Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0098800 Salix brachista HOM05D004674 ORTHO05D349121 1.5e-59 232.6 116 100.0
Potri.005G120100 Populus trichocarpa HOM05D004674 ORTHO05D007261 1.2e-16 90.1 54 85.2
Manes.02G097100 Manihot esculenta HOM05D004674 ORTHO05D007261 1.1e-09 67.0 54 68.5
BolC7t43070H Brassica oleracea HOM05D004674 ORTHO05D007261 1.4e-09 66.6 54 64.8
Ciclev10024970m.g Citrus clementina HOM05D004674 ORTHO05D007261 1.4e-09 66.6 54 68.5
GSVIVG01018892001 Vitis vinifera HOM05D004674 ORTHO05D007261 1.8e-09 66.2 54 68.5
TAR376G0038 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.4e-09 65.9 52 69.2
TAR376G0875 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.4e-09 65.9 52 69.2
Duzib147G1548 Durio zibethinus HOM05D004674 ORTHO05D007261 3.1e-09 65.5 54 68.5
Gohir.A11G182500 Gossypium hirsutum HOM05D004674 ORTHO05D007261 3.1e-09 65.5 54 68.5
Atru.chr3.652 Acer truncatum HOM05D004674 ORTHO05D007261 5.4e-09 64.7 54 66.7
Atru.chr3.699 Acer truncatum HOM05D004674 ORTHO05D007261 5.4e-09 64.7 54 66.7
Prupe.7G158600 Prunus persica HOM05D004674 ORTHO05D007261 5.4e-09 64.7 54 66.7
CSS0017426 Camellia sinensis var. sinensis HOM05D004674 ORTHO05D007261 7.0e-09 64.3 52 69.2
Gohir.A11G182300 Gossypium hirsutum HOM05D004674 ORTHO05D007261 7.0e-09 64.3 54 70.4
Gohir.D11G189100 Gossypium hirsutum HOM05D004674 ORTHO05D007261 7.0e-09 64.3 54 70.4
Gorai.007G201200 Gossypium raimondii HOM05D004674 ORTHO05D007261 7.0e-09 64.3 54 70.4
Oeu019445.1 Olea europaea HOM05D004674 ORTHO05D007261 7.0e-09 64.3 52 67.3
Thecc.01G030000 Theobroma cacao HOM05D004674 ORTHO05D007261 7.0e-09 64.3 54 68.5
Zm00001eb225760 Zea mays HOM05D004674 ORTHO05D007261 7.0e-09 64.3 54 66.7
Actinidia35628 Actinidia chinensis HOM05D004674 ORTHO05D007261 1.2e-08 63.5 53 66.0
BcaC06g34697 Brassica carinata HOM05D004674 ORTHO05D007261 1.2e-08 63.5 54 61.1
C07p25500 Brassica napus HOM05D004674 ORTHO05D007261 1.2e-08 63.5 54 61.1
Medtr8g076950 Medicago truncatula HOM05D004674 ORTHO05D007261 1.2e-08 63.5 54 66.7
Rhsim08G0121400 Rhododendron simsii HOM05D004674 ORTHO05D007261 1.2e-08 63.5 52 71.2
Cpa.g.sc6.166 Carica papaya HOM05D004674 ORTHO05D007261 1.6e-08 63.2 53 64.2
Hund16446 Selenicereus undatus HOM05D004674 ORTHO05D007261 1.6e-08 63.2 52 67.3
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 2.7e-08 62.4 54 64.8
Lj4A206G17 Lonicera japonica HOM05D004674 ORTHO05D007261 2.7e-08 62.4 52 65.4
PGR119G1113 Punica granatum HOM05D004674 ORTHO05D007261 2.7e-08 62.4 54 64.8
CANSAT01G1299 Cannabis sativa HOM05D004674 ORTHO05D007261 3.5e-08 62.0 54 66.7
Dinv40019 Davidia involucrata HOM05D004674 ORTHO05D007261 3.5e-08 62.0 54 64.8
TWI09G0339 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 3.5e-08 62.0 52 69.2
Potri.007G021000 Populus trichocarpa HOM05D004674 ORTHO05D007261 4.5e-08 61.6 54 64.8
SalBow8G1271 Salvia bowleyana HOM05D004674 ORTHO05D007261 4.5e-08 61.6 54 64.8
TAR376G0961 Trochodendron aralioides HOM05D004674 ORTHO05D007261 4.5e-08 61.6 52 67.3
arahy.Tifrunner.gnm1.ann1.SG067W Arachis hypogaea HOM05D004674 ORTHO05D007261 5.9e-08 61.2 54 63.0
Glyma.02G053800 Glycine max HOM05D004674 ORTHO05D007261 5.9e-08 61.2 54 66.7
Lj4g0022194 Lotus japonicus HOM05D004674 ORTHO05D007261 5.9e-08 61.2 54 63.0
Psat4g095640 Pisum sativum HOM05D004674 ORTHO05D007261 5.9e-08 61.2 54 64.8
Sabra07G0018000 Salix brachista HOM05D004674 ORTHO05D007261 5.9e-08 61.2 54 63.0
THA.LOC104821303 Tarenaya hassleriana HOM05D004674 ORTHO05D007261 5.9e-08 61.2 52 63.5
TWI09G0580 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 5.9e-08 61.2 54 66.7
arahy.Tifrunner.gnm1.ann1.LKR1Y0 Arachis hypogaea HOM05D004674 ORTHO05D007261 7.7e-08 60.8 54 63.0
CAN.G1019.6 Capsicum annuum HOM05D004674 ORTHO05D007261 7.7e-08 60.8 53 66.0
Duzib264G1222 Durio zibethinus HOM05D004674 ORTHO05D007261 7.7e-08 60.8 54 66.7
FvH4_1g12760 Fragaria vesca HOM05D004674 ORTHO05D007261 7.7e-08 60.8 54 66.7
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 7.7e-08 60.8 54 66.7
FAN23G0750 Fragaria x ananassa HOM05D004674 ORTHO05D007261 7.7e-08 60.8 54 66.7
FAN26G2871 Fragaria x ananassa HOM05D004674 ORTHO05D007261 7.7e-08 60.8 54 66.7
Migut.H02523 Erythranthe guttata HOM05D004674 ORTHO05D007261 1.0e-07 60.5 54 64.8
Lalb_Chr16g0391041 Lupinus albus HOM05D004674 ORTHO05D007261 1.0e-07 60.5 54 64.8
Nn5g29687 Nelumbo nucifera HOM05D004674 ORTHO05D007261 1.0e-07 60.5 52 63.5
VMungo0251G2099 Vigna mungo HOM05D004674 ORTHO05D007261 1.3e-07 60.1 54 66.7
AL8G45110 Arabidopsis lyrata HOM05D004674 ORTHO05D007261 1.7e-07 59.7 52 65.4
Eucgr.I02404 Eucalyptus grandis HOM05D004674 ORTHO05D007261 1.7e-07 59.7 53 64.2
FAN28G0143 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.7e-07 59.7 54 64.8
SalBow8G5199 Salvia bowleyana HOM05D004674 ORTHO05D007261 1.7e-07 59.7 54 63.0
Sopen02g013570 Solanum pennellii HOM05D004674 ORTHO05D007261 1.7e-07 59.7 58 65.5
Aqoxy5G01578 Aquilegia oxysepala HOM05D004674 ORTHO05D007261 2.3e-07 59.3 53 62.3
A07p17540 Brassica napus HOM05D004674 ORTHO05D007261 2.3e-07 59.3 54 61.1
BraA07t29474Z Brassica rapa HOM05D004674 ORTHO05D007261 2.3e-07 59.3 54 61.1
Ca_07052_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 2.3e-07 59.3 54 63.0
Ca_22335_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 2.3e-07 59.3 54 63.0
Ca_22377_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 2.3e-07 59.3 54 63.0
BcaB02g10033 Brassica carinata HOM05D004674 ORTHO05D007261 2.9e-07 58.9 52 63.5
Thhalv10003695m.g Eutrema salsugineum HOM05D004674 ORTHO05D007261 2.9e-07 58.9 52 65.4
Solyc02g062560.3 Solanum lycopersicum HOM05D004674 ORTHO05D007261 2.9e-07 58.9 53 66.0
PGSC0003DMG400015491 Solanum tuberosum HOM05D004674 ORTHO05D007261 2.9e-07 58.9 53 66.0
TPR.G21548 Trifolium pratense HOM05D004674 ORTHO05D007261 2.9e-07 58.9 54 63.0
HPP92_004908 Vanilla planifolia HOM05D004674 ORTHO05D007261 2.9e-07 58.9 52 63.5
Cc07_g09910 Coffea canephora HOM05D004674 ORTHO05D007261 3.8e-07 58.5 54 59.3
HanXRQChr09g0261191 Helianthus annuus HOM05D004674 ORTHO05D007261 3.8e-07 58.5 54 63.0
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 3.8e-07 58.5 54 61.1
COL.COLO4_22029 Corchorus olitorius HOM05D004674 ORTHO05D007261 5.0e-07 58.2 52 65.4
MD15G1256300 Malus domestica HOM05D004674 ORTHO05D007261 5.0e-07 58.2 54 63.0
PSO170G5809 Papaver somniferum HOM05D004674 ORTHO05D007261 5.0e-07 58.2 54 57.4
AT5G66420 Arabidopsis thaliana HOM05D004674 ORTHO05D007261 6.6e-07 57.8 52 61.5
Phvul.003G256200 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 6.6e-07 57.8 54 63.0
Phvul.003G256400 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 6.6e-07 57.8 54 63.0
RcHm_v2.0_Chr2g0100861 Rosa chinensis HOM05D004674 ORTHO05D007261 6.6e-07 57.8 54 64.8
Sed0001139 Sechium edule HOM05D004674 ORTHO05D007261 6.6e-07 57.8 54 57.4
CARHR034750 Cardamine hirsuta HOM05D004674 ORTHO05D007261 8.6e-07 57.4 52 61.5
CiPaw.07G049300 Carya illinoinensis HOM05D004674 ORTHO05D007261 8.6e-07 57.4 54 64.8
Haze_03856 Corylus avellana HOM05D004674 ORTHO05D007261 8.6e-07 57.4 54 63.0
Sc16g0002550 Simmondsia chinensis HOM05D004674 ORTHO05D007261 8.6e-07 57.4 52 63.5
Cfa006896 Carpinus fangiana HOM05D004674 ORTHO05D007261 1.1e-06 57.0 54 63.0
Peaxi162Scf00008g03325 Petunia axillaris HOM05D004674 ORTHO05D007261 1.1e-06 57.0 53 66.0
Sp2g30300 Schrenkiella parvula HOM05D004674 ORTHO05D007261 1.1e-06 57.0 52 61.5
Aa31LG1G14940 Aethionema arabicum HOM05D004674 ORTHO05D007261 1.5e-06 56.6 50 66.0
Carub.0008s2809 Capsella rubella HOM05D004674 ORTHO05D007261 1.5e-06 56.6 52 63.5
ClCG01G019830 Citrullus lanatus HOM05D004674 ORTHO05D007261 1.5e-06 56.6 54 59.3
Lsat_1_v5_gn_4_148020 Lactuca sativa HOM05D004674 ORTHO05D007261 1.5e-06 56.6 52 63.5
PSO407G0425 Papaver somniferum HOM05D004674 ORTHO05D007261 1.9e-06 56.2 54 51.9
PSO170G6195 Papaver somniferum HOM05D004674 ORTHO05D007261 2.5e-06 55.8 54 51.9
ATR0568G133 Amborella trichopoda HOM05D004674 ORTHO05D007261 3.3e-06 55.5 52 61.5
EL10As8g23909 Beta vulgaris HOM05D004674 ORTHO05D007261 3.3e-06 55.5 54 59.3
AUR62004091 Chenopodium quinoa HOM05D004674 ORTHO05D007261 3.3e-06 55.5 54 59.3
Lj4C205T11 Lonicera japonica HOM05D004674 ORTHO05D007261 3.3e-06 55.5 52 59.6
CsaV3_6G046560 Cucumis sativus L. HOM05D004674 ORTHO05D007261 5.5e-06 54.7 54 59.3
Nitab4.5_0001525g0030 Nicotiana tabacum HOM05D004674 ORTHO05D007261 5.5e-06 54.7 53 62.3
Os06g0472400 Oryza sativa ssp. japonica HOM05D004674 ORTHO05D007261 5.5e-06 54.7 54 61.1
unitig_60.g25534 Utricularia gibba HOM05D004674 ORTHO05D007261 7.2e-06 54.3 52 59.6
AUR62007603 Chenopodium quinoa HOM05D004674 ORTHO05D007261 9.5e-06 53.9 54 57.4
Nitab4.5_0000136g0250 Nicotiana tabacum HOM05D004674 ORTHO05D007261 9.5e-06 53.9 58 60.3


User provided reference genes

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