Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 6.9e-122 440.7 223 100.0
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 1.0e-64 250.8 223 64.6
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 5.6e-63 245.0 223 62.8
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 1.1e-58 230.7 223 58.3
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.6e-57 226.9 223 58.3
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 2.0e-57 226.5 223 57.8
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 3.5e-57 225.7 223 57.4
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 3.5e-57 225.7 223 57.4
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 7.8e-57 224.6 223 57.4
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 1.0e-56 224.2 223 57.8
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 1.3e-56 223.8 211 60.7
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 1.1e-55 220.7 223 56.5
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 1.1e-55 220.7 223 57.0
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 1.9e-55 219.9 223 56.1
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 1.9e-55 219.9 223 56.5
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 3.3e-55 219.2 223 57.4
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 3.3e-55 219.2 224 57.6
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 9.5e-55 217.6 221 56.1
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 6.2e-54 214.9 213 57.7
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 1.8e-53 213.4 221 55.2
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 2.3e-53 213.0 223 55.6
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 2.3e-53 213.0 222 54.5
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 8.9e-53 211.1 221 55.2
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 4.4e-52 208.8 216 55.1
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 9.8e-52 207.6 209 56.9
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 1.7e-51 206.8 224 54.5
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 2.2e-51 206.5 215 54.9
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 2.2e-51 206.5 223 54.3
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 2.9e-51 206.1 223 54.3
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 2.9e-51 206.1 223 53.8
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 3.7e-51 205.7 223 54.7
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 8.3e-51 204.5 223 53.8
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 8.3e-51 204.5 221 54.8
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 3.2e-50 202.6 212 54.7
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 2.7e-49 199.5 224 54.0
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.7e-49 199.5 224 54.0
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.7e-49 199.5 224 53.6
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.7e-49 199.5 224 53.6
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 4.6e-49 198.7 221 55.2
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 6.0e-49 198.4 222 54.1
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 1.0e-48 197.6 232 50.0
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 2.5e-47 193.0 217 51.6
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 3.3e-47 192.6 222 53.6
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 7.3e-47 191.4 222 51.8
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 1.6e-46 190.3 218 52.8
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 2.8e-46 189.5 209 53.1
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 8.1e-46 188.0 220 51.8
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 1.1e-45 187.6 222 51.4
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 1.1e-45 187.6 222 50.9
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 1.1e-45 187.6 220 52.3
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 2.3e-45 186.4 220 50.9
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 8.9e-45 184.5 222 50.5
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 1.2e-44 184.1 222 49.5
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 2.6e-44 183.0 220 50.9
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 2.6e-44 183.0 218 50.5
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 3.4e-44 182.6 224 50.0
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 3.4e-44 182.6 224 51.3
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 3.4e-44 182.6 220 50.0
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 4.4e-44 182.2 220 51.8
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 7.6e-44 181.4 217 50.7
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 7.6e-44 181.4 220 50.0
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 2.2e-43 179.9 220 49.1
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 2.9e-43 179.5 220 49.1
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 2.9e-43 179.5 220 49.1
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 2.9e-43 179.5 220 49.1
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 3.8e-43 179.1 225 49.8
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 6.4e-43 178.3 222 50.9
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 8.4e-43 177.9 220 48.6
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.1e-41 173.3 220 47.7
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.1e-41 173.3 220 47.7
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 3.5e-41 172.6 270 42.6
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 1.0e-40 171.0 194 53.1
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 1.3e-40 170.6 217 48.8
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 1.7e-40 170.2 223 48.0
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.7e-40 170.2 220 47.3
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 1.7e-40 170.2 218 48.6
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 5.1e-40 168.7 220 47.7
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 6.6e-40 168.3 212 50.9
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 6.6e-40 168.3 217 48.4
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 8.6e-40 167.9 224 48.2
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 1.5e-39 167.2 222 48.2
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 3.3e-39 166.0 93 89.2
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 3.3e-39 166.0 224 47.8
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 7.3e-39 164.9 222 46.4
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 1.6e-38 163.7 220 48.6
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 2.1e-38 163.3 221 46.6
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 2.8e-38 162.9 219 46.6
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 3.6e-38 162.5 217 47.0
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 3.6e-38 162.5 218 46.8
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 8.1e-38 161.4 94 87.2
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 1.4e-37 160.6 222 45.5
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 1.4e-37 160.6 222 43.2
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 2.4e-37 159.8 220 48.2
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 2.4e-37 159.8 220 47.7
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 3.1e-37 159.5 217 48.8
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 3.1e-37 159.5 224 48.2
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 3.1e-37 159.5 93 82.8
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 8.9e-37 157.9 221 45.2
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 8.9e-37 157.9 220 46.8
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 1.5e-36 157.1 220 45.5
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 3.4e-36 156.0 220 45.0
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 4.4e-36 155.6 116 67.2
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 9.9e-36 154.5 217 45.6
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 1.7e-35 153.7 217 45.2
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 1.7e-35 153.7 217 47.0
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.2e-35 153.3 232 46.6
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 2.2e-35 153.3 217 46.5
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 4.9e-35 152.1 217 43.8
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 6.4e-35 151.8 217 44.7
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 8.4e-35 151.4 217 46.5
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 1.1e-34 151.0 220 44.5
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 1.1e-34 151.0 210 45.7
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 1.1e-34 151.0 210 45.7
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 1.1e-34 151.0 217 43.8
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 1.4e-34 150.6 220 46.4
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.9e-34 150.2 217 46.1
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 1.9e-34 150.2 224 44.6
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 4.2e-34 149.1 195 50.3
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 5.4e-34 148.7 91 82.4
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 7.1e-34 148.3 243 42.4
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 7.1e-34 148.3 223 43.0
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 9.3e-34 147.9 217 44.7
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 2.1e-33 146.7 188 48.9
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 2.3e-32 143.3 89 80.9
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 4.3e-31 139.0 93 75.3
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 4.3e-31 139.0 217 41.0
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 4.3e-31 139.0 205 44.4
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 7.3e-31 138.3 195 47.2
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 8.1e-30 134.8 90 73.3
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 1.4e-29 134.0 217 41.0
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 1.4e-29 134.0 189 45.0
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 1.8e-29 133.7 213 41.8
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 1.8e-29 133.7 213 41.8
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 1.8e-29 133.7 184 46.7
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 1.8e-29 133.7 213 41.8
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 1.8e-29 133.7 218 39.0
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 4.0e-29 132.5 218 39.0
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 5.3e-29 132.1 218 39.0
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 9.0e-29 131.3 95 70.5
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 9.0e-29 131.3 94 69.1
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 1.5e-28 130.6 88 76.1
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 2.0e-28 130.2 206 42.2
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 2.0e-28 130.2 204 42.6
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 2.6e-28 129.8 95 70.5
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 3.4e-28 129.4 178 46.1
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 5.8e-28 128.6 94 71.3
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 2.2e-27 126.7 222 39.2
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 3.8e-27 125.9 73 83.6
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 6.4e-27 125.2 213 39.9
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 1.9e-26 123.6 215 39.5
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 1.9e-26 123.6 218 36.2
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 3.2e-26 122.9 92 68.5
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 1.0e-24 117.9 223 36.3
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 1.8e-24 117.1 87 65.5
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 1.9e-23 113.6 187 41.2
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 2.5e-23 113.2 216 38.0
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 5.6e-23 112.1 83 68.7
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 8.1e-22 108.2 190 38.4
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 1.1e-21 107.8 82 67.1
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 1.2e-20 104.4 217 38.7
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 1.7e-19 100.5 220 34.5
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 1.4e-18 97.4 89 65.2
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 3.2e-18 96.3 75 61.3
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 5.5e-18 95.5 84 54.8
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 2.1e-17 93.6 89 60.7
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 3.0e-16 89.7 208 36.5
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 4.3e-15 85.9 60 68.3
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 9.0e-13 78.2 41 87.8
arahy.Tifrunner.gnm1.ann1.A8QM82 Arachis hypogaea HOM05D004104 ORTHO05D004755 2.0e-12 77.0 46 76.1
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.6e-12 76.6 62 59.7
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.0e-11 74.7 62 59.7
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 1.9e-10 70.5 150 36.0
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 9.3e-10 68.2 152 37.5
Cc01_g11500 Coffea canephora HOM05D004104 ORTHO05D004755 3.5e-09 66.2 62 58.1
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 6.0e-09 65.5 66 48.5
Cre06.g291200 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 1.3e-08 64.3 73 49.3
SHI09794 Sapria himalayana HOM05D004104 ORTHO05D004755 2.3e-08 63.5 41 73.2
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 1.1e-07 61.2 76 46.1
Aqoxy2G03647 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 4.3e-07 59.3 63 54.0
DCAR_012546 Daucus carota HOM05D004104 ORTHO05D004755 6.3e-06 55.5 87 43.7


User provided reference genes

Program Settings