Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 1.0e-154 550.1 279 100.0
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 3.3e-105 385.6 250 81.6
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 4.2e-100 368.6 253 77.1
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 1.2e-91 340.5 245 72.7
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 3.0e-90 335.9 245 71.4
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 6.7e-90 334.7 249 69.9
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 1.1e-89 334.0 245 69.8
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 6.3e-88 328.2 246 69.1
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 3.1e-87 325.9 242 70.2
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 3.1e-87 325.9 248 69.0
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 4.1e-87 325.5 240 70.4
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 4.1e-87 325.5 252 68.7
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 5.3e-87 325.1 251 69.3
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 5.3e-87 325.1 248 68.5
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 6.9e-87 324.7 248 67.7
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 2.0e-86 323.2 249 66.3
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 4.5e-86 322.0 248 69.0
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 5.9e-86 321.6 248 68.1
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 2.9e-85 319.3 246 67.9
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 5.0e-85 318.5 241 66.8
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 8.5e-85 317.8 249 66.7
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 5.5e-84 315.1 249 66.3
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 9.3e-84 314.3 252 67.5
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 1.2e-83 313.9 246 68.3
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 2.1e-83 313.2 244 67.2
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 3.9e-82 308.9 289 57.4
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 8.7e-82 307.8 252 65.5
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 1.5e-81 307.0 246 65.4
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 1.9e-81 306.6 213 72.3
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 1.9e-81 306.6 253 64.4
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 1.9e-81 306.6 256 64.1
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 2.5e-81 306.2 246 64.6
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 3.3e-81 305.8 247 64.8
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 4.3e-81 305.4 248 64.5
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 7.4e-81 304.7 246 64.6
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 1.3e-80 303.9 289 59.2
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 1.3e-80 303.9 226 69.5
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 2.2e-80 303.1 246 64.6
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 6.3e-80 301.6 245 63.7
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 6.3e-80 301.6 240 66.2
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 1.4e-79 300.4 232 67.7
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 1.4e-79 300.4 254 62.6
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 3.1e-79 299.3 245 65.3
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 3.1e-79 299.3 252 63.9
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 3.1e-79 299.3 248 63.7
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 4.1e-79 298.9 239 66.1
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 6.9e-79 298.1 249 63.1
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 1.5e-78 297.0 249 64.3
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 1.5e-78 297.0 247 64.4
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 2.0e-78 296.6 238 63.4
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 2.6e-78 296.2 260 61.5
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 4.5e-78 295.4 258 60.9
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 7.7e-78 294.7 235 65.1
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 1.0e-77 294.3 275 57.8
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 1.0e-77 294.3 257 61.5
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 1.7e-77 293.5 248 61.7
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 2.9e-77 292.7 283 56.9
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 3.8e-77 292.4 247 61.9
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 5.0e-77 292.0 265 58.1
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 5.0e-77 292.0 246 64.2
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 6.5e-77 291.6 237 65.0
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 8.5e-77 291.2 271 60.1
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 1.1e-76 290.8 232 63.8
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 1.1e-76 290.8 257 61.5
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 1.1e-76 290.8 239 62.8
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 1.9e-76 290.0 237 64.6
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 3.2e-76 289.3 221 66.5
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 3.2e-76 289.3 260 60.0
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 4.2e-76 288.9 263 59.3
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 1.2e-75 287.3 259 59.8
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.6e-75 287.0 251 62.9
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 3.9e-74 282.3 272 57.7
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 5.1e-74 282.0 258 59.7
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 5.1e-74 282.0 271 57.9
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 6.7e-74 281.6 251 62.5
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 6.7e-74 281.6 251 62.5
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 1.1e-73 280.8 247 61.5
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 1.1e-73 280.8 220 63.2
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 1.5e-73 280.4 247 61.5
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 2.6e-73 279.6 248 60.9
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 4.4e-73 278.9 258 58.1
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 7.4e-73 278.1 249 60.6
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 9.7e-73 277.7 257 59.9
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 1.3e-72 277.3 239 61.5
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 2.2e-72 276.6 254 59.8
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 2.2e-72 276.6 258 58.1
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 3.7e-72 275.8 224 64.3
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 6.3e-72 275.0 248 61.3
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 6.3e-72 275.0 272 56.2
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 6.3e-72 275.0 258 58.5
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 8.2e-72 274.6 256 58.6
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 8.2e-72 274.6 248 61.3
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 1.1e-71 274.2 252 60.3
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 1.1e-71 274.2 252 60.3
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 1.1e-71 274.2 249 59.8
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 1.4e-71 273.9 245 60.4
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 1.4e-71 273.9 258 58.9
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 1.4e-71 273.9 248 60.9
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 1.4e-71 273.9 269 57.6
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 1.8e-71 273.5 190 71.1
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 2.4e-71 273.1 256 58.2
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 2.2e-69 266.5 240 57.1
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 1.7e-64 250.4 195 66.2
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 3.7e-64 249.2 186 67.7
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 1.2e-62 244.2 138 87.0
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 6.5e-61 238.4 248 54.0
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 5.5e-60 235.3 200 60.5
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 6.1e-59 231.9 210 60.0
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 2.0e-57 226.9 246 52.8
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 3.2e-52 209.5 231 48.5
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 4.2e-52 209.1 266 52.6
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 5.5e-52 208.8 207 52.7
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 1.6e-51 207.2 239 46.4
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 5.2e-50 202.2 211 50.7
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 2.0e-46 190.3 137 71.5
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 1.3e-45 187.6 226 43.8
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 6.5e-45 185.3 121 71.9
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 2.6e-41 173.3 213 44.1
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 3.4e-41 172.9 242 43.0
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 1.3e-37 161.0 97 80.4
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 1.3e-37 161.0 99 78.8
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 8.3e-32 141.7 188 43.1
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 5.4e-31 139.0 208 37.0
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 5.0e-29 132.5 249 34.1
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 7.5e-25 118.6 72 79.2
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 3.1e-18 96.7 245 26.5
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 3.4e-17 93.2 123 45.5
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 6.4e-16 89.0 226 28.3
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 9.2e-15 85.1 126 42.1
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 6.8e-10 68.9 65 58.5
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 1.2e-09 68.2 96 39.6
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 1.5e-09 67.8 75 54.7
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 4.9e-08 62.8 126 32.5
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 1.4e-07 61.2 98 30.6
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 2.4e-07 60.5 155 28.4


User provided reference genes

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