Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0047100 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 3545.7 1824 100.0
Potri.005G053700 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 3338.9 1824 94.7
Potri.013G041201 Populus trichocarpa HOM05D004252 ORTHO05D005101 0.0e+00 3069.3 1826 87.7
Sabra13G0038000 Salix brachista HOM05D004252 ORTHO05D005101 0.0e+00 3023.4 1862 85.0
Manes.09G152800 Manihot esculenta HOM05D004252 ORTHO05D005101 0.0e+00 2921.7 1831 82.6
Haze_04358 Corylus avellana HOM05D004252 ORTHO05D005101 0.0e+00 2759.9 1877 77.2
Cfa006427 Carpinus fangiana HOM05D004252 ORTHO05D005101 0.0e+00 2746.8 1841 78.0
QL03p026982 Quercus lobata HOM05D004252 ORTHO05D005101 0.0e+00 2733.7 1858 77.2
COL.COLO4_15351 Corchorus olitorius HOM05D004252 ORTHO05D005101 0.0e+00 2714.1 1810 78.0
Thecc.05G283200 Theobroma cacao HOM05D004252 ORTHO05D005101 0.0e+00 2712.6 1816 78.2
Dinv20302 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 2705.6 1836 76.7
Ciclev10000014m.g Citrus clementina HOM05D004252 ORTHO05D005101 0.0e+00 2697.5 1846 76.5
Prupe.6G343600 Prunus persica HOM05D004252 ORTHO05D005101 0.0e+00 2685.6 1836 77.2
CiPaw.08G123300 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 2685.2 1848 76.5
Duzib128G1785 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2674.8 1822 76.9
CSS0026350 Camellia sinensis var. sinensis HOM05D004252 ORTHO05D005101 0.0e+00 2666.3 1834 75.9
CANSAT54G1217 Cannabis sativa HOM05D004252 ORTHO05D005101 0.0e+00 2656.3 1828 76.1
TWI12G0933 Tripterygium wilfordii HOM05D004252 ORTHO05D005101 0.0e+00 2654.0 1838 76.1
Gorai.004G246800 Gossypium raimondii HOM05D004252 ORTHO05D005101 0.0e+00 2645.5 1815 76.6
Gohir.D08G232300 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 2636.3 1815 76.4
Duzib177G1152 Durio zibethinus HOM05D004252 ORTHO05D005101 0.0e+00 2633.2 1811 76.6
MD12G1241600 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2624.4 1824 75.4
TAR362G1238 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2618.2 1844 74.8
RcHm_v2.0_Chr3g0451091 Rosa chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2614.0 1835 75.4
MD04G1224900 Malus domestica HOM05D004252 ORTHO05D005101 0.0e+00 2609.3 1839 74.8
GSVIVG01021781001 Vitis vinifera HOM05D004252 ORTHO05D005101 0.0e+00 2586.6 1834 74.2
TAR633G0655 Trochodendron aralioides HOM05D004252 ORTHO05D005101 0.0e+00 2568.1 1845 74.1
FvH4_6g02880 Fragaria vesca HOM05D004252 ORTHO05D005101 0.0e+00 2563.9 1843 74.3
Nn3g19509 Nelumbo nucifera HOM05D004252 ORTHO05D005101 0.0e+00 2556.9 1843 72.5
FAN09G2874 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2541.5 1848 73.9
CsaV3_2G004140 Cucumis sativus L. HOM05D004252 ORTHO05D005101 0.0e+00 2541.1 1833 73.3
VMungo0540G0159 Vigna mungo HOM05D004252 ORTHO05D005101 0.0e+00 2537.7 1828 72.2
Phvul.006G101900 Phaseolus vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2535.8 1830 71.7
Glyma.19G245100 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2534.2 1826 71.7
FAN02G2888 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2526.5 1849 73.6
arahy.Tifrunner.gnm1.ann1.9CBY7M Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2512.6 1829 71.9
FAN05G2119 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 2509.2 1849 73.7
MELO3C004380.2 Cucumis melo HOM05D004252 ORTHO05D005101 0.0e+00 2508.0 1899 70.7
Glyma.03G247300 Glycine max HOM05D004252 ORTHO05D005101 0.0e+00 2506.9 1826 70.9
Sed0020402 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2503.4 1833 71.6
arahy.Tifrunner.gnm1.ann1.39XKQR Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 2499.5 1824 71.9
PGR142G2894 Punica granatum HOM05D004252 ORTHO05D005101 0.0e+00 2490.7 1844 72.9
Sed0025221 Sechium edule HOM05D004252 ORTHO05D005101 0.0e+00 2482.2 1832 71.0
Lalb_Chr04g0262241 Lupinus albus HOM05D004252 ORTHO05D005101 0.0e+00 2475.3 1833 70.4
Lj1g0020341 Lotus japonicus HOM05D004252 ORTHO05D005101 0.0e+00 2472.6 1830 71.0
ClCG02G016630 Citrullus lanatus HOM05D004252 ORTHO05D005101 0.0e+00 2464.9 1832 71.8
Lj1A1079G39 Lonicera japonica HOM05D004252 ORTHO05D005101 0.0e+00 2460.3 1861 71.5
Psat3g007080 Pisum sativum HOM05D004252 ORTHO05D005101 0.0e+00 2449.9 1834 70.8
Rhsim04G0066800 Rhododendron simsii HOM05D004252 ORTHO05D005101 0.0e+00 2442.2 1853 71.1
Cc02_g30700 Coffea canephora HOM05D004252 ORTHO05D005101 0.0e+00 2437.5 1808 71.0
Actinidia32806 Actinidia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2436.4 1791 72.5
vmacro20358 Vaccinium macrocarpon HOM05D004252 ORTHO05D005101 0.0e+00 2436.0 1913 69.1
Ca_09423_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2435.2 1840 70.0
Ca_29790_v3 Cicer arietinum L. HOM05D004252 ORTHO05D005101 0.0e+00 2435.2 1840 70.0
Medtr7g115190 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2432.5 1832 70.4
PSO832G2970 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2418.3 1840 69.8
PSO210G6431 Papaver somniferum HOM05D004252 ORTHO05D005101 0.0e+00 2416.7 1840 69.7
Peaxi162Scf00282g00418 Petunia axillaris HOM05D004252 ORTHO05D005101 0.0e+00 2407.9 1831 69.9
Solyc01g097320.3 Solanum lycopersicum HOM05D004252 ORTHO05D005101 0.0e+00 2403.2 1838 69.3
Sc20g0000330 Simmondsia chinensis HOM05D004252 ORTHO05D005101 0.0e+00 2366.3 1827 69.2
Eucgr.B02119 Eucalyptus grandis HOM05D004252 ORTHO05D005101 0.0e+00 2358.9 1832 69.8
Hund06974 Selenicereus undatus HOM05D004252 ORTHO05D005101 0.0e+00 2353.6 1842 69.0
AUR62004951 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2352.8 1836 69.4
TPR.G6924 Trifolium pratense HOM05D004252 ORTHO05D005101 0.0e+00 2334.3 1834 68.4
DCAR_023243 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2323.1 1840 67.7
EL10Ac4g09148 Beta vulgaris HOM05D004252 ORTHO05D005101 0.0e+00 2319.7 1841 68.2
SalBow3G2512 Salvia bowleyana HOM05D004252 ORTHO05D005101 0.0e+00 2303.5 1835 67.5
Medtr1g087060 Medicago truncatula HOM05D004252 ORTHO05D005101 0.0e+00 2293.1 1829 67.2
Aqoxy5G01125 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2276.9 1840 66.4
Migut.B01091 Erythranthe guttata HOM05D004252 ORTHO05D005101 0.0e+00 2265.0 1859 65.8
DCAR_014751 Daucus carota HOM05D004252 ORTHO05D005101 0.0e+00 2259.2 1826 67.0
Sopen01g040990 Solanum pennellii HOM05D004252 ORTHO05D005101 0.0e+00 2254.9 1738 68.8
ECA240G2739 Erigeron canadensis HOM05D004252 ORTHO05D005101 0.0e+00 2235.3 1831 65.9
Aqoxy6G01279 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 0.0e+00 2221.8 1843 64.9
THA.LOC104821672 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2220.3 1823 66.6
THA.LOC104818630 Tarenaya hassleriana HOM05D004252 ORTHO05D005101 0.0e+00 2182.9 1821 66.2
HanXRQChr13g0411361 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2164.0 1840 64.4
AT3G04740 Arabidopsis thaliana HOM05D004252 ORTHO05D005101 0.0e+00 2159.8 1829 65.6
AL3G14870 Arabidopsis lyrata HOM05D004252 ORTHO05D005101 0.0e+00 2150.2 1826 65.7
HanXRQChr03g0080781 Helianthus annuus HOM05D004252 ORTHO05D005101 0.0e+00 2146.3 1832 64.6
Thhalv10019885m.g Eutrema salsugineum HOM05D004252 ORTHO05D005101 0.0e+00 2136.7 1833 65.3
Sp3g03590 Schrenkiella parvula HOM05D004252 ORTHO05D005101 0.0e+00 2124.7 1828 64.7
Aa31LG5G15140 Aethionema arabicum HOM05D004252 ORTHO05D005101 0.0e+00 2123.6 1825 63.9
Carub.0003s0391 Capsella rubella HOM05D004252 ORTHO05D005101 0.0e+00 2111.6 1828 64.8
AUR62001006 Chenopodium quinoa HOM05D004252 ORTHO05D005101 0.0e+00 2105.9 1842 63.7
Nitab4.5_0001592g0060 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 2061.2 1767 63.6
Lsat_1_v5_gn_5_53600 Lactuca sativa HOM05D004252 ORTHO05D005101 0.0e+00 2042.7 1832 62.8
ATR0665G632 Amborella trichopoda HOM05D004252 ORTHO05D005101 0.0e+00 2026.9 1873 60.3
CDE06G0814 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 2018.8 1829 60.6
C05p62540 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1996.9 1822 61.9
BolC5t34909H Brassica oleracea HOM05D004252 ORTHO05D005101 0.0e+00 1996.1 1822 61.9
A05p42820 Brassica napus HOM05D004252 ORTHO05D005101 0.0e+00 1991.1 1818 62.0
BraA05t22970Z Brassica rapa HOM05D004252 ORTHO05D005101 0.0e+00 1977.2 1839 61.2
unitig_699.g19676 Utricularia gibba HOM05D004252 ORTHO05D005101 0.0e+00 1974.5 1838 60.0
Gohir.A08G215700 Gossypium hirsutum HOM05D004252 ORTHO05D005101 0.0e+00 1880.5 1367 72.1
Os09g0281900 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 0.0e+00 1822.4 1852 55.4
Zm00001eb097360 Zea mays HOM05D004252 ORTHO05D005101 0.0e+00 1788.1 1846 54.4
Oeu002657.3 Olea europaea HOM05D004252 ORTHO05D005101 0.0e+00 1771.5 1494 65.5
Dinv08153 Davidia involucrata HOM05D004252 ORTHO05D005101 0.0e+00 1699.5 1218 72.4
arahy.Tifrunner.gnm1.ann1.YD0KDM Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1697.6 1336 66.8
arahy.Tifrunner.gnm1.ann1.QZ0BKE Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1692.2 1327 67.0
HPP92_026425 Vanilla planifolia HOM05D004252 ORTHO05D005101 0.0e+00 1683.3 1722 55.1
Nitab4.5_0008996g0010 Nicotiana tabacum HOM05D004252 ORTHO05D005101 0.0e+00 1676.4 1796 54.2
CiPaw.07G067400 Carya illinoinensis HOM05D004252 ORTHO05D005101 0.0e+00 1672.1 1571 61.2
Ah.06g192370 Amaranthus hybridus HOM05D004252 ORTHO05D005101 0.0e+00 1583.2 1376 63.9
CAN.G134.97 Capsicum annuum HOM05D004252 ORTHO05D005101 0.0e+00 1531.5 1303 62.9
BcaB04g19300 Brassica carinata HOM05D004252 ORTHO05D005101 0.0e+00 1511.9 1788 52.3
arahy.Tifrunner.gnm1.ann1.795G7S Arachis hypogaea HOM05D004252 ORTHO05D005101 0.0e+00 1488.0 1185 65.7
Mapoly0110s0011 Marchantia polymorpha HOM05D004252 ORTHO05D005101 0.0e+00 1385.9 1997 43.7
CARHR078990 Cardamine hirsuta HOM05D004252 ORTHO05D005101 0.0e+00 1306.2 1212 63.2
SEGI_19302 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 0.0e+00 1261.9 1394 53.8
SMO118G0536 Selaginella moellendorffii HOM05D004252 ORTHO05D005101 0.0e+00 1253.8 1838 43.1
SGA_v2.0_scaffold172G38984 Striga asiatica HOM05D004252 ORTHO05D005101 0.0e+00 1235.3 1003 66.7
AagrBONN_evm.TU.Sc2ySwM_368.2529 Anthoceros agrestis HOM05D004252 ORTHO05D005101 0.0e+00 1221.1 1937 41.1
Pp3c9_5080 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1211.4 1942 40.5
CDE02G1705 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 0.0e+00 1209.5 1134 60.0
Pp3c9_4280 Physcomitrium patens HOM05D004252 ORTHO05D005101 0.0e+00 1177.2 1988 39.2
FAN14G3887 Fragaria x ananassa HOM05D004252 ORTHO05D005101 0.0e+00 1131.3 867 69.2
Oeu027473.1 Olea europaea HOM05D004252 ORTHO05D005101 3.1e-268 929.9 1386 43.8
SHI18417 Sapria himalayana HOM05D004252 ORTHO05D005101 1.9e-262 910.6 1479 40.9
Cpa.g.sc2756.2 Carica papaya HOM05D004252 ORTHO05D005101 6.7e-223 779.2 526 77.8
CDE02G2007 Ceratophyllum demersum HOM05D004252 ORTHO05D005101 3.1e-220 770.4 613 63.9
CAN.G134.96 Capsicum annuum HOM05D004252 ORTHO05D005101 1.3e-210 738.4 484 78.9
arahy.Tifrunner.gnm1.ann1.8T8W7S Arachis hypogaea HOM05D004252 ORTHO05D005101 5.9e-195 686.4 609 60.1
Ah.06g192380 Amaranthus hybridus HOM05D004252 ORTHO05D005101 1.1e-193 682.2 466 75.8
Aqoxy1G03371 Aquilegia oxysepala HOM05D004252 ORTHO05D005101 1.7e-186 658.3 488 73.0
arahy.Tifrunner.gnm1.ann1.E2R4RP Arachis hypogaea HOM05D004252 ORTHO05D005101 5.0e-178 630.2 555 61.8
Atru.chr2.822 Acer truncatum HOM05D004252 ORTHO05D005101 2.5e-177 627.9 384 86.2
Atru.chr2.824 Acer truncatum HOM05D004252 ORTHO05D005101 1.4e-175 622.1 487 69.6
SHI18418 Sapria himalayana HOM05D004252 ORTHO05D005101 5.6e-169 600.1 627 54.4
Cpa.g.c42029 Carica papaya HOM05D004252 ORTHO05D005101 3.4e-166 590.9 354 82.2
Dinv08152 Davidia involucrata HOM05D004252 ORTHO05D005101 7.3e-161 573.2 336 88.1
Os08g0332800 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 9.9e-158 562.8 424 66.3
Oeu027472.1 Olea europaea HOM05D004252 ORTHO05D005101 3.7e-157 560.8 361 77.0
Os08g0333000 Oryza sativa ssp. japonica HOM05D004252 ORTHO05D005101 2.3e-138 498.4 394 70.6
Oeu021056.1 Olea europaea HOM05D004252 ORTHO05D005101 3.6e-136 491.1 324 72.8
Cpa.g.sc2756.3 Carica papaya HOM05D004252 ORTHO05D005101 9.3e-132 476.5 430 61.9
arahy.Tifrunner.gnm1.ann1.82F4VT Arachis hypogaea HOM05D004252 ORTHO05D005101 1.0e-125 456.4 401 60.3
Cpa.g.sc2756.1 Carica papaya HOM05D004252 ORTHO05D005101 2.1e-120 438.7 267 90.6
Atru.chr2.823 Acer truncatum HOM05D004252 ORTHO05D005101 4.2e-116 424.5 259 83.0
HanXRQChr10g0278361 Helianthus annuus HOM05D004252 ORTHO05D005101 1.7e-77 296.2 308 59.7
HanXRQChr01g0016721 Helianthus annuus HOM05D004252 ORTHO05D005101 2.5e-76 292.4 303 57.8
HanXRQChr13g0410791 Helianthus annuus HOM05D004252 ORTHO05D005101 2.5e-76 292.4 302 57.9
Atru.chr2.825 Acer truncatum HOM05D004252 ORTHO05D005101 7.3e-52 211.1 143 73.4
Atru.chr2.826 Acer truncatum HOM05D004252 ORTHO05D005101 2.2e-48 199.5 123 82.1
Cpa.g.sc1346.1 Carica papaya HOM05D004252 ORTHO05D005101 4.9e-24 118.6 70 88.6
SEGI_18631 Sequoiadendron giganteum HOM05D000173 ORTHO05D006747 1.6e-22 113.6 141 46.1
Sopen00g013550 Solanum pennellii HOM05D004252 ORTHO05D005101 2.5e-20 106.3 71 76.1
CAN.G1116.5 Capsicum annuum HOM05D004252 ORTHO05D005101 1.8e-18 100.1 70 71.4
PRCOL_00001722 Prasinoderma coloniale HOM05D000936 ORTHO05D005107 2.4e-18 99.8 633 21.8
Psat3g129120 Pisum sativum HOM05D004252 ORTHO05D005101 5.5e-15 88.6 70 64.3
DCAR_027576 Daucus carota HOM05D004252 ORTHO05D005101 1.6e-14 87.0 95 55.8
Psat3g129080 Pisum sativum HOM05D004252 ORTHO05D005101 1.6e-14 87.0 70 62.9
SEGI_17147 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 3.5e-14 85.9 66 65.2
MCO11G870 Micromonas commoda HOM05D004252 ORTHO05D005101 6.0e-14 85.1 203 28.6
SEGI_02854 Sequoiadendron giganteum HOM05D004252 ORTHO05D005101 1.0e-13 84.3 70 61.4
Gohir.D03G054650 Gossypium hirsutum HOM05D004252 ORTHO05D005101 3.3e-12 79.3 39 84.6
Gohir.D01G110850 Gossypium hirsutum HOM05D004252 ORTHO05D005101 5.6e-12 78.6 34 97.1
Gohir.D04G023525 Gossypium hirsutum HOM05D004252 ORTHO05D005101 5.6e-12 78.6 34 97.1
Gohir.D10G142750 Gossypium hirsutum HOM05D004252 ORTHO05D005101 5.6e-12 78.6 34 97.1
Gohir.D12G169250 Gossypium hirsutum HOM05D004252 ORTHO05D005101 5.6e-12 78.6 34 97.1
Gorai.004G036500 Gossypium raimondii HOM05D004252 ORTHO05D005101 5.6e-12 78.6 34 97.1
Pp3c15_3250 Physcomitrium patens HOM05D004252 ORTHO05D005101 3.4e-09 69.3 188 31.4
PGR031G0210 Punica granatum HOM05D004252 ORTHO05D005101 1.1e-07 64.3 37 83.8
Cre03.g190550 Chlamydomonas reinhardtii HOM05D004252 ORTHO05D005101 2.7e-06 59.7 198 26.8


User provided reference genes

Program Settings