Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0037900 Salix brachista HOM05D003767 ORTHO05D004507 1.1e-153 546.6 272 100.0
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 2.1e-128 462.6 262 88.5
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 2.6e-115 419.1 265 79.2
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 2.7e-88 329.3 271 66.1
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 1.7e-82 310.1 242 67.8
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 1.2e-80 303.9 249 65.1
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 1.6e-80 303.5 266 62.4
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 2.1e-80 303.1 237 68.8
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 6.1e-80 301.6 181 82.9
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 1.8e-79 300.1 272 61.8
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 3.0e-79 299.3 202 74.3
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 6.8e-79 298.1 265 63.4
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 2.0e-78 296.6 179 80.4
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 5.7e-78 295.0 195 75.9
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 5.7e-78 295.0 179 80.4
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 1.3e-77 293.9 283 61.5
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 3.7e-77 292.4 179 79.3
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 1.1e-76 290.8 273 59.0
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.4e-76 289.7 273 59.3
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 2.4e-76 289.7 264 60.2
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 1.2e-75 287.3 201 74.1
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 1.0e-74 284.3 188 75.5
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 1.3e-74 283.9 189 74.1
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 2.2e-74 283.1 269 59.1
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 3.8e-74 282.3 273 59.0
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 5.0e-74 282.0 192 73.4
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 6.5e-74 281.6 189 72.5
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 6.5e-74 281.6 264 60.2
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 1.5e-73 280.4 209 68.9
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 1.9e-73 280.0 201 70.1
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 2.5e-73 279.6 195 70.3
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 4.7e-72 275.4 185 73.0
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 4.7e-72 275.4 263 57.8
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 6.1e-72 275.0 233 61.8
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 8.0e-72 274.6 268 59.0
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 1.4e-71 273.9 188 72.9
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 1.8e-71 273.5 232 61.6
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.8e-71 273.5 264 59.1
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 2.3e-71 273.1 265 60.8
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 5.2e-71 271.9 191 70.7
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 1.2e-70 270.8 171 77.2
Lalb_Chr15g0077061 Lupinus albus HOM05D003767 ORTHO05D004507 1.5e-70 270.4 162 79.0
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 1.5e-70 270.4 183 72.7
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 1.5e-70 270.4 186 71.0
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 2.6e-70 269.6 224 63.8
HanXRQChr14g0446471 Helianthus annuus HOM05D003767 ORTHO05D004507 3.4e-70 269.2 203 67.0
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 3.4e-70 269.2 191 70.2
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 5.7e-70 268.5 198 69.7
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 7.5e-70 268.1 178 72.5
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 1.3e-69 267.3 166 76.5
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 1.3e-69 267.3 283 55.1
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 2.2e-69 266.5 270 57.0
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 6.3e-69 265.0 183 71.6
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 6.3e-69 265.0 184 70.1
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 8.3e-69 264.6 214 64.0
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 1.4e-68 263.8 168 75.6
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 1.8e-68 263.5 178 74.2
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 1.8e-68 263.5 168 75.6
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 2.4e-68 263.1 199 66.8
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 2.4e-68 263.1 177 72.9
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 3.1e-68 262.7 149 87.2
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 3.1e-68 262.7 181 71.8
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 4.1e-68 262.3 250 59.6
HanXRQChr10g0295071 Helianthus annuus HOM05D003767 ORTHO05D004507 9.2e-68 261.2 166 77.1
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 1.2e-67 260.8 230 58.7
ATR0626G021 Amborella trichopoda HOM05D003767 ORTHO05D004507 2.0e-67 260.0 242 57.0
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 2.7e-67 259.6 243 58.4
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 3.5e-67 259.2 170 72.9
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 4.5e-67 258.8 166 74.7
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 5.9e-67 258.5 270 55.6
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 5.9e-67 258.5 270 55.6
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 7.7e-67 258.1 191 67.5
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 7.7e-67 258.1 186 72.6
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 7.7e-67 258.1 149 84.6
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 1.3e-66 257.3 270 54.8
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 1.7e-66 256.9 188 68.6
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 1.7e-66 256.9 184 70.7
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 2.3e-66 256.5 191 65.4
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 2.3e-66 256.5 270 55.2
FAN02G0487 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.3e-66 256.5 272 57.4
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 2.3e-66 256.5 170 72.4
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 2.3e-66 256.5 175 70.9
SGA_v2.0_scaffold499G52492 Striga asiatica HOM05D003767 ORTHO05D004507 2.3e-66 256.5 175 70.9
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 6.6e-66 255.0 187 69.5
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 1.1e-65 254.2 155 81.3
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 1.5e-65 253.8 214 65.4
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 1.9e-65 253.4 225 57.3
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.9e-65 253.4 178 68.5
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 2.5e-65 253.1 225 56.9
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 2.5e-65 253.1 221 58.4
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 3.3e-65 252.7 225 56.9
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 3.3e-65 252.7 160 74.4
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 5.6e-65 251.9 163 76.1
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 7.3e-65 251.5 178 68.0
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 7.3e-65 251.5 225 56.4
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 7.3e-65 251.5 169 72.2
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 7.3e-65 251.5 180 68.3
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 2.8e-64 249.6 170 70.0
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 6.1e-64 248.4 164 71.3
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 8.0e-64 248.1 170 69.4
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 8.0e-64 248.1 170 69.4
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 8.0e-64 248.1 158 75.3
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 1.0e-63 247.7 169 69.8
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 1.4e-63 247.3 163 73.6
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 2.3e-63 246.5 162 74.7
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 2.3e-63 246.5 235 54.5
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 3.0e-63 246.1 169 69.2
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 4.0e-63 245.7 170 69.4
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 5.2e-63 245.4 162 72.8
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 6.8e-63 245.0 162 74.1
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.5e-62 243.8 162 75.3
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 2.0e-62 243.4 161 74.5
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 2.6e-62 243.0 163 71.2
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 4.4e-62 242.3 163 71.8
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 9.8e-62 241.1 178 63.5
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 9.8e-62 241.1 163 72.4
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.3e-61 240.7 163 71.2
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 4.9e-61 238.8 283 49.8
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 6.4e-61 238.4 164 69.5
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 3.5e-59 232.6 154 74.7
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 7.3e-57 224.9 163 65.6
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.6e-56 223.8 150 72.0
SEGI_25900 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 3.6e-56 222.6 159 66.7
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.0e-55 221.1 153 69.3
COL.COLO4_24985 Corchorus olitorius HOM05D003767 ORTHO05D004507 2.3e-55 219.9 137 80.3
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.5e-54 217.2 162 64.2
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 1.1e-47 194.5 185 58.9
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 2.1e-40 170.2 156 54.5
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 5.2e-39 165.6 195 49.7
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 5.2e-39 165.6 156 52.6
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 8.9e-39 164.9 148 56.1
COL.COLO4_10335 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.1e-36 157.9 125 68.8
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 1.1e-36 157.9 156 51.9
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 6.0e-35 152.1 169 48.5
A10p14120 Brassica napus HOM05D000085 ORTHO05D001756 8.6e-34 148.3 94 69.1
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 4.3e-33 146.0 216 43.1
CBR_g15993 Chara braunii HOM05D003767 ORTHO05D004507 8.1e-32 141.7 161 44.7
RcHm_v2.0_Chr2g0172981 Rosa chinensis HOM05D003767 ORTHO05D004507 6.4e-29 132.1 233 40.8
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 8.4e-29 131.7 81 72.8
Zm00001eb126550 Zea mays HOM05D003767 ORTHO05D004507 1.7e-26 124.0 102 64.7
Nn1g08361 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.9e-25 120.6 86 75.6
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 3.3e-25 119.8 85 70.6
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 1.1e-23 114.8 70 84.3
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 3.4e-22 109.8 161 41.6
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 2.2e-21 107.1 155 40.0
Zm00001eb115470 Zea mays HOM05D003767 ORTHO05D004507 2.4e-20 103.6 83 62.7
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 3.2e-20 103.2 109 52.3
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 3.2e-20 103.2 109 52.3
Glyma.03G240651 Glycine max HOM05D003767 ORTHO05D004507 3.2e-20 103.2 93 57.0
A10p03590 Brassica napus HOM05D003767 ORTHO05D004507 1.2e-19 101.3 65 69.2
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 3.5e-19 99.8 63 81.0
VMungo0540G1019 Vigna mungo HOM05D003767 ORTHO05D004507 6.0e-19 99.0 78 55.1
Zm00001eb275300 Zea mays HOM05D003767 ORTHO05D004507 1.3e-18 97.8 80 62.5
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 2.3e-18 97.1 60 83.3
BcaC05g27416 Brassica carinata HOM05D003767 ORTHO05D004507 8.7e-18 95.1 119 47.1
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 4.3e-17 92.8 114 43.9
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 4.8e-16 89.4 53 84.9
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 9.9e-14 81.6 61 68.9
RcHm_v2.0_Chr6g0303351 Rosa chinensis HOM05D003767 ORTHO05D004507 6.0e-11 72.4 48 70.8
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 2.3e-10 70.5 163 30.7
Nn1g08360 Nelumbo nucifera HOM05D003767 ORTHO05D004507 5.6e-09 65.9 69 52.2
BcaC01g04986 Brassica carinata HOM05D002285 ORTHO05D004192 7.4e-09 65.5 44 63.6
C06p44380 Brassica napus HOM05D002285 ORTHO05D004192 5.3e-07 59.3 100 38.0


User provided reference genes

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