Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0051000 Salix brachista HOM05D005694 ORTHO05D007402 1.2e-231 806.2 418 100.0
Potri.005G060500 Populus trichocarpa HOM05D005694 ORTHO05D007402 3.9e-195 684.9 379 93.4
Manes.12G108400 Manihot esculenta HOM05D005694 ORTHO05D007402 2.2e-174 615.9 422 77.0
Prupe.6G229100 Prunus persica HOM05D005694 ORTHO05D007402 1.8e-171 606.3 415 73.0
Thecc.01G063300 Theobroma cacao HOM05D005694 ORTHO05D007402 1.2e-170 603.6 389 76.9
Duzib264G0643 Durio zibethinus HOM05D005694 ORTHO05D007402 8.3e-169 597.4 374 77.5
FvH4_1g16760 Fragaria vesca HOM05D005694 ORTHO05D007402 2.4e-168 595.9 411 72.7
Cpa.g.sc6.99 Carica papaya HOM05D005694 ORTHO05D007402 2.0e-167 592.8 421 72.2
FAN19G0282 Fragaria x ananassa HOM05D005694 ORTHO05D007402 4.5e-167 591.7 411 73.5
FAN26G1197 Fragaria x ananassa HOM05D005694 ORTHO05D007402 5.9e-167 591.3 411 73.5
RcHm_v2.0_Chr2g0106661 Rosa chinensis HOM05D005694 ORTHO05D007402 3.8e-166 588.6 402 71.4
FAN23G2399 Fragaria x ananassa HOM05D005694 ORTHO05D007402 1.1e-165 587.0 409 71.4
Ciclev10025664m.g Citrus clementina HOM05D005694 ORTHO05D007402 4.3e-165 585.1 406 73.6
QL06p040237 Quercus lobata HOM05D005694 ORTHO05D007402 7.3e-165 584.3 417 71.5
Gorai.007G218000 Gossypium raimondii HOM05D005694 ORTHO05D007402 4.7e-164 581.6 400 72.2
Cfa004061 Carpinus fangiana HOM05D005694 ORTHO05D007402 8.0e-164 580.9 403 72.7
COL.COLO4_11482 Corchorus olitorius HOM05D005694 ORTHO05D007402 8.0e-164 580.9 391 73.1
Gohir.D11G203300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 8.0e-164 580.9 375 74.9
Haze_15351 Corylus avellana HOM05D005694 ORTHO05D007402 1.4e-163 580.1 412 72.3
Atru.chr3.251 Acer truncatum HOM05D005694 ORTHO05D007402 1.2e-162 577.0 373 78.6
CiPaw.01G012900 Carya illinoinensis HOM05D005694 ORTHO05D007402 4.4e-162 575.1 378 76.5
arahy.Tifrunner.gnm1.ann1.ZT89Y7 Arachis hypogaea HOM05D005694 ORTHO05D007402 5.7e-162 574.7 408 69.4
MELO3C007585.2 Cucumis melo HOM05D005694 ORTHO05D007402 9.8e-162 573.9 408 69.1
Glyma.17G167200 Glycine max HOM05D005694 ORTHO05D007402 3.7e-161 572.0 378 73.5
CsaV3_6G043550 Cucumis sativus L. HOM05D005694 ORTHO05D007402 6.4e-161 571.2 407 69.3
ClCG01G017080 Citrullus lanatus HOM05D005694 ORTHO05D007402 8.3e-161 570.9 416 69.7
Sopen03g008170 Solanum pennellii HOM05D005694 ORTHO05D007402 2.0e-159 566.2 381 71.7
SGA_v2.0_scaffold143G35788 Striga asiatica HOM05D005694 ORTHO05D007402 2.0e-159 566.2 381 71.1
MD02G1178800 Malus domestica HOM05D005694 ORTHO05D007402 1.0e-158 563.9 359 76.0
Solyc03g044190.3 Solanum lycopersicum HOM05D005694 ORTHO05D007402 1.0e-158 563.9 380 71.8
THA.LOC104819246 Tarenaya hassleriana HOM05D005694 ORTHO05D007402 1.0e-158 563.9 378 74.9
Lj4g0009127 Lotus japonicus HOM05D005694 ORTHO05D007402 1.7e-158 563.1 390 70.3
Oeu037163.1 Olea europaea HOM05D005694 ORTHO05D007402 1.7e-158 563.1 372 72.8
Sed0004561 Sechium edule HOM05D005694 ORTHO05D007402 1.7e-158 563.1 416 66.8
Lalb_Chr16g0388811 Lupinus albus HOM05D005694 ORTHO05D007402 2.3e-158 562.8 375 71.5
CANSAT25G2140 Cannabis sativa HOM05D005694 ORTHO05D007402 3.0e-158 562.4 422 67.1
PGR004G1079 Punica granatum HOM05D005694 ORTHO05D007402 3.9e-158 562.0 397 70.0
MSTRG.2849 Avicennia marina HOM05D005694 ORTHO05D007402 5.0e-158 561.6 391 69.6
Sp2g29370 Schrenkiella parvula HOM05D005694 ORTHO05D007402 5.0e-158 561.6 370 74.3
CANSAT25G0291 Cannabis sativa HOM05D005694 ORTHO05D007402 5.6e-157 558.1 380 71.3
PGSC0003DMG400014873 Solanum tuberosum HOM05D005694 ORTHO05D007402 9.5e-157 557.4 376 71.3
CSS0006569 Camellia sinensis var. sinensis HOM05D005694 ORTHO05D007402 1.2e-156 557.0 367 73.3
EL10Ac6g15690 Beta vulgaris HOM05D005694 ORTHO05D007402 2.1e-156 556.2 402 68.2
BcaC05g29844 Brassica carinata HOM05D005694 ORTHO05D007402 2.8e-156 555.8 370 73.2
BolC5t34672H Brassica oleracea HOM05D005694 ORTHO05D007402 2.8e-156 555.8 370 73.2
BraA05t22832Z Brassica rapa HOM05D005694 ORTHO05D007402 6.2e-156 554.7 370 73.2
Thhalv10004317m.g Eutrema salsugineum HOM05D005694 ORTHO05D007402 1.0e-155 553.9 366 73.5
AL8G44040 Arabidopsis lyrata HOM05D005694 ORTHO05D007402 1.8e-155 553.1 370 71.9
A05p41050 Brassica napus HOM05D005694 ORTHO05D007402 5.2e-155 551.6 370 72.7
arahy.Tifrunner.gnm1.ann1.MA1EVV Arachis hypogaea HOM05D005694 ORTHO05D007402 8.9e-155 550.8 452 61.5
Migut.H00394 Erythranthe guttata HOM05D005694 ORTHO05D007402 2.6e-154 549.3 390 69.2
Hund16366 Selenicereus undatus HOM05D005694 ORTHO05D007402 3.4e-154 548.9 368 72.6
BcaB06g28844 Brassica carinata HOM05D005694 ORTHO05D007402 9.8e-154 547.4 416 67.3
Peaxi162Scf00365g00618 Petunia axillaris HOM05D005694 ORTHO05D007402 9.8e-154 547.4 383 69.2
Nitab4.5_0002657g0010 Nicotiana tabacum HOM05D005694 ORTHO05D007402 1.7e-153 546.6 385 69.6
Lsat_1_v5_gn_3_88661 Lactuca sativa HOM05D005694 ORTHO05D007402 2.2e-153 546.2 394 69.3
Carub.0008s2721 Capsella rubella HOM05D005694 ORTHO05D007402 4.9e-153 545.0 370 71.9
Gohir.A11G220300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 8.3e-153 544.3 398 68.8
CARHR280330 Cardamine hirsuta HOM05D005694 ORTHO05D007402 2.4e-152 542.7 370 71.6
AUR62038254 Chenopodium quinoa HOM05D005694 ORTHO05D007402 2.4e-152 542.7 399 65.9
Duzib147G1433 Durio zibethinus HOM05D005694 ORTHO05D007402 4.1e-152 542.0 379 71.0
Nn1g04704 Nelumbo nucifera HOM05D005694 ORTHO05D007402 5.4e-152 541.6 363 72.7
HanXRQChr12g0377261 Helianthus annuus HOM05D005694 ORTHO05D007402 7.0e-152 541.2 376 70.5
Medtr4g094962 Medicago truncatula HOM05D005694 ORTHO05D007402 1.2e-151 540.4 378 70.1
Actinidia12019 Actinidia chinensis HOM05D005694 ORTHO05D007402 1.6e-151 540.0 364 72.3
Nitab4.5_0003962g0030 Nicotiana tabacum HOM05D005694 ORTHO05D007402 2.7e-151 539.3 408 66.4
C05p60220 Brassica napus HOM05D005694 ORTHO05D007402 3.5e-151 538.9 395 68.1
Psat4g084360 Pisum sativum HOM05D005694 ORTHO05D007402 4.6e-151 538.5 413 64.9
AT5G67290 Arabidopsis thaliana HOM05D005694 ORTHO05D007402 6.0e-151 538.1 370 71.4
Aqoxy6G02871 Aquilegia oxysepala HOM05D005694 ORTHO05D007402 1.7e-150 536.6 385 69.1
Ca_22124_v3 Cicer arietinum L. HOM05D005694 ORTHO05D007402 2.3e-150 536.2 379 68.1
AUR62003938 Chenopodium quinoa HOM05D005694 ORTHO05D007402 5.0e-150 535.0 423 63.4
TAR625G0317 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.1e-149 533.9 379 69.4
Aa31LG1G15820 Aethionema arabicum HOM05D005694 ORTHO05D007402 3.3e-149 532.3 370 69.7
VMungo0251G0564 Vigna mungo HOM05D005694 ORTHO05D007402 4.3e-149 531.9 385 67.8
DCAR_025759 Daucus carota HOM05D005694 ORTHO05D007402 9.5e-149 530.8 349 72.5
Phvul.003G240300 Phaseolus vulgaris HOM05D005694 ORTHO05D007402 4.7e-148 528.5 374 68.2
ECA246G1807 Erigeron canadensis HOM05D005694 ORTHO05D007402 8.1e-148 527.7 362 71.3
TPR.G23863 Trifolium pratense HOM05D005694 ORTHO05D007402 1.4e-147 526.9 377 68.4
PSO541G0377 Papaver somniferum HOM05D005694 ORTHO05D007402 3.1e-147 525.8 369 69.4
Lj4g0018653 Lotus japonicus HOM05D005694 ORTHO05D007402 4.0e-147 525.4 379 72.0
Rhsim10G0112600 Rhododendron simsii HOM05D005694 ORTHO05D007402 8.9e-147 524.2 422 62.8
TAR625G0863 Trochodendron aralioides HOM05D005694 ORTHO05D007402 9.8e-146 520.8 368 69.8
TAR381G0027 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.1e-144 517.3 370 69.5
TAR381G0285 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.1e-144 517.3 370 69.5
Glyma.05G097800 Glycine max HOM05D005694 ORTHO05D007402 2.4e-144 516.2 382 68.1
PSO675G2151 Papaver somniferum HOM05D005694 ORTHO05D007402 4.3e-141 505.4 414 62.3
Eucgr.I00761 Eucalyptus grandis HOM05D005694 ORTHO05D007402 7.3e-141 504.6 378 68.3
Eucgr.I00787 Eucalyptus grandis HOM05D005694 ORTHO05D007402 9.5e-141 504.2 378 68.5
unitig_46.g18707 Utricularia gibba HOM05D005694 ORTHO05D007402 1.4e-139 500.4 372 64.0
Dinv26866 Davidia involucrata HOM05D005694 ORTHO05D007402 2.3e-139 499.6 369 68.6
Sc16g0005230 Simmondsia chinensis HOM05D005694 ORTHO05D007402 5.2e-139 498.4 379 63.1
Cc11_g04760 Coffea canephora HOM05D005694 ORTHO05D007402 3.5e-135 485.7 376 65.2
vmacro05254 Vaccinium macrocarpon HOM05D005694 ORTHO05D007402 1.3e-134 483.8 395 66.3
Sc16g0005220 Simmondsia chinensis HOM05D005694 ORTHO05D007402 2.7e-127 459.5 379 59.6
CDE06G0326 Ceratophyllum demersum HOM05D005694 ORTHO05D007402 3.5e-127 459.1 387 60.2
Dinv30033 Davidia involucrata HOM05D005694 ORTHO05D007402 2.3e-126 456.4 364 64.3
ATR1098G030 Amborella trichopoda HOM05D005694 ORTHO05D007402 1.9e-125 453.4 371 60.6
HPP92_017733 Vanilla planifolia HOM05D005694 ORTHO05D007402 2.0e-122 443.4 366 61.7
Os07g0155100 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 2.1e-119 433.3 389 57.1
Zm00001eb300250 Zea mays HOM05D005694 ORTHO05D007402 3.5e-119 432.6 382 57.6
Mapoly0178s0017 Marchantia polymorpha HOM05D005694 ORTHO05D007402 3.0e-118 429.5 371 58.0
HanXRQChr02g0044351 Helianthus annuus HOM05D005694 ORTHO05D007402 8.7e-118 427.9 371 58.0
SEGI_26559 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 4.0e-115 419.1 374 57.0
AagrBONN_evm.TU.Sc2ySwM_117.3787 Anthoceros agrestis HOM05D005694 ORTHO05D007402 1.3e-113 414.1 386 54.9
ECA238G4251 Erigeron canadensis HOM05D005694 ORTHO05D007402 1.9e-112 410.2 372 57.0
Pp3c14_12180 Physcomitrium patens HOM05D005694 ORTHO05D007402 1.1e-109 401.0 382 55.2
SMO351G0208 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 1.1e-107 394.4 375 52.8
SMO367G0384 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 2.1e-103 380.2 402 50.2
HPP92_017700 Vanilla planifolia HOM05D005694 ORTHO05D007402 2.0e-98 363.6 316 59.8
Lj7C77T1 Lonicera japonica HOM05D005694 ORTHO05D007402 7.2e-96 355.1 246 72.4
CAN.G572.58 Capsicum annuum HOM05D005694 ORTHO05D007402 1.4e-91 340.9 266 64.3
SEGI_01647 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 1.5e-90 337.4 370 49.5
Mapoly0178s0018 Marchantia polymorpha HOM05D005694 ORTHO05D007402 3.4e-90 336.3 314 55.7
Aa31LG1G15830 Aethionema arabicum HOM05D005694 ORTHO05D007402 9.4e-88 328.2 223 67.3
FAN28G1711 Fragaria x ananassa HOM05D005694 ORTHO05D007402 5.7e-85 318.9 179 81.6
FAN28G1889 Fragaria x ananassa HOM05D005694 ORTHO05D007402 5.7e-85 318.9 179 81.6
Cre16.g671450 Chlamydomonas reinhardtii HOM05D005694 ORTHO05D007402 5.3e-75 285.8 390 41.0
MCO03G407 Micromonas commoda HOM05D005694 ORTHO05D007402 9.8e-61 238.4 377 41.1
Actinidia36463 Actinidia chinensis HOM05D005694 ORTHO05D007402 3.5e-58 229.9 170 63.5
MCO09G374 Micromonas commoda HOM05D005694 ORTHO05D007402 4.4e-53 213.0 438 36.1
Lj7A77T5 Lonicera japonica HOM05D005694 ORTHO05D007402 2.5e-48 197.2 117 74.4
Aa31LG1G15840 Aethionema arabicum HOM05D005694 ORTHO05D007402 1.1e-40 171.8 103 82.5
Cfa023451 Carpinus fangiana HOM05D000115 ORTHO05D005317 5.6e-40 169.5 398 32.9
Aa31LG1G18440 Aethionema arabicum HOM05D005694 ORTHO05D007402 2.1e-39 167.5 142 62.7
Aa31sc2295G20 Aethionema arabicum HOM05D005694 ORTHO05D007402 5.2e-38 162.9 121 68.6
Medtr8g072720 Medicago truncatula HOM05D005694 ORTHO05D007402 4.7e-31 139.8 83 77.1
PRCOL_00002834 Prasinoderma coloniale HOM05D005694 ORTHO05D007402 3.4e-29 133.7 392 29.1
BcaNung00805 Brassica carinata HOM05D005694 ORTHO05D007402 1.9e-11 74.7 76 52.6
Aa31LG1G18450 Aethionema arabicum HOM05D005694 ORTHO05D007402 3.5e-10 70.5 73 45.2
Aa31sc2295G10 Aethionema arabicum HOM05D005694 ORTHO05D007402 3.5e-10 70.5 73 45.2
Cfa026332 Carpinus fangiana HOM05D005694 ORTHO05D123404 1.3e-09 68.6 322 25.2
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 4.3e-08 63.5 381 23.1
Os01g0594800 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 2.8e-07 60.8 93 39.8


User provided reference genes

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