Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0186300 Salix brachista HOM05D006975 ORTHO05D008736 1.0e-168 596.7 301 100.0
Potri.005G240800 Populus trichocarpa HOM05D006975 ORTHO05D008736 1.9e-146 522.7 301 87.4
Manes.05G146300 Manihot esculenta HOM05D006975 ORTHO05D008736 1.3e-99 367.1 305 63.0
CiPaw.08G066800 Carya illinoinensis HOM05D006975 ORTHO05D008736 1.9e-90 336.7 294 59.5
Dinv39526 Davidia involucrata HOM05D006975 ORTHO05D008736 1.2e-81 307.4 297 55.2
Haze_04763 Corylus avellana HOM05D006975 ORTHO05D008736 1.6e-81 307.0 295 55.9
GSVIVG01009926001 Vitis vinifera HOM05D006975 ORTHO05D008736 1.5e-79 300.4 296 55.1
TAR536G0001 Trochodendron aralioides HOM05D006975 ORTHO05D008736 5.7e-79 298.5 297 54.5
Cfa006087 Carpinus fangiana HOM05D006975 ORTHO05D008736 1.8e-77 293.5 301 53.8
CANSAT25G0709 Cannabis sativa HOM05D006975 ORTHO05D008736 3.1e-77 292.7 295 55.9
Cpa.g.sc26.57 Carica papaya HOM05D006975 ORTHO05D008736 1.7e-75 287.0 301 54.2
TWI12G0084 Tripterygium wilfordii HOM05D006975 ORTHO05D008736 2.9e-75 286.2 296 54.7
Duzib093G1023 Durio zibethinus HOM05D006975 ORTHO05D008736 3.8e-75 285.8 303 54.1
CSS0026180 Camellia sinensis var. sinensis HOM05D006975 ORTHO05D008736 1.9e-74 283.5 300 53.7
ClCG05G018220 Citrullus lanatus HOM05D006975 ORTHO05D008736 3.6e-73 279.3 295 50.5
COL.COLO4_26134 Corchorus olitorius HOM05D006975 ORTHO05D008736 4.7e-73 278.9 307 55.4
CSS0040454 Camellia sinensis var. sinensis HOM05D006975 ORTHO05D008736 8.0e-73 278.1 300 53.0
Gorai.002G123100 Gossypium raimondii HOM05D006975 ORTHO05D008736 3.0e-72 276.2 304 52.6
Gohir.D01G097400 Gossypium hirsutum HOM05D006975 ORTHO05D008736 6.8e-72 275.0 304 52.6
MD08G1012000 Malus domestica HOM05D006975 ORTHO05D008736 6.8e-72 275.0 291 54.6
Atru.chr13.277_Atru.chr13.278 Acer truncatum HOM05D006975 ORTHO05D008736 1.5e-71 273.9 311 51.1
Gohir.A01G110800 Gossypium hirsutum HOM05D006975 ORTHO05D008736 1.5e-71 273.9 304 52.3
Nn1g05932 Nelumbo nucifera HOM05D006975 ORTHO05D008736 1.7e-70 270.4 270 53.7
QL02p011816 Quercus lobata HOM05D006975 ORTHO05D008736 3.7e-70 269.2 355 45.4
Prupe.1G364300 Prunus persica HOM05D006975 ORTHO05D008736 4.1e-69 265.8 297 54.9
Sopen04g035150 Solanum pennellii HOM05D006975 ORTHO05D008736 9.2e-69 264.6 292 49.0
Solyc04g081540.3 Solanum lycopersicum HOM05D006975 ORTHO05D008736 4.5e-68 262.3 292 49.0
Actinidia15428 Actinidia chinensis HOM05D006975 ORTHO05D008736 1.7e-67 260.4 218 61.0
Lj4A797T59 Lonicera japonica HOM05D006975 ORTHO05D008736 5.0e-67 258.8 284 53.2
PGSC0003DMG401009870 Solanum tuberosum HOM05D006975 ORTHO05D008736 8.6e-67 258.1 290 47.9
MBI05_g19267_MAGBIO Magnolia biondii HOM05D006975 ORTHO05D008736 1.5e-66 257.3 274 54.7
MSTRG.1185 Avicennia marina HOM05D006975 ORTHO05D008736 7.3e-66 255.0 294 50.7
Sed0023128 Sechium edule HOM05D006975 ORTHO05D008736 2.8e-65 253.1 272 52.2
Phvul.007G020200 Phaseolus vulgaris HOM05D006975 ORTHO05D008736 3.6e-65 252.7 301 51.2
Lj5g0003318 Lotus japonicus HOM05D006975 ORTHO05D008736 4.7e-65 252.3 306 49.7
RcHm_v2.0_Chr6g0303031 Rosa chinensis HOM05D006975 ORTHO05D008736 6.1e-65 251.9 291 50.2
Thecc.08G046000 Theobroma cacao HOM05D006975 ORTHO05D008736 1.0e-64 251.1 257 56.8
BolC1t01871H Brassica oleracea HOM05D006975 ORTHO05D008736 1.4e-64 250.8 312 48.4
THA.LOC104798667 Tarenaya hassleriana HOM05D006975 ORTHO05D008736 1.4e-64 250.8 226 60.6
C01p19420 Brassica napus HOM05D006975 ORTHO05D008736 1.8e-64 250.4 312 48.4
FvH4_2g38330 Fragaria vesca HOM05D006975 ORTHO05D008736 1.8e-64 250.4 289 50.5
HanXRQChr05g0145201 Helianthus annuus HOM05D006975 ORTHO05D008736 1.8e-64 250.4 305 47.2
CsaV3_3G045930 Cucumis sativus L. HOM05D006975 ORTHO05D008736 8.9e-64 248.1 297 47.1
AL7G29110 Arabidopsis lyrata HOM05D006975 ORTHO05D008736 1.2e-63 247.7 307 48.5
Cc10_g01570 Coffea canephora HOM05D006975 ORTHO05D008736 1.2e-63 247.7 301 47.8
Lalb_Chr02g0143331 Lupinus albus HOM05D006975 ORTHO05D008736 1.2e-63 247.7 317 48.3
BcaC09g50900 Brassica carinata HOM05D006975 ORTHO05D008736 2.0e-63 246.9 244 54.9
ECA232G2413 Erigeron canadensis HOM05D006975 ORTHO05D008736 2.0e-63 246.9 281 49.8
BraA01t01489Z Brassica rapa HOM05D006975 ORTHO05D008736 2.6e-63 246.5 237 56.1
VMungo0720G0770 Vigna mungo HOM05D006975 ORTHO05D008736 9.8e-63 244.6 304 47.7
FAN20G0256 Fragaria x ananassa HOM05D006975 ORTHO05D008736 1.7e-62 243.8 296 49.7
PGR031G2234 Punica granatum HOM05D006975 ORTHO05D008736 2.2e-62 243.4 307 48.9
Oeu027521.1 Olea europaea HOM05D006975 ORTHO05D008736 4.9e-62 242.3 299 48.2
Sed0014296 Sechium edule HOM05D006975 ORTHO05D008736 4.1e-61 239.2 298 48.0
CARHR231580 Cardamine hirsuta HOM05D006975 ORTHO05D008736 7.0e-61 238.4 310 47.4
MELO3C003746.2 Cucumis melo HOM05D006975 ORTHO05D008736 9.2e-61 238.0 309 45.3
PSO675G8288 Papaver somniferum HOM05D006975 ORTHO05D008736 9.2e-61 238.0 254 51.6
arahy.Tifrunner.gnm1.ann1.Z9XT7U Arachis hypogaea HOM05D006975 ORTHO05D008736 6.0e-60 235.3 247 53.4
Hma1.2p1_0023F.1_g015550 Hydrangea macrophylla HOM05D006975 ORTHO05D008736 7.8e-60 235.0 244 53.7
Medtr1g112320 Medicago truncatula HOM05D006975 ORTHO05D008736 1.7e-59 233.8 301 47.8
Nitab4.5_0008000g0010 Nicotiana tabacum HOM05D006975 ORTHO05D008736 3.0e-59 233.0 299 44.8
Glyma.20G108900 Glycine max HOM05D006975 ORTHO05D008736 3.9e-59 232.6 299 48.5
FAN15G2275 Fragaria x ananassa HOM05D006975 ORTHO05D008736 5.0e-59 232.3 296 47.3
A01p15500 Brassica napus HOM05D006975 ORTHO05D008736 6.6e-59 231.9 264 50.4
BcaNung01123 Brassica carinata HOM05D006975 ORTHO05D008736 8.6e-59 231.5 219 57.1
Thhalv10025797m.g Eutrema salsugineum HOM05D006975 ORTHO05D008736 1.9e-58 230.3 213 56.8
Ciclev10001912m.g Citrus clementina HOM05D006975 ORTHO05D008736 2.5e-58 229.9 308 46.8
TPR.G2436 Trifolium pratense HOM05D006975 ORTHO05D008736 4.3e-58 229.2 210 56.2
AT4G24175 Arabidopsis thaliana HOM05D006975 ORTHO05D008736 2.8e-57 226.5 307 45.6
PSO541G1271 Papaver somniferum HOM05D006975 ORTHO05D008736 8.0e-57 224.9 310 44.8
Rhsim06G0020700 Rhododendron simsii HOM05D006975 ORTHO05D008736 1.4e-56 224.2 386 39.4
DCAR_021031 Daucus carota HOM05D006975 ORTHO05D008736 1.8e-56 223.8 268 49.3
Ca_11200_v3 Cicer arietinum L. HOM05D006975 ORTHO05D008736 3.1e-56 223.0 299 47.2
Aqoxy6G02228 Aquilegia oxysepala HOM05D006975 ORTHO05D008736 5.2e-56 222.2 259 51.4
Hund05184 Selenicereus undatus HOM05D006975 ORTHO05D008736 8.9e-56 221.5 260 47.3
Sp7g22140 Schrenkiella parvula HOM05D006975 ORTHO05D008736 1.2e-55 221.1 321 45.5
CAN.G311.39 Capsicum annuum HOM05D006975 ORTHO05D008736 7.5e-55 218.4 328 41.5
CDE04G0963 Ceratophyllum demersum HOM05D006975 ORTHO05D008736 7.5e-55 218.4 249 49.0
Migut.C00848 Erythranthe guttata HOM05D006975 ORTHO05D008736 7.5e-55 218.4 303 46.2
Psat6g231560 Pisum sativum HOM05D006975 ORTHO05D008736 7.5e-55 218.4 293 47.4
Aa31sc424G20 Aethionema arabicum HOM05D006975 ORTHO05D008736 2.2e-54 216.9 307 45.0
Lsat_1_v5_gn_0_34641 Lactuca sativa HOM05D006975 ORTHO05D008736 2.2e-54 216.9 250 48.8
EL10Ac1g02185 Beta vulgaris HOM05D006975 ORTHO05D008736 2.9e-54 216.5 307 44.3
Os04g0250700 Oryza sativa ssp. japonica HOM05D006975 ORTHO05D008736 8.3e-54 214.9 259 49.4
HPP92_004984 Vanilla planifolia HOM05D006975 ORTHO05D008736 4.1e-53 212.6 244 50.0
Atru.chr13.275 Acer truncatum HOM05D006975 ORTHO05D008736 6.0e-52 208.8 253 50.6
SGA_v2.0_scaffold11G05927 Striga asiatica HOM05D006975 ORTHO05D008736 7.8e-52 208.4 320 43.4
Carub.0007s1692 Capsella rubella HOM05D006975 ORTHO05D008736 3.9e-51 206.1 207 51.7
Zm00001eb086730 Zea mays HOM05D006975 ORTHO05D008736 1.5e-50 204.1 272 46.0
Eucgr.H00993 Eucalyptus grandis HOM05D006975 ORTHO05D008736 1.1e-48 198.0 192 54.7
MD08G1011800 Malus domestica HOM05D006975 ORTHO05D008736 8.9e-48 194.9 198 55.6
unitig_748.g7725 Utricularia gibba HOM05D006975 ORTHO05D008736 1.2e-47 194.5 203 51.2
AUR62035015 Chenopodium quinoa HOM05D006975 ORTHO05D008736 2.0e-47 193.7 216 50.9
Peaxi162Scf00553g00101 Petunia axillaris HOM05D006975 ORTHO05D008736 2.0e-47 193.7 193 52.8
FAN27G0483 Fragaria x ananassa HOM05D006975 ORTHO05D008736 1.1e-45 188.0 209 50.2
arahy.Tifrunner.gnm1.ann1.Y91ZV9 Arachis hypogaea HOM05D006975 ORTHO05D008736 5.1e-43 179.1 314 38.9
vmacro07578 Vaccinium macrocarpon HOM05D006975 ORTHO05D008736 3.3e-42 176.4 374 35.8
Hma1.2p1_0023F.1_g015540 Hydrangea macrophylla HOM05D006975 ORTHO05D008736 6.8e-40 168.7 287 39.0
AUR62041899 Chenopodium quinoa HOM05D006975 ORTHO05D008736 1.4e-37 161.0 182 51.1
THA.LOC104798678 Tarenaya hassleriana HOM05D006975 ORTHO05D008736 1.7e-30 137.5 230 42.2
Pp3c5_3830 Physcomitrium patens HOM05D006975 ORTHO05D008736 3.2e-29 133.3 210 40.0
ATR0564G524 Amborella trichopoda HOM05D006975 ORTHO05D008736 1.7e-27 127.5 275 33.5
TAR381G1583 Trochodendron aralioides HOM05D006975 ORTHO05D008736 4.3e-26 122.9 150 46.7
Mapoly0138s0045 Marchantia polymorpha HOM05D006975 ORTHO05D008736 8.1e-25 118.6 198 36.4
TAR628G0560 Trochodendron aralioides HOM05D006975 ORTHO05D008736 2.4e-21 107.1 135 46.7
Cfa006091 Carpinus fangiana HOM05D006789 ORTHO05D008460 1.9e-18 97.4 123 48.8
Eucgr.H00979 Eucalyptus grandis HOM05D006975 ORTHO05D008736 2.8e-17 93.6 122 45.1
SEGI_37599 Sequoiadendron giganteum HOM05D006975 ORTHO05D008736 1.4e-16 91.3 62 67.7
CDE02G4250 Ceratophyllum demersum HOM05D000565 ORTHO05D004389 2.6e-15 87.0 101 47.5
Eucgr.F00573 Eucalyptus grandis HOM05D006975 ORTHO05D008736 4.5e-15 86.3 154 39.0
arahy.Tifrunner.gnm1.ann1.1D0YR0 Arachis hypogaea HOM05D006975 ORTHO05D008736 1.3e-14 84.7 91 49.5
Pp3c8_21620 Physcomitrium patens HOM05D003148 ORTHO05D003894 7.1e-13 79.0 110 37.3
SEGI_16371 Sequoiadendron giganteum HOM05D006975 ORTHO05D008736 1.2e-12 78.2 103 38.8
Eucgr.F00575 Eucalyptus grandis HOM05D006975 ORTHO05D008736 2.1e-12 77.4 77 58.4
Sabra02G0016800 Salix brachista HOM05D006975 ORTHO05D008736 1.0e-11 75.1 93 51.6
CBR_g44391 Chara braunii HOM05D006975 ORTHO05D008736 1.5e-10 71.2 94 39.4
Pp3c24_16390 Physcomitrium patens HOM05D003148 ORTHO05D003894 1.4e-08 64.7 89 34.8
Eucgr.H00983 Eucalyptus grandis HOM05D006975 ORTHO05D008736 5.3e-08 62.8 62 51.6
Eucgr.H00986 Eucalyptus grandis HOM05D006975 ORTHO05D008736 2.0e-07 60.8 42 69.0


User provided reference genes

Program Settings