Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0193300 Salix brachista HOM05D005066 ORTHO05D006138 7.9e-310 1066.2 526 100.0
Potri.005G249800 Populus trichocarpa HOM05D005066 ORTHO05D006138 7.7e-180 634.4 383 82.2
Potri.002G011200 Populus trichocarpa HOM05D005066 ORTHO05D006138 3.5e-164 582.4 405 72.1
Manes.18G005800 Manihot esculenta HOM05D005066 ORTHO05D006138 5.0e-163 578.6 383 74.2
Duzib093G2109 Durio zibethinus HOM05D005066 ORTHO05D006138 1.1e-162 577.4 383 72.6
Thecc.08G057800 Theobroma cacao HOM05D005066 ORTHO05D006138 3.2e-162 575.9 383 72.6
Cpa.g.sc26.207 Carica papaya HOM05D005066 ORTHO05D006138 3.0e-160 569.3 395 69.1
Gorai.009G267800 Gossypium raimondii HOM05D005066 ORTHO05D006138 4.9e-158 562.0 383 70.5
THA.LOC104813757 Tarenaya hassleriana HOM05D005066 ORTHO05D006138 4.9e-158 562.0 402 68.2
TWI36G1160 Tripterygium wilfordii HOM05D005066 ORTHO05D006138 6.3e-158 561.6 384 70.1
Gohir.A05G254700 Gossypium hirsutum HOM05D005066 ORTHO05D006138 1.4e-157 560.5 383 70.5
Eucgr.F03549 Eucalyptus grandis HOM05D005066 ORTHO05D006138 2.7e-156 556.2 383 69.5
Ciclev10001617m.g Citrus clementina HOM05D005066 ORTHO05D006138 4.5e-156 555.4 392 69.6
AL1G33470 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 2.3e-155 553.1 404 67.6
AT1G20540 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 3.8e-155 552.4 404 67.3
Dinv31933 Davidia involucrata HOM05D005066 ORTHO05D006138 5.0e-155 552.0 383 70.0
CiPaw.07G139500 Carya illinoinensis HOM05D005066 ORTHO05D006138 1.5e-154 550.4 395 66.8
Rhsim06G0007900 Rhododendron simsii HOM05D005066 ORTHO05D006138 2.5e-154 549.7 385 69.6
MD15G1002700 Malus domestica HOM05D005066 ORTHO05D006138 9.5e-154 547.7 382 69.1
Prupe.1G355000 Prunus persica HOM05D005066 ORTHO05D006138 9.5e-154 547.7 383 69.2
Hma1.2p1_0507F.1_g168410 Hydrangea macrophylla HOM05D005066 ORTHO05D006138 1.2e-153 547.4 404 65.3
Thhalv10008062m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 3.6e-153 545.8 404 66.3
GSVIVG01008680001 Vitis vinifera HOM05D005066 ORTHO05D006138 6.1e-153 545.0 383 70.0
Cfa014063 Carpinus fangiana HOM05D005066 ORTHO05D006138 8.0e-153 544.7 395 66.3
CSS0029951 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 1.0e-152 544.3 383 68.4
BcaB07g32052 Brassica carinata HOM05D005066 ORTHO05D006138 5.2e-152 542.0 403 66.0
Lj4C805G13 Lonicera japonica HOM05D005066 ORTHO05D006138 6.8e-152 541.6 383 69.5
MD08G1003000 Malus domestica HOM05D005066 ORTHO05D006138 6.8e-152 541.6 382 70.9
Oeu011330.2 Olea europaea HOM05D005066 ORTHO05D006138 1.5e-151 540.4 382 67.0
PGR031G0259 Punica granatum HOM05D005066 ORTHO05D006138 2.6e-151 539.7 382 67.0
A06p16540 Brassica napus HOM05D005066 ORTHO05D006138 2.2e-150 536.6 404 65.3
BraA06t24760Z Brassica rapa HOM05D005066 ORTHO05D006138 2.2e-150 536.6 404 65.3
Carub.0001s2001 Capsella rubella HOM05D005066 ORTHO05D006138 2.9e-150 536.2 404 64.9
Sp1g18250 Schrenkiella parvula HOM05D005066 ORTHO05D006138 2.9e-150 536.2 404 65.3
Actinidia37971 Actinidia chinensis HOM05D005066 ORTHO05D006138 4.9e-150 535.4 383 68.1
CsaV3_6G031630 Cucumis sativus L. HOM05D005066 ORTHO05D006138 7.0e-149 531.6 383 67.6
FAN20G0881 Fragaria x ananassa HOM05D005066 ORTHO05D006138 7.0e-149 531.6 383 67.6
COL.COLO4_03999 Corchorus olitorius HOM05D005066 ORTHO05D006138 9.2e-149 531.2 364 70.1
DCAR_013911 Daucus carota HOM05D005066 ORTHO05D006138 2.7e-148 529.6 382 66.2
FvH4_2g37550 Fragaria vesca HOM05D005066 ORTHO05D006138 3.5e-148 529.3 383 67.4
RcHm_v2.0_Chr6g0304181 Rosa chinensis HOM05D005066 ORTHO05D006138 3.5e-148 529.3 383 67.4
FAN15G0307 Fragaria x ananassa HOM05D005066 ORTHO05D006138 4.6e-148 528.9 383 67.4
Aa31LG7G4800 Aethionema arabicum HOM05D005066 ORTHO05D006138 5.9e-148 528.5 402 65.4
Migut.C00955 Erythranthe guttata HOM05D005066 ORTHO05D006138 1.0e-147 527.7 401 64.1
Lsat_1_v5_gn_2_6481 Lactuca sativa HOM05D005066 ORTHO05D006138 8.6e-147 524.6 402 66.2
CANSAT25G3513 Cannabis sativa HOM05D005066 ORTHO05D006138 1.9e-146 523.5 385 67.3
Thhalv10018792m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 2.5e-146 523.1 401 63.6
HanXRQChr14g0428271 Helianthus annuus HOM05D005066 ORTHO05D006138 2.5e-146 523.1 400 65.2
Sp5g31400 Schrenkiella parvula HOM05D005066 ORTHO05D006138 2.5e-146 523.1 382 65.4
Lalb_Chr23g0265821 Lupinus albus HOM05D005066 ORTHO05D006138 4.3e-146 522.3 393 64.4
MSTRG.27774 Avicennia marina HOM05D005066 ORTHO05D006138 7.3e-146 521.5 404 62.6
Cc10_g00720 Coffea canephora HOM05D005066 ORTHO05D006138 1.0e-144 517.7 383 66.1
ECA238G2025 Erigeron canadensis HOM05D005066 ORTHO05D006138 1.0e-144 517.7 383 67.6
AL2G36340 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 1.8e-144 516.9 401 63.1
Lj1g0027661 Lotus japonicus HOM05D005066 ORTHO05D006138 3.1e-144 516.2 394 64.0
VMungo1309G2329 Vigna mungo HOM05D005066 ORTHO05D006138 4.0e-144 515.8 382 64.9
Aa31LG4G6350 Aethionema arabicum HOM05D005066 ORTHO05D006138 5.2e-144 515.4 401 62.6
C06p50230 Brassica napus HOM05D005066 ORTHO05D006138 1.5e-143 513.8 401 64.8
BraA07t31713Z Brassica rapa HOM05D005066 ORTHO05D006138 1.5e-143 513.8 401 64.8
arahy.Tifrunner.gnm1.ann1.76XKSK Arachis hypogaea HOM05D005066 ORTHO05D006138 2.6e-143 513.1 382 63.6
arahy.Tifrunner.gnm1.ann1.B8YF15 Arachis hypogaea HOM05D005066 ORTHO05D006138 2.6e-143 513.1 382 63.6
BcaC08g47273 Brassica carinata HOM05D005066 ORTHO05D006138 5.8e-143 511.9 401 62.3
BolC6t40062H Brassica oleracea HOM05D005066 ORTHO05D006138 5.8e-143 511.9 401 62.3
FAN27G0843 Fragaria x ananassa HOM05D005066 ORTHO05D006138 5.8e-143 511.9 402 63.4
Carub.0002s2315 Capsella rubella HOM05D005066 ORTHO05D006138 7.5e-143 511.5 401 62.6
TPR.G38213 Trifolium pratense HOM05D005066 ORTHO05D006138 7.5e-143 511.5 394 63.2
SGA_v2.0_scaffold108G30855 Striga asiatica HOM05D005066 ORTHO05D006138 9.8e-143 511.1 381 64.6
Ca_15439_v3 Cicer arietinum L. HOM05D005066 ORTHO05D006138 1.7e-142 510.4 382 63.6
Sed0022458 Sechium edule HOM05D005066 ORTHO05D006138 1.7e-142 510.4 394 64.2
A07p41830 Brassica napus HOM05D005066 ORTHO05D006138 2.2e-142 510.0 401 64.6
Phvul.009G010100 Phaseolus vulgaris HOM05D005066 ORTHO05D006138 3.7e-142 509.2 392 63.0
CARHR069820 Cardamine hirsuta HOM05D005066 ORTHO05D006138 6.4e-142 508.4 401 65.1
AT1G76260 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 8.3e-142 508.1 401 64.6
Glyma.06G018800 Glycine max HOM05D005066 ORTHO05D006138 2.4e-141 506.5 394 62.7
vmacro21822 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 3.2e-141 506.1 364 67.0
Nitab4.5_0000588g0150 Nicotiana tabacum HOM05D005066 ORTHO05D006138 4.1e-141 505.8 386 63.7
Medtr3g115200 Medicago truncatula HOM05D005066 ORTHO05D006138 3.5e-140 502.7 394 62.2
CANSAT54G1628 Cannabis sativa HOM05D005066 ORTHO05D006138 2.3e-139 500.0 385 64.4
PGSC0003DMG400009976 Solanum tuberosum HOM05D005066 ORTHO05D006138 2.3e-139 500.0 382 64.9
Peaxi162Scf00893g00433 Petunia axillaris HOM05D005066 ORTHO05D006138 1.1e-138 497.7 382 63.1
Solyc04g082300.2 Solanum lycopersicum HOM05D005066 ORTHO05D006138 1.5e-138 497.3 382 64.7
Sopen04g035920 Solanum pennellii HOM05D005066 ORTHO05D006138 1.5e-138 497.3 382 64.7
MBI05_g05143_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 2.5e-138 496.5 383 62.7
Nn6g31745 Nelumbo nucifera HOM05D005066 ORTHO05D006138 2.1e-137 493.4 389 64.0
unitig_26.g9893 Utricularia gibba HOM05D005066 ORTHO05D006138 1.4e-136 490.7 382 64.1
PSO170G0128 Papaver somniferum HOM05D005066 ORTHO05D006138 3.1e-136 489.6 409 58.9
Hund05118 Selenicereus undatus HOM05D005066 ORTHO05D006138 6.8e-136 488.4 383 62.4
Aqoxy5G01046 Aquilegia oxysepala HOM05D005066 ORTHO05D006138 8.9e-136 488.0 378 61.9
Gohir.D05G256300 Gossypium hirsutum HOM05D005066 ORTHO05D006138 8.9e-136 488.0 333 69.7
SalBow7G4394 Salvia bowleyana HOM05D005066 ORTHO05D006138 3.4e-135 486.1 454 54.6
PSO210G7270 Papaver somniferum HOM05D005066 ORTHO05D006138 9.8e-135 484.6 402 59.7
Sc15g0004490 Simmondsia chinensis HOM05D005066 ORTHO05D006138 8.3e-134 481.5 364 66.5
AUR62043922 Chenopodium quinoa HOM05D005066 ORTHO05D006138 2.4e-133 479.9 383 65.3
AUR62036885 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.2e-132 477.6 392 63.5
Glyma.04G018500 Glycine max HOM05D005066 ORTHO05D006138 4.6e-132 475.7 363 63.6
C05p19110 Brassica napus HOM05D005066 ORTHO05D006138 3.9e-131 472.6 354 65.3
BolC5t30611H Brassica oleracea HOM05D005066 ORTHO05D006138 3.9e-131 472.6 354 65.3
BcaC05g25960 Brassica carinata HOM05D005066 ORTHO05D006138 8.6e-131 471.5 331 68.3
BcaC08g47124 Brassica carinata HOM05D005066 ORTHO05D006138 1.2e-129 467.6 363 65.6
ATR0661G259 Amborella trichopoda HOM05D005066 ORTHO05D006138 1.6e-124 450.7 383 55.4
EL10Ac1g01978 Beta vulgaris HOM05D005066 ORTHO05D006138 2.1e-121 440.3 340 65.3
TAR381G1664 Trochodendron aralioides HOM05D005066 ORTHO05D006138 6.2e-121 438.7 367 59.7
MELO3C026544.2 Cucumis melo HOM05D005066 ORTHO05D006138 9.9e-119 431.4 255 77.6
Psat5g011560 Pisum sativum HOM05D005066 ORTHO05D006138 1.3e-118 431.0 272 73.2
BNapus_Darmor_BZH_scaffold_170p00070 Brassica napus HOM05D005066 ORTHO05D006138 2.2e-118 430.3 341 62.5
Ah.13g072510 Amaranthus hybridus HOM05D005066 ORTHO05D006138 8.4e-118 428.3 452 49.8
Os08g0554000 Oryza sativa ssp. japonica HOM05D005066 ORTHO05D006138 6.0e-116 422.2 383 52.2
Zm00001eb039840 Zea mays HOM05D005066 ORTHO05D006138 2.4e-112 410.2 383 51.2
Haze_22764 Corylus avellana HOM05D005066 ORTHO05D006138 2.6e-111 406.8 223 83.4
Zm00001eb180420 Zea mays HOM05D005066 ORTHO05D006138 3.5e-108 396.4 383 49.3
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 6.9e-104 382.1 295 67.1
AUR62043921 Chenopodium quinoa HOM05D005066 ORTHO05D006138 2.3e-99 367.1 201 81.6
Atru.chr13.151 Acer truncatum HOM05D005066 ORTHO05D006138 1.5e-95 354.4 180 88.9
CSS0013002 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 5.5e-93 345.9 403 48.9
ClCG08G009490 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.1e-80 305.1 158 85.4
Mapoly0054s0060 Marchantia polymorpha HOM05D005066 ORTHO05D006138 9.4e-77 292.0 389 38.6
AagrBONN_evm.TU.Sc2ySwM_362.948 Anthoceros agrestis HOM05D005066 ORTHO05D006138 3.3e-74 283.5 384 38.3
SHI08001 Sapria himalayana HOM05D005066 ORTHO05D006138 1.6e-68 264.6 199 63.3
SMO118G0316 Selaginella moellendorffii HOM05D005066 ORTHO05D006138 1.1e-66 258.5 385 36.9
Actinidia29788 Actinidia chinensis HOM05D005066 ORTHO05D006138 2.0e-63 247.7 253 51.4
CARHR021010 Cardamine hirsuta HOM05D005066 ORTHO05D006138 2.0e-63 247.7 257 52.1
HPP92_008373 Vanilla planifolia HOM05D005066 ORTHO05D006138 1.1e-61 241.9 263 47.1
AUR62043554 Chenopodium quinoa HOM05D005066 ORTHO05D006138 6.7e-59 232.6 144 71.5
ClCG00G005440 Citrullus lanatus HOM05D005066 ORTHO05D006138 2.4e-56 224.2 118 83.9
CDE02G3878 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 1.5e-45 188.3 108 78.7
Cre02.g109400 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 3.0e-43 180.6 379 28.8
QL02p013958 Quercus lobata HOM05D005066 ORTHO05D006138 1.7e-41 174.9 87 92.0
MBI05_g41554_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 1.4e-27 128.6 216 37.0
ClCG08G009550 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.8e-27 128.3 158 46.2
CDE04G2988 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 9.8e-26 122.5 72 72.2
SEGI_37952 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 1.1e-24 119.0 81 59.3
vmacro11237 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 4.1e-24 117.1 69 73.9
vmacro11236 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 2.0e-23 114.8 70 71.4
Duzib116G0540 Durio zibethinus HOM05D005066 ORTHO05D006138 1.3e-22 112.1 271 31.0
Haze_22758 Corylus avellana HOM05D005066 ORTHO05D006138 6.6e-22 109.8 73 69.9
PRCOL_00000380 Prasinoderma coloniale HOM05D005066 ORTHO05D006138 1.4e-19 102.1 370 24.3
CBR_g17938 Chara braunii HOM05D005066 ORTHO05D006138 3.5e-15 87.4 229 31.4
Actinidia09068 Actinidia chinensis HOM05D005066 ORTHO05D006138 3.9e-14 84.0 54 74.1
Actinidia07458 Actinidia chinensis HOM05D005066 ORTHO05D006138 2.5e-13 81.3 44 77.3
arahy.Tifrunner.gnm1.ann1.7RQ6TB Arachis hypogaea HOM05D005066 ORTHO05D006138 3.6e-12 77.4 60 56.7
SEGI_07968 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 3.6e-12 77.4 50 66.0
arahy.Tifrunner.gnm1.ann1.FBZU85 Arachis hypogaea HOM05D005066 ORTHO05D006138 1.5e-10 72.0 42 71.4
AUR62018933 Chenopodium quinoa HOM05D000030 ORTHO05D000031 2.0e-10 71.6 87 43.7
AUR62038170 Chenopodium quinoa HOM05D000030 ORTHO05D000031 2.6e-10 71.2 42 69.0
Nn4g22810 Nelumbo nucifera HOM05D005066 ORTHO05D006138 9.2e-08 62.8 41 61.0
SGA_v2.0_scaffold275G46594 Striga asiatica HOM05D005066 ORTHO05D406259 1.2e-07 62.4 52 55.8
SEGI_12583 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 4.6e-07 60.5 68 41.2
vmacro21823 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 6.0e-07 60.1 44 63.6


User provided reference genes

Program Settings