Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 4.6e-206 721.1 384 100.0
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 3.4e-153 545.4 382 80.1
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 3.3e-148 528.9 385 77.7
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 2.9e-144 515.8 380 75.0
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 1.2e-105 387.5 381 60.1
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 3.3e-103 379.4 372 61.0
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 3.5e-89 332.8 374 55.1
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 4.6e-89 332.4 374 54.8
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 7.8e-89 331.6 374 55.1
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 3.9e-88 329.3 373 54.2
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 2.5e-87 326.6 371 56.9
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 1.6e-86 323.9 374 53.7
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 1.4e-85 320.9 403 51.1
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 4.9e-83 312.4 378 54.8
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 9.2e-82 308.1 423 50.4
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 2.7e-81 306.6 410 51.2
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 4.6e-81 305.8 379 53.3
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 7.8e-81 305.1 387 53.2
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 1.3e-80 304.3 364 56.6
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 1.1e-79 301.2 389 51.4
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 2.1e-78 297.0 365 53.7
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 3.4e-76 289.7 375 49.1
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 3.8e-75 286.2 370 54.9
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 6.4e-75 285.4 400 48.0
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 1.4e-74 284.3 376 50.8
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 1.4e-74 284.3 377 49.1
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 2.4e-74 283.5 380 50.5
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 4.1e-74 282.7 389 49.6
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 2.7e-73 280.0 370 48.1
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 4.6e-73 279.3 389 50.9
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 3.9e-72 276.2 403 46.4
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 8.6e-72 275.0 395 47.1
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 5.6e-71 272.3 391 47.3
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 5.6e-71 272.3 384 47.9
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 1.2e-70 271.2 382 48.4
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 1.6e-70 270.8 398 48.5
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 3.6e-70 269.6 388 47.7
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 3.6e-70 269.6 365 48.8
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 3.6e-70 269.6 367 48.0
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 1.1e-69 268.1 397 49.6
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 1.4e-69 267.7 407 47.7
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.4e-69 267.7 373 46.9
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.8e-69 267.3 373 46.4
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 4.4e-68 262.7 376 43.6
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 2.9e-67 260.0 376 45.7
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 1.1e-66 258.1 387 48.6
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 1.4e-66 257.7 400 46.2
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 2.4e-66 256.9 391 45.8
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 4.2e-66 256.1 389 44.0
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 1.6e-65 254.2 386 46.4
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 1.3e-64 251.1 344 51.2
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 2.3e-64 250.4 380 47.4
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 3.9e-64 249.6 334 48.8
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 3.9e-64 249.6 380 46.6
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 5.1e-64 249.2 384 43.0
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 6.6e-64 248.8 391 44.8
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 1.1e-63 248.1 404 45.8
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 2.5e-63 246.9 344 51.2
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 4.3e-63 246.1 391 47.8
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 1.6e-62 244.2 377 46.4
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 2.1e-62 243.8 392 46.7
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 1.2e-60 238.0 384 41.7
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 1.5e-60 237.7 381 43.6
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 5.8e-60 235.7 380 45.8
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 7.6e-60 235.3 409 43.3
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 1.3e-59 234.6 388 43.0
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 6.4e-59 232.3 394 43.4
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 7.1e-58 228.8 391 42.7
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 9.3e-58 228.4 372 43.3
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 9.3e-58 228.4 369 42.8
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 1.6e-57 227.6 370 42.2
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 1.6e-57 227.6 367 42.2
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 3.5e-57 226.5 371 43.1
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 1.3e-56 224.6 425 41.9
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 3.0e-56 223.4 373 46.4
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 3.9e-56 223.0 377 43.5
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 5.1e-56 222.6 365 43.0
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 4.3e-55 219.5 324 45.7
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 5.6e-55 219.2 407 43.0
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 9.6e-55 218.4 400 40.8
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 1.6e-54 217.6 372 41.4
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 2.8e-54 216.9 399 41.9
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 1.1e-53 214.9 390 43.1
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 1.8e-53 214.2 326 46.3
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 1.8e-53 214.2 397 41.3
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 3.1e-53 213.4 398 42.5
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 5.3e-53 212.6 398 43.0
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 1.5e-52 211.1 412 41.7
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 2.0e-52 210.7 384 42.2
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 2.6e-52 210.3 341 42.5
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 9.9e-52 208.4 382 42.1
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 1.7e-51 207.6 419 41.1
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 1.4e-50 204.5 411 38.9
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 5.5e-50 202.6 348 42.0
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 5.5e-50 202.6 418 40.2
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 9.3e-50 201.8 368 39.1
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 3.0e-48 196.8 396 41.9
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 3.9e-48 196.4 423 40.4
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 1.9e-47 194.1 390 39.5
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 3.3e-47 193.4 392 40.6
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 5.6e-47 192.6 390 42.6
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 5.6e-47 192.6 390 42.6
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 7.4e-47 192.2 380 41.1
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 7.4e-47 192.2 380 41.1
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 7.4e-47 192.2 380 41.1
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 9.6e-47 191.8 378 41.8
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 6.2e-46 189.1 413 37.0
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 1.1e-45 188.3 377 41.9
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 1.4e-45 188.0 380 40.5
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 1.4e-45 188.0 380 40.5
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 1.4e-45 188.0 380 40.5
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 9.0e-45 185.3 387 41.1
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 9.0e-45 185.3 387 41.1
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 2.0e-44 184.1 374 40.6
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 2.6e-44 183.7 396 38.9
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 2.6e-44 183.7 363 39.4
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 5.8e-44 182.6 398 38.2
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 2.2e-43 180.6 372 39.5
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 2.9e-43 180.3 249 50.2
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 3.8e-43 179.9 381 40.2
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 8.4e-43 178.7 177 58.8
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.1e-42 178.3 204 57.4
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 2.5e-42 177.2 376 37.2
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 3.9e-40 169.9 354 41.2
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 1.5e-39 167.9 387 38.5
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 7.4e-39 165.6 404 37.6
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 7.4e-39 165.6 374 39.6
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.1e-37 161.8 251 49.0
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 2.4e-37 160.6 155 59.4
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 4.5e-36 156.4 366 35.8
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 1.1e-34 151.8 378 34.9
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 9.3e-34 148.7 384 35.7
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 5.3e-29 132.9 410 31.7
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 4.5e-28 129.8 377 33.2
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 4.2e-26 123.2 343 35.9
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 7.2e-26 122.5 256 39.1
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 8.8e-24 115.5 220 42.7
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 7.4e-15 85.9 214 36.4
Cpa.g.c44470 Carica papaya HOM05D005109 ORTHO05D006084 1.4e-13 81.6 154 42.9
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 1.8e-13 81.3 175 38.3
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 3.8e-11 73.6 314 26.8
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 3.2e-10 70.5 317 28.1
Migut.M01016 Erythranthe guttata HOM05D008010 ORTHO05D010085 2.2e-06 57.8 262 25.2


User provided reference genes

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