Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 9.6e-281 970.3 851 100.0
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 1.2e-190 671.0 868 80.0
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 1.0e-165 588.2 749 75.7
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 1.5e-124 451.4 784 59.3
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 2.5e-124 450.7 784 59.2
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 2.0e-121 441.0 574 69.5
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 5.7e-116 422.9 784 55.1
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 4.2e-111 406.8 784 63.6
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 2.2e-107 394.4 784 54.5
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 1.8e-101 374.8 588 43.7
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 1.7e-96 358.2 778 52.8
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 2.9e-96 357.5 780 54.1
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 5.5e-95 353.2 823 50.1
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 2.3e-93 347.8 430 53.0
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 5.4e-90 336.7 790 37.2
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 2.3e-88 331.3 902 42.1
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 6.6e-88 329.7 590 40.3
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 4.2e-87 327.0 587 40.5
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 1.0e-85 322.4 784 45.2
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 3.7e-83 313.9 769 53.2
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 1.7e-80 305.1 588 53.2
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 4.7e-78 297.0 593 48.4
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 8.9e-77 292.7 778 50.0
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 9.8e-76 289.3 784 52.3
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 1.7e-75 288.5 590 45.9
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 2.9e-75 287.7 784 44.5
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 6.4e-75 286.6 783 48.7
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 6.4e-75 286.6 766 43.2
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 1.6e-73 282.0 902 42.0
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 4.6e-73 280.4 389 47.6
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 3.3e-71 274.2 426 43.9
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 2.1e-70 271.6 426 43.7
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 1.1e-69 269.2 780 43.8
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 1.3e-67 262.3 732 48.9
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 6.4e-67 260.0 566 40.6
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 6.4e-67 260.0 433 46.9
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 6.4e-67 260.0 791 43.6
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 7.1e-66 256.5 427 45.7
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 9.2e-66 256.1 784 48.3
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 1.2e-65 255.8 780 31.7
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 2.7e-65 254.6 430 47.0
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 4.6e-65 253.8 433 40.6
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 6.0e-65 253.4 899 41.7
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 1.3e-64 252.3 410 48.0
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 3.9e-64 250.8 478 42.9
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 1.9e-63 248.4 424 44.6
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.9e-63 248.4 430 46.0
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 1.6e-62 245.4 902 39.2
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 4.7e-62 243.8 356 51.7
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.1e-61 242.7 433 39.0
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 1.8e-61 241.9 827 39.5
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 1.2e-60 239.2 899 40.4
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 1.5e-60 238.8 357 44.5
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.4e-58 231.5 428 38.3
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 4.1e-58 230.7 428 38.8
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 1.2e-57 229.2 437 53.8
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 3.5e-57 227.6 784 43.6
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 2.3e-56 224.9 1025 39.1
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 3.0e-56 224.6 891 40.3
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 4.3e-55 220.7 578 41.9
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 6.2e-54 216.9 833 42.6
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 1.2e-52 212.6 590 43.7
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 2.6e-52 211.5 428 37.4
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 2.6e-52 211.5 627 53.9
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 5.8e-52 210.3 427 40.0
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 1.3e-51 209.1 332 48.5
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 1.7e-51 208.8 366 41.3
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 3.2e-50 204.5 880 39.3
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 6.0e-49 200.3 784 39.8
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 1.9e-47 195.3 818 47.3
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 4.8e-46 190.7 379 53.3
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 6.2e-46 190.3 573 43.3
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 5.3e-45 187.2 433 40.9
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 1.5e-44 185.7 902 40.2
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 4.4e-44 184.1 336 39.9
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 2.2e-43 181.8 433 41.6
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 2.4e-42 178.3 580 31.9
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.2e-41 176.0 784 42.6
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.1e-41 175.3 714 44.8
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 2.3e-40 171.8 311 40.5
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 3.0e-40 171.4 878 38.2
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 3.9e-40 171.0 784 41.7
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 1.4e-37 162.5 432 38.0
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 5.3e-37 160.6 427 38.4
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 6.9e-37 160.2 561 39.4
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.5e-36 159.1 362 42.3
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.5e-36 159.1 362 42.3
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 2.0e-36 158.7 374 35.8
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.3e-35 156.0 440 31.4
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.7e-35 155.6 453 30.7
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 2.2e-35 155.2 840 30.0
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 2.9e-35 154.8 435 30.6
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 4.9e-35 154.1 357 35.9
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 6.4e-35 153.7 425 37.9
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 5.5e-34 150.6 433 37.0
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 5.5e-34 150.6 504 46.4
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 5.1e-32 144.1 430 36.0
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 8.1e-30 136.7 784 37.8
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 1.8e-29 135.6 850 36.1
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.2e-28 132.9 348 35.1
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 4.9e-27 127.5 456 43.0
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.6e-25 122.5 241 45.6
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 7.9e-25 120.2 241 45.2
Actinidia12513 Actinidia chinensis HOM05D003806 ORTHO05D004346 3.0e-24 118.2 174 44.3
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 2.5e-23 115.2 395 42.0
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 5.7e-23 114.0 401 29.9
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 2.8e-22 111.7 251 33.9
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 3.7e-22 111.3 395 35.7
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 4.8e-22 110.9 596 38.4
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 3.1e-21 108.2 410 35.4
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 5.3e-21 107.5 358 32.1
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 2.9e-19 101.7 304 38.5
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 3.8e-19 101.3 754 34.7
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 3.2e-18 98.2 167 40.1
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 5.5e-18 97.4 338 28.7
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 6.1e-17 94.0 344 35.5
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 1.8e-16 92.4 393 28.0
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 1.1e-15 89.7 354 28.0
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 7.4e-15 87.0 187 34.2
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 9.7e-15 86.7 337 29.4
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 1.8e-13 82.4 259 38.2
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 1.2e-12 79.7 239 30.5
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 3.4e-12 78.2 146 39.7
unitig_85.g27314 Utricularia gibba HOM05D003806 ORTHO05D004346 4.5e-12 77.8 99 48.5
AUR62043599 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.0e-11 76.6 193 42.5
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 2.2e-11 75.5 77 57.1
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 6.5e-11 73.9 362 25.4
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 3.2e-10 71.6 362 25.1
BraA10t42674Z Brassica rapa HOM05D003806 ORTHO05D004346 4.2e-10 71.2 345 27.8
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 6.1e-09 67.4 149 36.9
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 1.0e-08 66.6 345 27.5
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 5.1e-08 64.3 226 31.0
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 6.7e-08 63.9 53 62.3
Aa31LG1G19380 Aethionema arabicum HOM05D003806 ORTHO05D004346 6.7e-08 63.9 53 62.3
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 6.7e-08 63.9 869 37.3
MD09G1138300 Malus domestica HOM05D003806 ORTHO05D004346 8.8e-08 63.5 61 62.3
BcaC09g49104 Brassica carinata HOM05D003806 ORTHO05D004346 2.5e-07 62.0 81 49.4
Dinv29619 Davidia involucrata HOM05D003806 ORTHO05D004346 3.3e-07 61.6 53 64.2
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 3.3e-07 61.6 59 54.2
Oeu016857.1 Olea europaea HOM05D003806 ORTHO05D004346 9.7e-07 60.1 57 54.4


User provided reference genes

Program Settings