Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 0.0e+00 1613.6 1312 100.0
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 0.0e+00 1368.6 1316 86.2
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 1.3e-297 1026.9 1327 67.1
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 2.3e-297 1026.2 1327 67.0
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 8.1e-279 964.5 1326 69.2
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 9.3e-243 844.7 1352 64.0
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 1.1e-232 811.2 1320 58.9
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 6.3e-215 752.3 1379 50.0
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 2.8e-199 700.3 1382 50.5
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 1.8e-198 697.6 1319 51.0
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 6.6e-188 662.5 1533 42.5
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 2.8e-186 657.1 1107 46.3
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 5.2e-185 652.9 1328 48.7
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 3.2e-182 643.7 1325 54.8
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 5.4e-182 642.9 1380 47.3
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 3.5e-181 640.2 1379 48.4
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 1.1e-177 628.6 1385 52.7
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 1.7e-172 611.3 1325 49.4
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 8.9e-169 599.0 1371 47.2
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 2.6e-168 597.4 1299 49.7
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 1.7e-167 594.7 1381 43.4
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 4.9e-167 593.2 1380 47.9
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 6.4e-167 592.8 749 75.7
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 8.1e-162 575.9 1329 46.4
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 5.2e-161 573.2 1383 46.7
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 9.0e-161 572.4 1383 48.5
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 2.2e-159 567.8 1524 45.5
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 3.8e-159 567.0 1381 47.0
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 8.4e-159 565.8 1580 42.6
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 7.1e-158 562.8 1361 48.6
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 8.7e-156 555.8 1464 46.0
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 2.5e-155 554.3 1387 46.6
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 8.4e-151 539.3 1330 42.9
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 2.4e-150 537.7 1328 44.8
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 1.2e-149 535.4 1331 45.1
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 6.7e-148 529.6 1378 46.3
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 6.7e-148 529.6 1426 47.8
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 2.5e-147 527.7 1376 49.6
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 2.5e-147 527.7 1354 44.1
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 1.3e-143 515.4 1571 39.1
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 1.1e-142 512.3 1568 39.0
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 2.3e-140 504.6 1439 39.7
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 5.6e-139 500.0 1585 39.6
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 1.6e-138 498.4 1371 44.0
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 2.8e-138 497.7 1380 42.7
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 4.0e-137 493.8 1372 47.0
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 1.5e-136 491.9 1378 45.5
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 3.4e-136 490.7 1372 42.9
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 4.9e-135 486.9 1382 46.2
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 2.5e-134 484.6 1325 40.7
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.2e-133 482.3 1389 43.8
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 1.2e-133 482.3 1332 43.7
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 1.1e-131 475.7 1523 44.6
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 3.3e-131 474.2 1452 45.0
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 1.1e-129 469.2 1372 41.3
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.3e-127 462.2 1376 43.5
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 3.8e-127 460.7 1300 39.1
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 2.7e-125 454.5 1372 42.6
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 3.9e-124 450.7 1324 41.8
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 1.1e-123 449.1 723 44.1
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 1.5e-123 448.7 1331 38.5
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 1.5e-120 438.7 1376 41.9
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 2.0e-120 438.3 1330 46.3
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 5.0e-119 433.7 1153 39.9
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 1.2e-112 412.5 1374 44.0
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.0e-108 399.4 1389 40.6
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.0e-108 399.4 1389 40.6
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 2.3e-108 398.3 1096 44.4
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 3.9e-108 397.5 1038 51.6
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 8.8e-108 396.4 1349 41.4
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 4.4e-107 394.0 1349 40.5
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 5.7e-107 393.7 595 45.5
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 7.0e-105 386.7 1349 40.4
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 8.0e-101 373.2 1571 35.8
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 1.0e-100 372.9 1556 37.5
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 2.4e-97 361.7 1354 40.1
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 2.4e-97 361.7 1376 45.0
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 3.1e-97 361.3 1374 42.7
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 4.1e-97 360.9 1387 39.4
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 8.5e-95 353.2 1078 31.0
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 1.2e-93 349.4 1396 44.1
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 5.7e-91 340.5 1378 30.6
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 2.0e-88 332.0 304 66.1
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 2.9e-87 328.2 1078 36.2
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 3.8e-87 327.8 1141 45.2
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 6.1e-85 320.5 1321 35.7
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 1.3e-82 312.8 1395 35.1
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 9.2e-81 306.6 720 46.2
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 3.8e-79 301.2 1325 38.7
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 7.5e-75 287.0 1328 38.5
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 3.5e-72 278.1 1326 40.9
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 9.2e-65 253.4 1359 35.1
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 2.9e-58 231.9 315 46.3
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 5.4e-57 227.6 284 49.3
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 3.0e-55 221.9 1878 25.2
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 3.3e-54 218.4 291 47.8
Sabra06G0014900 Salix brachista HOM05D003806 ORTHO05D004346 1.1e-52 213.4 183 93.4
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 1.8e-52 212.6 415 39.8
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 3.1e-52 211.8 452 55.5
Actinidia12513 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.2e-51 209.9 324 45.1
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 2.6e-51 208.8 232 57.8
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 4.4e-51 208.0 1386 32.4
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 1.3e-50 206.5 496 33.7
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 9.0e-44 183.7 245 49.8
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 1.4e-41 176.4 574 30.8
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 1.9e-41 176.0 1320 24.8
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 3.0e-39 168.7 1144 31.1
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 3.0e-39 168.7 515 30.1
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 3.9e-39 168.3 1291 37.8
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 6.6e-39 167.5 377 46.4
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.4e-36 159.8 417 38.6
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 3.1e-36 158.7 416 32.9
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 3.1e-36 158.7 380 34.2
Sabra06G0015100 Salix brachista HOM05D003806 ORTHO05D004346 3.1e-36 158.7 89 93.3
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 6.9e-36 157.5 477 36.5
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 9.9e-35 153.7 384 32.6
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 1.3e-34 153.3 1355 28.6
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 2.9e-34 152.1 585 32.1
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.4e-33 149.8 445 41.8
AUR62043599 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.4e-33 149.8 445 41.8
unitig_85.g27313 Utricularia gibba HOM05D003806 ORTHO05D004346 5.4e-33 147.9 277 37.2
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 7.9e-32 144.1 423 42.3
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 3.0e-31 142.1 416 31.0
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 3.0e-31 142.1 445 40.7
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 1.5e-30 139.8 177 54.8
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 5.6e-30 137.9 321 38.3
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 2.1e-29 136.0 163 51.5
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 2.1e-29 136.0 288 38.9
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 2.8e-29 135.6 178 51.1
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 3.7e-29 135.2 227 44.1
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 1.1e-28 133.7 174 53.4
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 9.0e-28 130.6 177 50.3
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 1.2e-27 130.2 178 52.8
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 1.5e-27 129.8 377 31.3
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 2.9e-26 125.6 174 52.3
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 8.4e-26 124.0 194 46.4
Os04g0614650 Oryza sativa ssp. japonica HOM05D003806 ORTHO05D004346 4.6e-24 118.2 334 27.8
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 1.9e-22 112.8 452 44.7
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 2.8e-21 109.0 1327 28.1
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 6.2e-21 107.8 166 47.6
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 5.3e-20 104.8 450 44.4
SEGI_00522 Sequoiadendron giganteum HOM05D003806 ORTHO05D004346 1.2e-19 103.6 302 30.5
AUR62044057 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.6e-16 93.2 257 33.9
AUR62044188 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.6e-16 93.2 257 33.9
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 2.1e-16 92.8 199 37.2
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 6.1e-16 91.3 371 25.9
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 3.0e-15 89.0 999 26.5
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 6.7e-15 87.8 194 38.1
MD09G1138300 Malus domestica HOM05D003806 ORTHO05D004346 5.7e-14 84.7 101 51.5
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 4.8e-13 81.6 92 53.3
Aa31LG1G19380 Aethionema arabicum HOM05D003806 ORTHO05D004346 4.8e-13 81.6 92 53.3
BraA10t42674Z Brassica rapa HOM05D003806 ORTHO05D004346 8.2e-13 80.9 335 27.8
Zm00001eb070840 Zea mays HOM05D003806 ORTHO05D004346 9.0e-12 77.4 678 22.0
Actinidia31597 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.0e-10 73.9 123 47.2
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 1.7e-10 73.2 548 23.0
ATR0763G279 Amborella trichopoda HOM05D003806 ORTHO05D004346 3.8e-10 72.0 348 28.2
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 3.8e-10 72.0 117 44.4
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 8.5e-10 70.9 302 26.5
arahy.Tifrunner.gnm1.ann1.7R6RP5 Arachis hypogaea HOM05D003806 ORTHO05D004346 5.5e-09 68.2 89 52.8
Zm00001eb430870 Zea mays HOM05D003806 ORTHO05D004346 2.1e-08 66.2 293 27.6
C08p51770 Brassica napus HOM05D003806 ORTHO05D004346 6.1e-08 64.7 299 28.1
Cc04_g04110 Coffea canephora HOM05D003806 ORTHO05D004346 1.0e-07 63.9 57 63.2
unitig_85.g27314 Utricularia gibba HOM05D003806 ORTHO05D004346 1.0e-07 63.9 452 23.0
BraA03t11067Z Brassica rapa HOM05D003806 ORTHO05D004346 3.9e-07 62.0 315 31.4
CDE06G0039 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 3.9e-07 62.0 79 48.1
Peaxi162Scf00271g00618 Petunia axillaris HOM05D006663 ORTHO05D008269 5.1e-07 61.6 121 39.7
AUR62043600 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.1e-06 60.5 170 32.9
Oeu016857.1 Olea europaea HOM05D003806 ORTHO05D004346 1.1e-06 60.5 58 55.2
BolC8t52706H Brassica oleracea HOM05D003806 ORTHO05D004346 1.5e-06 60.1 121 42.1
unitig_699.g19629 Utricularia gibba HOM05D003806 ORTHO05D004346 2.5e-06 59.3 89 37.1
BolC3t14493H Brassica oleracea HOM05D003806 ORTHO05D004346 4.3e-06 58.5 317 26.5
SEGI_03911 Sequoiadendron giganteum HOM05D003806 ORTHO05D002919 7.4e-06 57.8 263 27.8


User provided reference genes

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