Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 2.8e-146 521.9 266 100.0
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 3.8e-143 511.5 266 98.1
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 5.0e-135 484.6 266 92.5
Potri.013G006500 Populus trichocarpa HOM05D006608 ORTHO05D008316 3.2e-126 455.3 266 86.1
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 5.5e-126 454.5 266 86.5
Manes.08G109600 Manihot esculenta HOM05D006608 ORTHO05D008316 2.7e-112 409.1 270 78.9
Cfa006713 Carpinus fangiana HOM05D006608 ORTHO05D008316 3.0e-108 395.6 275 75.6
Thecc.05G325800 Theobroma cacao HOM05D006608 ORTHO05D008316 4.9e-106 388.3 264 77.3
COL.COLO4_05523 Corchorus olitorius HOM05D006608 ORTHO05D008316 4.1e-105 385.2 263 76.4
Gorai.013G208300 Gossypium raimondii HOM05D006608 ORTHO05D008316 1.2e-104 383.6 265 76.6
Ciclev10002108m.g Citrus clementina HOM05D006608 ORTHO05D008316 2.0e-104 382.9 216 87.5
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 4.5e-104 381.7 265 76.2
PGR031G0497 Punica granatum HOM05D006608 ORTHO05D008316 5.9e-104 381.3 272 74.6
Duzib177G0608 Durio zibethinus HOM05D006608 ORTHO05D008316 7.8e-104 380.9 280 73.2
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 6.6e-103 377.9 303 67.7
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 6.6e-103 377.9 269 72.9
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 8.6e-103 377.5 227 81.9
Prupe.6G309700 Prunus persica HOM05D006608 ORTHO05D008316 3.3e-102 375.6 220 85.5
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 9.5e-102 374.0 239 82.0
THA.LOC104820562 Tarenaya hassleriana HOM05D006608 ORTHO05D008316 1.2e-101 373.6 271 74.2
CSS0011542 Camellia sinensis var. sinensis HOM05D006608 ORTHO05D008316 1.6e-101 373.2 225 83.6
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 2.1e-101 372.9 228 81.1
GSVIVG01031268001 Vitis vinifera HOM05D006608 ORTHO05D008316 3.6e-101 372.1 225 83.1
Eucgr.H01287 Eucalyptus grandis HOM05D006608 ORTHO05D008316 3.0e-100 369.0 217 82.0
Lalb_Chr04g0260371 Lupinus albus HOM05D006608 ORTHO05D008316 5.2e-100 368.2 245 78.0
MD04G1191200 Malus domestica HOM05D006608 ORTHO05D008316 5.2e-100 368.2 248 77.0
HanXRQChr09g0247441 Helianthus annuus HOM05D006608 ORTHO05D008316 8.9e-100 367.5 268 73.1
Phvul.001G224100 Phaseolus vulgaris HOM05D006608 ORTHO05D008316 2.0e-99 366.3 264 74.6
MD12G1203800 Malus domestica HOM05D006608 ORTHO05D008316 3.4e-99 365.5 220 83.2
CsaV3_1G015710 Cucumis sativus L. HOM05D006608 ORTHO05D008316 5.7e-99 364.8 266 73.7
Sed0000881 Sechium edule HOM05D006608 ORTHO05D008316 7.5e-99 364.4 275 71.6
CANSAT54G1874 Cannabis sativa HOM05D006608 ORTHO05D008316 9.8e-99 364.0 219 82.6
ECA240G1520 Erigeron canadensis HOM05D006608 ORTHO05D008316 2.9e-98 362.5 227 80.6
VMungo1383G0735 Vigna mungo HOM05D006608 ORTHO05D008316 1.1e-97 360.5 218 83.5
Lj2g0018741 Lotus japonicus HOM05D006608 ORTHO05D008316 2.4e-97 359.4 216 83.3
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 5.4e-97 358.2 206 85.4
ClCG01G010870 Citrullus lanatus HOM05D006608 ORTHO05D008316 7.0e-97 357.8 274 70.4
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 9.2e-97 357.5 275 69.8
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 1.2e-96 357.1 216 81.9
TAR362G0553 Trochodendron aralioides HOM05D006608 ORTHO05D008316 2.0e-96 356.3 270 68.5
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 2.7e-96 355.9 219 80.8
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 3.5e-96 355.5 267 68.9
Gohir.D13G182950 Gossypium hirsutum HOM05D006608 ORTHO05D008316 4.6e-96 355.1 266 72.2
Lsat_1_v5_gn_7_65241 Lactuca sativa HOM05D006608 ORTHO05D008316 1.0e-95 354.0 263 71.1
MSTRG.16414 Avicennia marina HOM05D006608 ORTHO05D008316 1.3e-95 353.6 228 78.5
Cc02_g35130 Coffea canephora HOM05D006608 ORTHO05D008316 1.3e-95 353.6 271 69.4
Ah.04g158480 Amaranthus hybridus HOM05D006608 ORTHO05D008316 2.3e-95 352.8 273 68.5
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 3.0e-95 352.4 220 80.0
FAN02G2060 Fragaria x ananassa HOM05D006608 ORTHO05D008316 8.6e-95 350.9 219 77.6
FAN14G1365 Fragaria x ananassa HOM05D006608 ORTHO05D008316 8.6e-95 350.9 219 77.6
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 1.5e-94 350.1 238 76.1
RcHm_v2.0_Chr3g0457591 Rosa chinensis HOM05D006608 ORTHO05D008316 1.5e-94 350.1 219 77.6
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 1.9e-94 349.7 238 76.1
DCAR_002111 Daucus carota HOM05D006608 ORTHO05D008316 2.5e-94 349.4 246 71.5
MBI18_g27388_MAGBIO Magnolia biondii HOM05D006608 ORTHO05D008316 2.5e-94 349.4 211 80.6
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 4.3e-94 348.6 229 77.3
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 7.3e-94 347.8 215 79.1
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 9.5e-94 347.4 213 81.2
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 1.6e-93 346.7 221 79.6
EL10Ac4g09502 Beta vulgaris HOM05D006608 ORTHO05D008316 2.1e-93 346.3 248 72.2
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 2.1e-93 346.3 216 80.6
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 2.1e-93 346.3 248 72.2
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 2.1e-93 346.3 216 81.0
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 2.8e-93 345.9 249 71.1
FAN05G5720 Fragaria x ananassa HOM05D006608 ORTHO05D008316 4.7e-93 345.1 219 77.2
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 6.2e-93 344.7 250 71.6
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 6.2e-93 344.7 216 80.6
AUR62006773 Chenopodium quinoa HOM05D006608 ORTHO05D008316 8.0e-93 344.4 241 73.0
Migut.B00927 Erythranthe guttata HOM05D006608 ORTHO05D008316 1.1e-92 344.0 260 68.8
Lj9A306T68 Lonicera japonica HOM05D006608 ORTHO05D008316 1.8e-92 343.2 205 82.4
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 2.3e-92 342.8 277 64.3
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 2.3e-92 342.8 216 80.1
Aqoxy2G02631 Aquilegia oxysepala HOM05D006608 ORTHO05D008316 4.0e-92 342.0 276 65.6
Cpa.g.sc48.186 Carica papaya HOM05D006608 ORTHO05D008316 4.0e-92 342.0 221 80.1
MELO3C026109.2 Cucumis melo HOM05D006608 ORTHO05D008316 5.2e-92 341.7 208 83.2
Rhsim11G0098400 Rhododendron simsii HOM05D006608 ORTHO05D008316 5.2e-92 341.7 299 63.9
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 6.8e-92 341.3 216 79.6
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 1.5e-91 340.1 216 79.2
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 2.0e-91 339.7 248 71.0
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 3.4e-91 339.0 278 64.0
FvH4_6g07900 Fragaria vesca HOM05D006608 ORTHO05D008316 1.9e-89 333.2 208 77.4
CDE01G0267 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 4.1e-89 332.0 215 74.0
C01p27450 Brassica napus HOM05D006608 ORTHO05D008316 2.0e-88 329.7 261 68.2
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 2.7e-88 329.3 282 63.5
A08p11770 Brassica napus HOM05D006608 ORTHO05D008316 6.0e-88 328.2 257 69.6
BraA08t33169Z Brassica rapa HOM05D006608 ORTHO05D008316 6.0e-88 328.2 257 69.6
Thhalv10025982m.g Eutrema salsugineum HOM05D006608 ORTHO05D008316 6.0e-88 328.2 259 70.3
A01p22060 Brassica napus HOM05D006608 ORTHO05D008316 3.0e-87 325.9 253 70.0
BolC1t02685H Brassica oleracea HOM05D006608 ORTHO05D008316 3.9e-87 325.5 272 66.5
CDE12G0684 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 1.9e-86 323.2 207 74.4
BcaC07g37888 Brassica carinata HOM05D006608 ORTHO05D008316 3.3e-86 322.4 257 68.5
BolC8t48283H Brassica oleracea HOM05D006608 ORTHO05D008316 3.3e-86 322.4 257 67.7
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 1.2e-85 320.5 189 81.5
Aa31LG2G11410 Aethionema arabicum HOM05D006608 ORTHO05D008316 2.8e-85 319.3 236 71.6
BcaC09g50245 Brassica carinata HOM05D006608 ORTHO05D008316 3.6e-85 318.9 228 72.8
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 2.3e-84 316.2 213 74.2
Sp7g13760 Schrenkiella parvula HOM05D006608 ORTHO05D008316 3.1e-84 315.8 260 68.5
CARHR222300 Cardamine hirsuta HOM05D006608 ORTHO05D008316 5.2e-84 315.1 218 75.7
AL7G40010 Arabidopsis lyrata HOM05D006608 ORTHO05D008316 6.8e-84 314.7 249 69.5
BcaNung00268 Brassica carinata HOM05D006608 ORTHO05D008316 6.8e-84 314.7 253 69.2
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 5.8e-83 311.6 211 73.9
BcaB04g18298 Brassica carinata HOM05D006608 ORTHO05D008316 1.1e-81 307.4 178 84.3
Carub.0007s2637 Capsella rubella HOM05D006608 ORTHO05D008316 1.1e-81 307.4 261 65.5
AT4G15510 Arabidopsis thaliana HOM05D006608 ORTHO05D008316 2.4e-81 306.2 205 75.1
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 2.5e-78 296.2 219 67.6
BcaC09g50241 Brassica carinata HOM05D006608 ORTHO05D008316 9.5e-78 294.3 252 65.1
SEGI_38534 Sequoiadendron giganteum HOM05D006608 ORTHO05D008316 1.4e-76 290.4 200 69.5
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 6.0e-72 275.0 185 70.8
Oeu019844.1 Olea europaea HOM05D006608 ORTHO05D008316 3.0e-71 272.7 207 69.6
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 1.6e-69 266.9 217 62.2
SMO203G0012 Selaginella moellendorffii HOM05D006608 ORTHO05D008316 1.3e-61 240.7 179 62.6
CBR_g54968 Chara braunii HOM05D006608 ORTHO05D008316 1.1e-57 227.6 190 57.9
Sc09g0002570 Simmondsia chinensis HOM05D006608 ORTHO05D008316 3.7e-53 212.6 135 76.3
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 3.8e-50 202.6 149 67.1
AUR62000427 Chenopodium quinoa HOM05D006608 ORTHO05D008316 3.0e-47 193.0 114 83.3
Cre08.g362900 Chlamydomonas reinhardtii HOM05D006608 ORTHO05D008316 5.6e-46 188.7 219 46.6
MCO08G333 Micromonas commoda HOM05D006608 ORTHO05D008316 1.9e-38 163.7 167 49.1
Glyma.19G227402 Glycine max HOM05D006608 ORTHO05D008316 2.9e-26 123.2 78 80.8
PRCOL_00003409 Prasinoderma coloniale HOM05D006608 ORTHO05D008316 1.6e-24 117.5 187 36.4
Os07g0275901 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.4e-20 104.4 75 72.0
Os07g0275801 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 3.8e-18 96.3 54 83.3
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 4.7e-16 89.4 161 37.3
TAR633G0622 Trochodendron aralioides HOM05D006608 ORTHO05D008316 7.2e-09 65.5 112 39.3
GSVIVG01016616001 Vitis vinifera HOM05D002933 ORTHO05D009221 2.7e-08 63.5 237 24.9
Dinv22762 Davidia involucrata HOM05D002933 ORTHO05D007742 6.1e-08 62.4 182 28.0
Medtr7g023290 Medicago truncatula HOM05D002933 ORTHO05D007742 6.1e-08 62.4 212 25.0
TWI15G0569 Tripterygium wilfordii HOM05D002933 ORTHO05D007742 8.0e-08 62.0 207 26.6
Glyma.18G286500 Glycine max HOM05D002933 ORTHO05D007742 1.0e-07 61.6 196 26.0
VMungo1383G1673 Vigna mungo HOM05D002933 ORTHO05D007742 1.0e-07 61.6 208 26.0
Lalb_Chr10g0091861 Lupinus albus HOM05D002933 ORTHO05D007742 1.8e-07 60.8 182 26.4
Ca_07202_v3 Cicer arietinum L. HOM05D002933 ORTHO05D007742 3.0e-07 60.1 183 25.7
arahy.Tifrunner.gnm1.ann1.55TXVJ Arachis hypogaea HOM05D002933 ORTHO05D007742 4.0e-07 59.7 183 26.2
arahy.Tifrunner.gnm1.ann1.XEQF22 Arachis hypogaea HOM05D002933 ORTHO05D007742 4.0e-07 59.7 183 26.2
SEGI_20505 Sequoiadendron giganteum HOM05D002933 ORTHO05D009221 4.0e-07 59.7 188 29.8
SEGI_36156 Sequoiadendron giganteum HOM05D002933 ORTHO05D007742 5.2e-07 59.3 182 26.4
Eucgr.L03253 Eucalyptus grandis HOM05D002933 ORTHO05D009221 6.7e-07 58.9 230 23.0
Phvul.008G015100 Phaseolus vulgaris HOM05D002933 ORTHO05D007742 8.8e-07 58.5 187 25.1
Oeu011026.1 Olea europaea HOM05D006319 ORTHO05D007963 2.0e-06 57.4 194 24.2
Rhsim03G0127300 Rhododendron simsii HOM05D002933 ORTHO05D009221 2.6e-06 57.0 177 26.0
TPR.G13990 Trifolium pratense HOM05D002933 ORTHO05D009221 2.6e-06 57.0 248 22.6
CsaV3_5G026270 Cucumis sativus L. HOM05D002933 ORTHO05D009221 4.4e-06 56.2 235 23.0
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 4.4e-06 56.2 113 31.0
Lsat_1_v5_gn_2_115981 Lactuca sativa HOM05D002933 ORTHO05D009221 5.7e-06 55.8 252 24.2
MD07G1191200 Malus domestica HOM05D002933 ORTHO05D009221 5.7e-06 55.8 240 21.7
Mapoly0092s0016 Marchantia polymorpha HOM05D007200 ORTHO05D009030 5.7e-06 55.8 209 23.4
VMungo0464G0362 Vigna mungo HOM05D006319 ORTHO05D007963 5.7e-06 55.8 176 24.4
BcaC02g08157 Brassica carinata HOM05D006319 ORTHO05D007963 7.5e-06 55.5 144 29.2
C04p57790 Brassica napus HOM05D006319 ORTHO05D007963 7.5e-06 55.5 144 29.2
Cpa.g.sc1.348 Carica papaya HOM05D002933 ORTHO05D009221 7.5e-06 55.5 252 21.8
Cc02_g33910 Coffea canephora HOM05D006319 ORTHO05D007963 7.5e-06 55.5 244 23.8
ATR0033G007 Amborella trichopoda HOM05D002933 ORTHO05D009221 9.7e-06 55.1 253 24.5


User provided reference genes

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