Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 1.2e-195 686.4 372 100.0
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 5.1e-162 574.7 372 86.6
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 5.0e-157 558.1 372 83.6
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 2.5e-148 529.3 372 79.8
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 4.4e-145 518.5 371 78.2
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 1.1e-143 513.8 373 77.5
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 6.9e-143 511.1 372 76.9
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 9.1e-143 510.8 372 77.4
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 1.3e-141 506.9 370 75.9
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 1.3e-141 506.9 373 76.1
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 2.9e-141 505.8 372 75.3
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 2.7e-139 499.2 372 74.7
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 1.8e-138 496.5 372 74.5
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 2.3e-138 496.1 362 76.2
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 2.3e-138 496.1 370 74.6
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 5.2e-138 495.0 370 76.2
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 6.7e-138 494.6 364 74.2
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.5e-137 493.4 372 73.9
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.5e-137 493.4 372 73.9
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 2.0e-137 493.0 362 75.7
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.0e-137 493.0 372 73.9
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 2.0e-137 493.0 370 75.4
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 1.3e-136 490.3 372 73.1
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 2.2e-136 489.6 370 73.8
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.2e-136 489.6 372 73.4
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 4.1e-135 485.3 374 74.3
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 4.1e-135 485.3 372 72.0
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 9.1e-135 484.2 372 71.8
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 7.7e-134 481.1 370 71.1
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 1.7e-133 479.9 360 74.2
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 2.2e-133 479.6 370 72.4
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.9e-132 476.5 368 72.8
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.9e-132 476.5 372 71.8
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.2e-131 473.8 374 71.4
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.6e-131 473.4 370 71.9
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 8.0e-131 471.1 370 70.3
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 8.0e-131 471.1 370 71.1
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 2.3e-130 469.5 370 72.2
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 4.0e-130 468.8 372 71.5
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 6.7e-130 468.0 362 71.8
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 8.8e-130 467.6 370 70.5
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 2.6e-129 466.1 373 69.4
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 1.7e-128 463.4 370 70.5
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 2.8e-128 462.6 370 70.3
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 8.2e-128 461.1 373 68.6
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 4.1e-127 458.8 374 69.3
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 5.3e-127 458.4 348 75.0
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 5.3e-127 458.4 370 69.5
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 7.7e-126 454.5 370 68.9
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.0e-125 454.1 344 73.0
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 1.3e-125 453.8 374 68.4
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 1.7e-125 453.4 372 69.9
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 1.1e-124 450.7 374 67.9
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 2.5e-124 449.5 372 68.0
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 2.1e-123 446.4 369 68.3
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 2.1e-123 446.4 374 69.5
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 4.7e-123 445.3 374 69.5
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 1.2e-121 440.7 372 67.5
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 2.6e-121 439.5 370 68.4
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 3.4e-121 439.1 371 68.5
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 4.8e-120 435.3 370 67.0
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 1.0e-117 427.6 370 65.4
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 3.2e-116 422.5 372 66.7
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 9.5e-116 421.0 374 66.6
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 1.2e-115 420.6 360 67.2
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.2e-115 420.6 374 67.1
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 1.2e-115 420.6 288 77.8
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 1.2e-115 420.6 370 64.6
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 1.6e-115 420.2 348 70.1
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 4.7e-115 418.7 393 63.1
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 1.4e-114 417.2 357 66.7
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 1.4e-114 417.2 371 65.2
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 1.4e-114 417.2 372 65.3
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 6.8e-114 414.8 370 66.5
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 1.5e-113 413.7 374 63.9
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 3.4e-113 412.5 370 64.6
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 8.3e-112 407.9 374 66.0
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 9.2e-111 404.4 374 65.8
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 9.2e-111 404.4 371 62.8
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 1.2e-110 404.1 374 65.0
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.0e-110 403.3 368 63.3
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 9.5e-108 394.4 368 62.5
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 2.1e-107 393.3 285 73.7
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 2.3e-106 389.8 372 62.4
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 5.2e-106 388.7 372 60.2
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 6.8e-106 388.3 363 62.3
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.4e-103 380.6 370 60.8
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.6e-102 377.1 374 59.1
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.7e-101 373.6 287 71.8
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 3.0e-101 372.9 372 59.9
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 8.6e-101 371.3 372 60.5
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 8.6e-101 371.3 372 60.5
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 2.5e-100 369.8 371 61.2
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 3.3e-100 369.4 371 59.8
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 6.2e-99 365.2 261 74.7
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 2.0e-97 360.1 372 57.8
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 2.6e-97 359.8 347 62.2
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 3.4e-97 359.4 370 58.6
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 5.8e-97 358.6 365 59.7
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.3e-96 357.5 372 56.5
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.9e-96 356.3 365 58.9
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 2.9e-96 356.3 372 57.3
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 6.4e-96 355.1 357 57.1
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 1.9e-95 353.6 372 56.5
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 1.2e-94 350.9 354 56.8
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 2.0e-94 350.1 378 56.3
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 1.0e-93 347.8 398 55.3
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 3.0e-93 346.3 377 55.7
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 6.6e-93 345.1 373 57.6
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 6.2e-91 338.6 376 55.1
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 3.1e-90 336.3 368 54.6
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 7.5e-89 331.6 352 56.2
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 1.7e-88 330.5 314 60.2
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.6e-86 323.9 351 57.0
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 7.8e-86 321.6 353 55.2
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.7e-85 320.5 374 53.7
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 3.0e-85 319.7 369 54.7
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 5.6e-84 315.5 370 53.5
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 5.6e-84 315.5 370 53.5
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 7.3e-84 315.1 370 53.0
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 2.1e-83 313.5 347 57.3
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 6.2e-83 312.0 370 52.4
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 1.5e-81 307.4 357 54.6
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 2.0e-81 307.0 277 63.9
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 3.4e-81 306.2 372 51.1
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 3.8e-80 302.8 331 58.0
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 1.1e-79 301.2 372 51.6
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 4.1e-79 299.3 374 51.6
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 9.2e-79 298.1 353 54.1
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 8.6e-77 291.6 357 51.5
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 4.3e-76 289.3 347 49.9
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 9.6e-76 288.1 368 51.9
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 4.7e-75 285.8 352 51.7
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 1.8e-74 283.9 314 57.0
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 2.4e-74 283.5 350 50.3
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 3.1e-74 283.1 312 56.4
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 1.2e-73 281.2 349 51.0
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 2.6e-73 280.0 311 56.3
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 5.8e-73 278.9 362 51.1
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.3e-72 277.7 374 47.9
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 3.8e-72 276.2 260 61.9
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 8.4e-72 275.0 354 48.3
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 3.5e-70 269.6 311 54.0
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 3.9e-69 266.2 349 49.0
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 6.6e-69 265.4 236 65.3
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 1.3e-67 261.2 372 46.8
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 5.8e-65 252.3 318 49.1
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 2.1e-62 243.8 283 51.6
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 1.6e-59 234.2 375 38.4
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 2.8e-59 233.4 350 44.9
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 3.2e-55 219.9 167 77.8
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 9.3e-55 218.4 379 43.3
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 1.6e-54 217.6 367 40.1
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 1.6e-54 217.6 324 44.4
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 3.0e-53 213.4 238 55.0
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 1.1e-52 211.5 378 42.3
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 9.6e-52 208.4 372 36.8
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 2.1e-46 190.7 162 67.3
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 2.3e-45 187.2 174 58.0
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.5e-41 174.5 332 41.3
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 6.5e-40 169.1 205 51.7
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 5.5e-39 166.0 187 57.8
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 1.2e-38 164.9 168 58.9
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 4.7e-30 136.3 349 35.0
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 3.9e-29 133.3 317 36.6
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 1.7e-24 117.9 250 36.4
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 5.0e-24 116.3 309 33.7
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 5.0e-24 116.3 309 33.7
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 7.2e-23 112.5 174 46.0
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 2.9e-16 90.5 57 84.2
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 5.5e-15 86.3 120 47.5
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 9.4e-15 85.5 50 90.0
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 2.1e-14 84.3 317 30.0
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 9.7e-12 75.5 140 41.4
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 1.1e-07 62.0 120 39.2


User provided reference genes

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