Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0051900 Salix brachista HOM05D002254 ORTHO05D005423 3.9e-76 288.1 150 100.0
Potri.005G061860 Populus trichocarpa HOM05D000092 ORTHO05D000042 2.5e-22 109.4 68 88.2
Potri.005G062130 Populus trichocarpa HOM05D000092 ORTHO05D000042 2.7e-21 105.9 68 83.8
Potri.005G061700 Populus trichocarpa HOM05D002254 ORTHO05D005423 4.1e-17 92.0 49 91.8
Potri.007G107100 Populus trichocarpa HOM05D002254 ORTHO05D005423 6.9e-17 91.3 49 89.8
Thecc.01G127100 Theobroma cacao HOM05D002254 ORTHO05D005423 1.7e-15 86.7 49 83.7
TWI31G0091 Tripterygium wilfordii HOM05D002254 ORTHO05D005423 3.8e-15 85.5 48 81.2
DCAR_001358 Daucus carota HOM05D002254 ORTHO05D005423 5.0e-15 85.1 49 83.7
Gohir.D01G167600 Gossypium hirsutum HOM05D002254 ORTHO05D005423 8.5e-15 84.3 49 83.7
Gorai.002G208300 Gossypium raimondii HOM05D002254 ORTHO05D005423 8.5e-15 84.3 49 83.7
Duzib264G0949 Durio zibethinus HOM05D002254 ORTHO05D005423 1.1e-14 84.0 49 83.7
Dinv24771 Davidia involucrata HOM05D002254 ORTHO05D005423 1.4e-14 83.6 49 81.6
Dinv30096 Davidia involucrata HOM05D002254 ORTHO05D005423 1.4e-14 83.6 49 81.6
Gohir.A01G176800 Gossypium hirsutum HOM05D002254 ORTHO05D005423 1.9e-14 83.2 49 81.6
Cfa002830 Carpinus fangiana HOM05D002254 ORTHO05D005423 2.5e-14 82.8 49 85.7
Haze_25127 Corylus avellana HOM05D002254 ORTHO05D005423 2.5e-14 82.8 49 85.7
Duzib147G0903 Durio zibethinus HOM05D002254 ORTHO05D005423 2.5e-14 82.8 49 81.6
Nitab4.5_0000250g0020 Nicotiana tabacum HOM05D002254 ORTHO05D005423 2.5e-14 82.8 49 81.6
Nitab4.5_0004141g0030 Nicotiana tabacum HOM05D002254 ORTHO05D005423 2.5e-14 82.8 49 81.6
GSVIVG01026526001 Vitis vinifera HOM05D002254 ORTHO05D005423 2.5e-14 82.8 49 81.6
MSTRG.2664 Avicennia marina HOM05D002254 ORTHO05D005423 3.2e-14 82.4 47 83.0
PGR102G3355 Punica granatum HOM05D002254 ORTHO05D005423 3.2e-14 82.4 47 80.9
TWI75G1050 Tripterygium wilfordii HOM05D002254 ORTHO05D005423 3.2e-14 82.4 48 79.2
Atru.chr4.828 Acer truncatum HOM05D002254 ORTHO05D005423 4.2e-14 82.0 49 81.6
Ah.01g009370 Amaranthus hybridus HOM05D002254 ORTHO05D005423 1.2e-13 80.5 49 77.6
Carub.0006s0818 Capsella rubella HOM05D002254 ORTHO05D005423 1.2e-13 80.5 49 79.6
AUR62013095 Chenopodium quinoa HOM05D002254 ORTHO05D005423 1.2e-13 80.5 49 75.5
Ciclev10026667m.g Citrus clementina HOM05D002254 ORTHO05D005423 1.2e-13 80.5 49 75.5
AL6G20170 Arabidopsis lyrata HOM05D002254 ORTHO05D005423 1.6e-13 80.1 49 79.6
COL.COLO4_14017 Corchorus olitorius HOM05D002254 ORTHO05D005423 1.6e-13 80.1 49 77.6
Migut.H00743 Erythranthe guttata HOM05D002254 ORTHO05D005423 1.6e-13 80.1 47 78.7
Hma1.2p1_0183F.1_g080930 Hydrangea macrophylla HOM05D002254 ORTHO05D005423 1.6e-13 80.1 49 77.6
Oeu000401.1 Olea europaea HOM05D002254 ORTHO05D005423 2.1e-13 79.7 47 83.0
Oeu038989.2 Olea europaea HOM05D002254 ORTHO05D005423 2.1e-13 79.7 47 83.0
Manes.12G153000 Manihot esculenta HOM05D002254 ORTHO05D005423 2.7e-13 79.3 45 82.2
QL06p029474 Quercus lobata HOM05D002254 ORTHO05D005423 2.7e-13 79.3 48 81.2
vmacro14290 Vaccinium macrocarpon HOM05D002254 ORTHO05D005423 2.7e-13 79.3 47 74.5
arahy.Tifrunner.gnm1.ann1.FM41R7 Arachis hypogaea HOM05D002254 ORTHO05D005423 3.6e-13 79.0 42 85.7
arahy.Tifrunner.gnm1.ann1.N1TEIX Arachis hypogaea HOM05D002254 ORTHO05D005423 3.6e-13 79.0 42 85.7
CARHR203630 Cardamine hirsuta HOM05D002254 ORTHO05D005423 3.6e-13 79.0 49 77.6
Eucgr.H04941 Eucalyptus grandis HOM05D002254 ORTHO05D005423 3.6e-13 79.0 47 74.5
VMungo0647G1804 Vigna mungo HOM05D002254 ORTHO05D005423 3.6e-13 79.0 43 86.0
arahy.Tifrunner.gnm1.ann1.2KW32D Arachis hypogaea HOM05D002254 ORTHO05D005423 4.6e-13 78.6 42 85.7
Cc07_g18050 Coffea canephora HOM05D002254 ORTHO05D005423 4.6e-13 78.6 47 74.5
Lj2A603T35 Lonicera japonica HOM05D002254 ORTHO05D005423 4.6e-13 78.6 47 78.7
Psat5g056880 Pisum sativum HOM05D002254 ORTHO05D005423 4.6e-13 78.6 43 88.4
SalBow4G0817 Salvia bowleyana HOM05D002254 ORTHO05D005423 4.6e-13 78.6 47 76.6
BcaB04g19981 Brassica carinata HOM05D002254 ORTHO05D005423 6.1e-13 78.2 49 75.5
Lsat_1_v5_gn_3_37780 Lactuca sativa HOM05D002254 ORTHO05D005423 6.1e-13 78.2 47 78.7
Medtr3g095900 Medicago truncatula HOM05D002254 ORTHO05D005423 6.1e-13 78.2 51 76.5
Solyc08g067950.3 Solanum lycopersicum HOM05D002254 ORTHO05D005423 6.1e-13 78.2 47 78.7
Sopen08g021870 Solanum pennellii HOM05D002254 ORTHO05D005423 6.1e-13 78.2 47 78.7
Medtr8g103900 Medicago truncatula HOM05D002254 ORTHO05D005423 7.9e-13 77.8 51 76.5
Carub.0008s2544 Capsella rubella HOM05D002254 ORTHO05D005423 1.0e-12 77.4 49 77.6
AT5G09770 Arabidopsis thaliana HOM05D002254 ORTHO05D005423 1.4e-12 77.0 49 77.6
BcaC04g23302 Brassica carinata HOM05D002254 ORTHO05D005423 1.4e-12 77.0 49 73.5
A09p08760 Brassica napus HOM05D002254 ORTHO05D005423 1.4e-12 77.0 49 73.5
C09p09930 Brassica napus HOM05D002254 ORTHO05D005423 1.4e-12 77.0 49 73.5
BolC9t53900H Brassica oleracea HOM05D002254 ORTHO05D005423 1.4e-12 77.0 49 73.5
BraA09t36526Z Brassica rapa HOM05D002254 ORTHO05D005423 1.4e-12 77.0 49 73.5
CSS0030870 Camellia sinensis var. sinensis HOM05D002254 ORTHO05D005423 1.4e-12 77.0 47 74.5
Oeu037798.1 Olea europaea HOM05D002254 ORTHO05D005423 1.4e-12 77.0 47 78.7
AUR62010099 Chenopodium quinoa HOM05D002254 ORTHO05D005423 1.8e-12 76.6 49 73.5
Aa31LG3G17330 Aethionema arabicum HOM05D002254 ORTHO05D005423 2.3e-12 76.3 49 75.5
Oeu047679.1 Olea europaea HOM05D002254 ORTHO05D005423 2.3e-12 76.3 47 78.7
PGSC0003DMG400014486 Solanum tuberosum HOM05D002254 ORTHO05D005423 2.3e-12 76.3 47 76.6
AT5G64650 Arabidopsis thaliana HOM05D002254 ORTHO05D005423 3.0e-12 75.9 49 73.5
Thhalv10014895m.g Eutrema salsugineum HOM05D002254 ORTHO05D005423 3.0e-12 75.9 49 71.4
Peaxi162Scf00105g00116 Petunia axillaris HOM05D002254 ORTHO05D005423 3.0e-12 75.9 47 76.6
PGR142G4456 Punica granatum HOM05D002254 ORTHO05D005423 3.0e-12 75.9 47 78.7
Actinidia06650 Actinidia chinensis HOM05D002254 ORTHO05D005423 3.9e-12 75.5 49 71.4
THA.LOC104799480 Tarenaya hassleriana HOM05D002254 ORTHO05D005423 3.9e-12 75.5 49 75.5
VMungo1309G0562 Vigna mungo HOM05D002254 ORTHO05D005423 3.9e-12 75.5 43 83.7
CANSAT01G2903 Cannabis sativa HOM05D002254 ORTHO05D005423 5.1e-12 75.1 47 76.6
CAN.G679.3 Capsicum annuum HOM05D002254 ORTHO05D005423 5.1e-12 75.1 47 78.7
Phvul.009G148700 Phaseolus vulgaris HOM05D002254 ORTHO05D005423 5.1e-12 75.1 43 83.7
TAR381G1435 Trochodendron aralioides HOM05D002254 ORTHO05D005423 5.1e-12 75.1 45 80.0
Aa31LG1G17310 Aethionema arabicum HOM05D002254 ORTHO05D005423 6.7e-12 74.7 49 71.4
Glyma.06G151700 Glycine max HOM05D002254 ORTHO05D005423 6.7e-12 74.7 43 81.4
Sp2g27710 Schrenkiella parvula HOM05D002254 ORTHO05D005423 6.7e-12 74.7 49 73.5
AL8G42060 Arabidopsis lyrata HOM05D002254 ORTHO05D005423 8.8e-12 74.3 49 73.5
EL10Ac9g21444 Beta vulgaris HOM05D002254 ORTHO05D005423 8.8e-12 74.3 49 75.5
CARHR278620 Cardamine hirsuta HOM05D002254 ORTHO05D005423 8.8e-12 74.3 49 71.4
Sed0005738 Sechium edule HOM05D002254 ORTHO05D005423 8.8e-12 74.3 49 79.6
ClCG01G015530 Citrullus lanatus HOM05D002254 ORTHO05D005423 1.1e-11 73.9 49 79.6
PSO541G1616 Papaver somniferum HOM05D002254 ORTHO05D005423 1.1e-11 73.9 49 69.4
Ca_16929_v3 Cicer arietinum L. HOM05D002254 ORTHO05D005423 1.5e-11 73.6 43 81.4
Sc06g0001400 Simmondsia chinensis HOM05D002254 ORTHO05D005423 1.9e-11 73.2 50 76.0
Glyma.04G214500 Glycine max HOM05D002254 ORTHO05D005423 2.5e-11 72.8 43 79.1
CsaV3_6G041770 Cucumis sativus L. HOM05D002254 ORTHO05D005423 4.3e-11 72.0 49 77.6
PSO675G8066 Papaver somniferum HOM05D002254 ORTHO05D005423 4.3e-11 72.0 49 67.3
Hund06402 Selenicereus undatus HOM05D002254 ORTHO05D005423 4.3e-11 72.0 49 71.4
unitig_8.g4580 Utricularia gibba HOM05D002254 ORTHO05D005423 4.3e-11 72.0 48 75.0
Cpa.g.sc42.118 Carica papaya HOM05D002254 ORTHO05D005423 5.7e-11 71.6 44 77.3
ATR0681G323 Amborella trichopoda HOM05D002254 ORTHO05D005423 9.7e-11 70.9 45 68.9
HanXRQChr05g0152951 Helianthus annuus HOM05D002254 ORTHO05D005423 1.7e-10 70.1 47 72.3
BcaB01g05660 Brassica carinata HOM05D002254 ORTHO05D005423 2.2e-10 69.7 49 69.4
A06p31380 Brassica napus HOM05D002254 ORTHO05D005423 2.2e-10 69.7 47 72.3
MD15G1337900 Malus domestica HOM05D002254 ORTHO05D005423 2.2e-10 69.7 45 71.1
Nn5g28635 Nelumbo nucifera HOM05D002254 ORTHO05D005423 2.2e-10 69.7 44 75.0
MELO3C008044.2 Cucumis melo HOM05D002254 ORTHO05D005423 2.8e-10 69.3 49 73.5
ECA246G3091 Erigeron canadensis HOM05D002254 ORTHO05D005423 2.8e-10 69.3 47 72.3
HanXRQChr08g0236341 Helianthus annuus HOM05D002254 ORTHO05D005423 2.8e-10 69.3 47 72.3
Prupe.6G158000 Prunus persica HOM05D002254 ORTHO05D005423 2.8e-10 69.3 45 75.6
Aqoxy5G00323 Aquilegia oxysepala HOM05D002254 ORTHO05D005423 4.8e-10 68.6 43 74.4
FvH4_3g14560 Fragaria vesca HOM05D002254 ORTHO05D005423 4.8e-10 68.6 50 70.0
FAN16G3547 Fragaria x ananassa HOM05D002254 ORTHO05D005423 4.8e-10 68.6 50 70.0
FAN21G0823 Fragaria x ananassa HOM05D002254 ORTHO05D005423 4.8e-10 68.6 50 70.0
Lj1g0024859 Lotus japonicus HOM05D002254 ORTHO05D005423 4.8e-10 68.6 43 72.1
C03p61540 Brassica napus HOM05D002254 ORTHO05D005423 6.3e-10 68.2 43 74.4
Thhalv10005089m.g Eutrema salsugineum HOM05D002254 ORTHO05D005423 8.2e-10 67.8 49 69.4
BcaB01g05562 Brassica carinata HOM05D002254 ORTHO05D005423 1.1e-09 67.4 49 67.3
C03p04680 Brassica napus HOM05D002254 ORTHO05D005423 1.1e-09 67.4 49 67.3
BolC3t13002H Brassica oleracea HOM05D002254 ORTHO05D005423 1.1e-09 67.4 49 67.3
BolC3t13004H Brassica oleracea HOM05D002254 ORTHO05D005423 1.1e-09 67.4 49 67.3
BraA03t09768Z Brassica rapa HOM05D002254 ORTHO05D005423 1.1e-09 67.4 49 67.3
CiPaw.03G128400 Carya illinoinensis HOM05D002254 ORTHO05D005423 1.1e-09 67.4 44 70.5
BraA06t26080Z Brassica rapa HOM05D002254 ORTHO05D005423 1.4e-09 67.0 43 74.4
THA.LOC104818462 Tarenaya hassleriana HOM05D002254 ORTHO05D005423 1.4e-09 67.0 45 71.1
RcHm_v2.0_Chr5g0024011 Rosa chinensis HOM05D002254 ORTHO05D005423 1.8e-09 66.6 50 66.0
TPR.G34646 Trifolium pratense HOM05D002254 ORTHO05D005423 1.8e-09 66.6 45 68.9
BolC3t18414H Brassica oleracea HOM05D002254 ORTHO05D005423 3.1e-09 65.9 43 72.1
FAN11G0976 Fragaria x ananassa HOM05D002254 ORTHO05D005423 4.1e-09 65.5 50 68.0
Lalb_Chr08g0238481 Lupinus albus HOM05D002254 ORTHO05D005423 5.3e-09 65.1 43 69.8
A03p04230 Brassica napus HOM05D002254 ORTHO05D005423 6.9e-09 64.7 44 70.5
EL10Ac5g11356 Beta vulgaris HOM05D002254 ORTHO05D005423 1.2e-08 63.9 46 67.4
EL10Ac5g11449 Beta vulgaris HOM05D002254 ORTHO05D005423 1.2e-08 63.9 46 67.4
HPP92_013266 Vanilla planifolia HOM05D002254 ORTHO05D005423 2.6e-08 62.8 45 62.2
HPP92_013271 Vanilla planifolia HOM05D002254 ORTHO05D005423 2.6e-08 62.8 45 62.2
CDE04G0736 Ceratophyllum demersum HOM05D002254 ORTHO05D005423 7.7e-08 61.2 41 68.3
Rhsim10G0136900 Rhododendron simsii HOM05D000987 ORTHO05D000831 3.8e-07 58.9 33 78.8
EL10Ac5g12108 Beta vulgaris HOM05D002254 ORTHO05D005423 1.9e-06 56.6 41 63.4
Zm00001eb368030 Zea mays HOM05D002254 ORTHO05D005423 4.2e-06 55.5 47 53.2
Os01g0839300 Oryza sativa ssp. japonica HOM05D002254 ORTHO05D005423 5.5e-06 55.1 47 53.2
Lalb_Chr11g0068331 Lupinus albus HOM05D002254 ORTHO05D005423 9.4e-06 54.3 34 70.6


User provided reference genes

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