Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0032400 Salix brachista HOM05D007200 ORTHO05D009030 6.1e-163 577.4 286 100.0
Manes.08G119500 Manihot esculenta HOM05D007200 ORTHO05D009030 9.8e-121 437.2 288 76.7
TWI12G0470 Tripterygium wilfordii HOM05D007200 ORTHO05D009030 1.8e-119 433.0 290 75.5
Ciclev10002020m.g Citrus clementina HOM05D007200 ORTHO05D009030 1.3e-117 426.8 297 72.4
TAR365G0906 Trochodendron aralioides HOM05D007200 ORTHO05D009030 1.5e-116 423.3 292 72.6
TAR365G0308 Trochodendron aralioides HOM05D007200 ORTHO05D009030 1.9e-116 422.9 292 72.6
Haze_04164 Corylus avellana HOM05D007200 ORTHO05D009030 2.1e-115 419.5 282 74.8
Potri.005G027100 Populus trichocarpa HOM05D007200 ORTHO05D009030 1.8e-114 416.4 222 94.6
QL03p012758 Quercus lobata HOM05D007200 ORTHO05D009030 1.2e-113 413.7 291 72.5
Duzib177G0869 Durio zibethinus HOM05D007200 ORTHO05D009030 3.4e-113 412.1 291 73.2
Gohir.D11G276600 Gossypium hirsutum HOM05D007200 ORTHO05D009030 1.3e-112 410.2 286 72.7
Cfa006611 Carpinus fangiana HOM05D007200 ORTHO05D009030 3.7e-112 408.7 279 72.8
Gohir.A11G266300 Gossypium hirsutum HOM05D007200 ORTHO05D009030 4.9e-112 408.3 286 72.4
Gorai.007G298700 Gossypium raimondii HOM05D007200 ORTHO05D009030 1.9e-111 406.4 286 72.0
GSVIVG01031113001 Vitis vinifera HOM05D007200 ORTHO05D009030 1.9e-111 406.4 273 75.5
Atru.chr12.1493 Acer truncatum HOM05D007200 ORTHO05D009030 2.4e-111 406.0 290 71.7
FvH4_6g06280 Fragaria vesca HOM05D007200 ORTHO05D009030 3.2e-111 405.6 294 72.1
FAN14G1797 Fragaria x ananassa HOM05D007200 ORTHO05D009030 4.1e-111 405.2 294 72.1
RcHm_v2.0_Chr3g0455321 Rosa chinensis HOM05D007200 ORTHO05D009030 1.6e-110 403.3 291 71.8
Thecc.05G310900 Theobroma cacao HOM05D007200 ORTHO05D009030 1.6e-110 403.3 291 71.8
Glyma.10G153100 Glycine max HOM05D007200 ORTHO05D009030 7.8e-110 401.0 268 74.6
FAN09G0829 Fragaria x ananassa HOM05D007200 ORTHO05D009030 3.0e-109 399.1 294 71.1
Nn3g21404 Nelumbo nucifera HOM05D007200 ORTHO05D009030 3.0e-109 399.1 298 67.8
CANSAT54G2021 Cannabis sativa HOM05D007200 ORTHO05D009030 5.6e-108 394.8 294 69.4
MD12G1216700 Malus domestica HOM05D007200 ORTHO05D009030 1.2e-107 393.7 297 69.4
Actinidia24645 Actinidia chinensis HOM05D007200 ORTHO05D009030 1.4e-106 390.2 289 69.6
AUR62000793 Chenopodium quinoa HOM05D007200 ORTHO05D009030 3.1e-106 389.0 285 69.8
Rhsim05G0141700 Rhododendron simsii HOM05D007200 ORTHO05D009030 2.0e-105 386.3 270 74.1
AUR62005175 Chenopodium quinoa HOM05D007200 ORTHO05D009030 2.6e-105 386.0 284 68.7
Lj9C128T5 Lonicera japonica HOM05D007200 ORTHO05D009030 2.6e-105 386.0 264 74.2
VMungo0720G1786 Vigna mungo HOM05D007200 ORTHO05D009030 4.4e-105 385.2 248 76.6
Phvul.007G196200 Phaseolus vulgaris HOM05D007200 ORTHO05D009030 9.8e-105 384.0 268 72.0
Eucgr.B01933 Eucalyptus grandis HOM05D007200 ORTHO05D009030 3.7e-104 382.1 289 67.5
Thhalv10021289m.g Eutrema salsugineum HOM05D007200 ORTHO05D009030 6.4e-104 381.3 279 69.9
CSS0011307 Camellia sinensis var. sinensis HOM05D007200 ORTHO05D009030 8.3e-104 380.9 291 68.0
Lalb_Chr21g0310651 Lupinus albus HOM05D007200 ORTHO05D009030 2.4e-103 379.4 279 67.4
COL.COLO4_10491 Corchorus olitorius HOM05D007200 ORTHO05D009030 9.2e-103 377.5 251 74.5
THA.LOC104818708 Tarenaya hassleriana HOM05D007200 ORTHO05D009030 1.2e-102 377.1 277 69.3
Sp3g04270 Schrenkiella parvula HOM05D007200 ORTHO05D009030 3.5e-102 375.6 261 71.6
Cpa.g.sc48.76 Carica papaya HOM05D007200 ORTHO05D009030 6.0e-102 374.8 289 65.7
DCAR_001939 Daucus carota HOM05D007200 ORTHO05D009030 1.0e-101 374.0 291 64.9
Prupe.6G323000 Prunus persica HOM05D007200 ORTHO05D009030 1.3e-101 373.6 291 67.7
PGR083G0889 Punica granatum HOM05D007200 ORTHO05D009030 1.3e-101 373.6 297 64.6
CiPaw.07G020000 Carya illinoinensis HOM05D007200 ORTHO05D009030 1.7e-101 373.2 271 70.1
CARHR079750 Cardamine hirsuta HOM05D007200 ORTHO05D009030 2.3e-101 372.9 283 66.1
Aqoxy5G00700 Aquilegia oxysepala HOM05D007200 ORTHO05D009030 3.0e-101 372.5 292 65.4
Lj9C124T9 Lonicera japonica HOM05D007200 ORTHO05D009030 3.9e-101 372.1 288 67.7
Aa31LG5G15970 Aethionema arabicum HOM05D007200 ORTHO05D009030 6.6e-101 371.3 278 68.3
BcaC05g30148 Brassica carinata HOM05D007200 ORTHO05D009030 8.6e-101 370.9 284 66.9
Lsat_1_v5_gn_9_87521 Lactuca sativa HOM05D007200 ORTHO05D009030 8.6e-101 370.9 278 68.7
AL3G15960 Arabidopsis lyrata HOM05D007200 ORTHO05D009030 2.5e-100 369.4 265 70.2
Nitab4.5_0002420g0030 Nicotiana tabacum HOM05D007200 ORTHO05D009030 5.6e-100 368.2 289 64.4
BcaC05g30124 Brassica carinata HOM05D007200 ORTHO05D009030 7.3e-100 367.9 284 65.8
Carub.0003s0469 Capsella rubella HOM05D007200 ORTHO05D009030 7.3e-100 367.9 278 67.3
BolC5t34842H Brassica oleracea HOM05D007200 ORTHO05D000438 9.5e-100 367.5 284 66.2
Peaxi162Scf00071g00636 Petunia axillaris HOM05D007200 ORTHO05D009030 1.2e-99 367.1 289 67.1
BraA05t23030Z Brassica rapa HOM05D007200 ORTHO05D009030 1.6e-99 366.7 284 66.2
AT3G05410 Arabidopsis thaliana HOM05D007200 ORTHO05D009030 2.8e-99 365.9 265 69.8
Medtr1g083110 Medicago truncatula HOM05D007200 ORTHO05D009030 1.4e-98 363.6 274 69.0
CsaV3_2G006520 Cucumis sativus L. HOM05D007200 ORTHO05D009030 4.0e-98 362.1 245 73.9
Lj5g0005198 Lotus japonicus HOM05D007200 ORTHO05D009030 2.6e-97 359.4 272 68.0
MELO3C004233.2 Cucumis melo HOM05D007200 ORTHO05D009030 4.4e-97 358.6 271 67.5
Sed0020284 Sechium edule HOM05D007200 ORTHO05D009030 9.9e-97 357.5 246 70.7
HanXRQChr11g0339441 Helianthus annuus HOM05D007200 ORTHO05D009030 2.2e-96 356.3 282 66.0
Psat6g149880 Pisum sativum HOM05D007200 ORTHO05D009030 2.9e-96 355.9 282 66.7
ECA236G3394 Erigeron canadensis HOM05D007200 ORTHO05D009030 1.4e-95 353.6 285 65.6
EL10Ac4g09392 Beta vulgaris HOM05D007200 ORTHO05D009030 4.1e-95 352.1 291 63.2
TPR.G6036 Trifolium pratense HOM05D007200 ORTHO05D009030 5.4e-95 351.7 272 67.3
PGSC0003DMG400007427 Solanum tuberosum HOM05D007200 ORTHO05D009030 7.1e-95 351.3 274 66.1
arahy.Tifrunner.gnm1.ann1.PH9A9F Arachis hypogaea HOM05D007200 ORTHO05D009030 4.6e-94 348.6 251 71.3
FAN02G4393 Fragaria x ananassa HOM05D007200 ORTHO05D009030 6.0e-94 348.2 289 64.7
Migut.N01991 Erythranthe guttata HOM05D007200 ORTHO05D009030 7.8e-94 347.8 286 64.0
Migut.O00553 Erythranthe guttata HOM05D007200 ORTHO05D009030 1.3e-93 347.1 286 64.3
arahy.Tifrunner.gnm1.ann1.H2XQXC Arachis hypogaea HOM05D007200 ORTHO05D009030 3.0e-93 345.9 251 70.9
Nitab4.5_0009303g0010 Nicotiana tabacum HOM05D007200 ORTHO05D009030 3.0e-93 345.9 276 65.2
Solyc11g008480.2 Solanum lycopersicum HOM05D007200 ORTHO05D009030 3.9e-93 345.5 272 64.3
Ah.04g160430 Amaranthus hybridus HOM05D007200 ORTHO05D009030 5.6e-92 341.7 272 65.1
CAN.G321.37 Capsicum annuum HOM05D007200 ORTHO05D009030 7.3e-92 341.3 252 67.1
Sopen11g004260 Solanum pennellii HOM05D007200 ORTHO05D009030 2.8e-91 339.3 248 67.7
Cc02_g31060 Coffea canephora HOM05D007200 ORTHO05D009030 8.1e-91 337.8 278 65.1
MBI19_g12813_MAGBIO Magnolia biondii HOM05D007200 ORTHO05D009030 3.1e-90 335.9 254 68.1
FAN05G3823 Fragaria x ananassa HOM05D000179 ORTHO05D009030 1.2e-89 334.0 225 76.4
MSTRG.27987 Avicennia marina HOM05D007200 ORTHO05D009030 1.5e-89 333.6 274 62.4
PSO210G0998 Papaver somniferum HOM05D007200 ORTHO05D009030 2.0e-89 333.2 288 60.4
vmacro19623 Vaccinium macrocarpon HOM05D007200 ORTHO05D009030 4.4e-89 332.0 270 66.3
ATR0706G032 Amborella trichopoda HOM05D007200 ORTHO05D009030 2.9e-88 329.3 254 62.6
Zm00001eb142170 Zea mays HOM05D007200 ORTHO05D009030 2.9e-88 329.3 250 63.6
SGA_v2.0_scaffold98G29315 Striga asiatica HOM05D007200 ORTHO05D009030 9.3e-87 324.3 268 63.8
BcaC05g30126 Brassica carinata HOM05D007200 ORTHO05D009030 4.6e-86 322.0 284 60.2
PSO832G2855 Papaver somniferum HOM05D007200 ORTHO05D009030 7.8e-86 321.2 288 59.7
ClCG02G015570 Citrullus lanatus HOM05D007200 ORTHO05D009030 8.7e-85 317.8 285 60.0
CANSAT54G2778 Cannabis sativa HOM05D007200 ORTHO05D009030 1.4e-82 310.5 220 70.5
unitig_746.g26859 Utricularia gibba HOM05D004477 ORTHO05D005615 5.3e-82 308.5 275 58.2
CDE02G3507 Ceratophyllum demersum HOM05D007200 ORTHO05D009030 2.9e-80 302.8 293 53.6
HPP92_006928 Vanilla planifolia HOM05D000065 ORTHO05D001606 5.6e-76 288.5 237 60.8
Hund07085 Selenicereus undatus HOM05D007200 ORTHO05D009030 3.5e-62 242.7 185 64.9
Os01g0934400 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 1.0e-61 241.1 179 65.4
AagrBONN_evm.TU.Sc2ySwM_228.2760 Anthoceros agrestis HOM05D007200 ORTHO05D009030 1.4e-58 230.7 238 48.7
Sc16g0008540 Simmondsia chinensis HOM05D007200 ORTHO05D009030 4.5e-57 225.7 190 62.6
Mapoly0092s0016 Marchantia polymorpha HOM05D007200 ORTHO05D009030 1.7e-56 223.8 248 45.6
Pp3c2_22000 Physcomitrium patens HOM05D007200 ORTHO05D009030 5.5e-55 218.8 287 42.2
SMO140G0101 Selaginella moellendorffii HOM05D007200 ORTHO05D009030 5.5e-55 218.8 240 46.7
AUR62004827 Chenopodium quinoa HOM05D007200 ORTHO05D009030 2.3e-53 213.4 178 61.8
SGA_v2.0_scaffold95G28806 Striga asiatica HOM05D007200 ORTHO05D009030 1.1e-47 194.5 147 67.3
CBR_g32304 Chara braunii HOM05D007200 ORTHO05D009030 4.6e-46 189.1 269 39.8
PRCOL_00003141 Prasinoderma coloniale HOM05D007200 ORTHO05D009030 3.4e-41 172.9 251 41.8
Oeu012109.1 Olea europaea HOM05D007200 ORTHO05D009030 6.1e-38 162.2 104 77.9
MCO07G015 Micromonas commoda HOM05D007200 ORTHO05D009030 7.9e-38 161.8 235 37.9
Cre09.g389578 Chlamydomonas reinhardtii HOM05D007200 ORTHO05D009030 1.8e-37 160.6 251 37.8
Actinidia19786 Actinidia chinensis HOM05D007200 ORTHO05D009030 3.3e-28 129.8 107 61.7
C05p61820 Brassica napus HOM05D000205 ORTHO05D000438 3.3e-28 129.8 163 49.1
MD04G1202900 Malus domestica HOM05D007200 ORTHO05D009030 2.2e-24 117.1 120 60.8
Os01g0934350 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 4.1e-18 96.3 71 57.7
AUR62032114 Chenopodium quinoa HOM05D002933 ORTHO05D007742 3.5e-09 66.6 267 25.1
AUR62039657 Chenopodium quinoa HOM05D002933 ORTHO05D007742 5.9e-09 65.9 268 25.4
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 1.0e-08 65.1 278 24.5
CAN.G1228.6 Capsicum annuum HOM05D002933 ORTHO05D007742 6.6e-08 62.4 112 33.9
Hund02566 Selenicereus undatus HOM05D002933 ORTHO05D007742 1.9e-07 60.8 240 24.6
BcaC02g09745 Brassica carinata HOM05D002933 ORTHO05D007742 9.5e-07 58.5 112 32.1
BolC4t25275H Brassica oleracea HOM05D002933 ORTHO05D007742 9.5e-07 58.5 112 32.1
EL10Ac5g11164 Beta vulgaris HOM05D002933 ORTHO05D007742 1.2e-06 58.2 101 28.7
A04p04610 Brassica napus HOM05D002933 ORTHO05D007742 1.6e-06 57.8 112 32.1
BraA04t16171Z Brassica rapa HOM05D002933 ORTHO05D007742 1.6e-06 57.8 112 32.1
Carub.0005s2198 Capsella rubella HOM05D002933 ORTHO05D007742 1.6e-06 57.8 112 31.2
Solyc03g114930.3 Solanum lycopersicum HOM05D002933 ORTHO05D007742 1.6e-06 57.8 101 33.7
Sopen03g034010 Solanum pennellii HOM05D002933 ORTHO05D007742 1.6e-06 57.8 101 33.7
PGSC0003DMG400024531 Solanum tuberosum HOM05D002933 ORTHO05D007742 1.6e-06 57.8 101 32.7
BcaB02g08429 Brassica carinata HOM05D002933 ORTHO05D007742 2.8e-06 57.0 112 31.2
Mapoly0103s0019 Marchantia polymorpha HOM05D007177 ORTHO05D008984 8.0e-06 55.5 208 27.4


User provided reference genes

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