1
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 5.9e-74 282.0 286 52.1
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 7.7e-74 281.6 348 46.0
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 7.7e-74 281.6 305 51.1
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 1.0e-73 281.2 331 49.2
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.3e-73 280.8 322 49.7
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 2.9e-73 279.6 297 50.8
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 2.9e-73 279.6 282 54.3
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 6.6e-73 278.5 260 53.5
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 7.3e-72 275.0 269 55.0
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 7.3e-72 275.0 300 52.0
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 4.7e-71 272.3 260 51.9
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 4.7e-71 272.3 309 49.2
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 1.8e-70 270.4 293 49.5
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 2.3e-70 270.0 293 48.8
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 4.0e-70 269.2 267 52.4
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 5.2e-70 268.9 193 71.0
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 6.8e-70 268.5 291 49.8
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 1.5e-69 267.3 267 52.1
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 2.0e-69 266.9 306 49.0
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 4.4e-69 265.8 308 47.4
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 7.5e-69 265.0 262 54.6
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 9.8e-69 264.6 302 46.7
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 2.2e-68 263.5 348 45.1
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 2.9e-68 263.1 303 49.8
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 6.4e-68 261.9 248 52.4
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 3.2e-67 259.6 264 48.9
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 7.0e-67 258.5 359 42.9
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 9.2e-67 258.1 264 48.1
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 9.2e-67 258.1 264 48.1
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 2.7e-66 256.5 269 50.6
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.7e-66 256.5 269 50.6
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 3.5e-66 256.1 269 50.6
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 6.6e-65 251.9 269 50.2
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 2.8e-63 246.5 243 56.8
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 8.9e-62 241.5 152 84.2
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.2e-61 241.1 300 46.3
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 1.7e-60 237.3 186 66.7
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 8.3e-60 235.0 192 69.3
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 8.3e-60 235.0 269 49.1
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 1.6e-58 230.7 186 65.6
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 1.0e-57 228.0 263 44.9
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 1.1e-56 224.6 222 55.9
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 1.5e-56 224.2 283 44.9
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 1.9e-56 223.8 309 46.6
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 1.1e-54 218.0 259 48.3
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 2.3e-54 216.9 217 54.4
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.9e-44 183.3 170 54.1
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.9e-43 180.6 256 43.8
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 1.9e-43 180.6 246 43.1
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 9.2e-43 178.3 272 41.2
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 8.6e-41 171.8 359 33.1
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.2e-39 167.9 182 52.2
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 2.4e-38 163.7 193 45.6
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.2e-37 161.4 190 46.3
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 1.2e-37 161.4 486 30.5
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 5.4e-35 152.5 99 73.7
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 5.4e-35 152.5 180 43.9
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.6e-34 151.0 128 54.7
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.9e-32 144.1 136 56.6
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 9.0e-30 135.2 182 42.3
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 7.6e-29 132.1 198 41.4
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 1.3e-28 131.3 178 43.3
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 8.4e-28 128.6 86 73.3
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 1.6e-26 124.4 271 31.4
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 3.5e-26 123.2 271 33.9
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 1.8e-25 120.9 313 31.3
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 6.7e-25 119.0 256 31.6
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.8e-22 110.9 101 53.5
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 4.5e-21 106.3 164 37.8
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 3.8e-20 103.2 114 47.4
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.4e-19 100.5 68 72.1
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.6e-18 97.8 61 80.3
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 2.1e-18 97.4 66 66.7
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 1.8e-17 94.4 274 27.0
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 3.3e-16 90.1 152 35.5
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 3.3e-16 90.1 152 35.5
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 4.8e-15 86.3 61 65.6
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 2.4e-14 84.0 131 35.9
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 2.0e-13 80.9 101 41.6
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 3.8e-12 76.6 120 37.5
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 1.4e-11 74.7 248 27.8
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 3.9e-09 66.6 112 39.3
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 5.7e-08 62.8 40 72.5
BcaC02g09173 Brassica carinata HOM05D004374 ORTHO05D005430 2.8e-07 60.5 71 38.0
MD15G1345500 Malus domestica HOM05D004374 ORTHO05D005430 3.7e-07 60.1 70 47.1
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 1.1e-06 58.5 146 28.8
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 1.4e-06 58.2 92 37.0


User provided reference genes

Program Settings