Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 0.0e+00 2149.0 1106 100.0
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 2011.1 1107 94.4
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1852.8 1111 87.0
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 0.0e+00 1662.1 1138 77.2
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 0.0e+00 1614.7 1149 74.5
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 0.0e+00 1579.7 1148 73.8
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 0.0e+00 1576.6 1118 74.8
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 0.0e+00 1566.6 1148 73.2
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 0.0e+00 1548.5 1134 72.9
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 0.0e+00 1529.2 1157 70.7
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 0.0e+00 1521.1 1141 71.7
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 0.0e+00 1519.2 1145 70.8
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1518.8 1141 71.2
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1517.7 1138 72.0
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 0.0e+00 1517.3 1145 71.7
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1515.7 1123 72.4
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1515.7 1137 70.8
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 0.0e+00 1508.8 1151 70.5
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 0.0e+00 1506.9 1138 70.0
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 0.0e+00 1506.1 1128 71.6
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1505.0 1144 71.2
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 0.0e+00 1501.1 1127 71.0
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 0.0e+00 1495.7 1140 70.4
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1491.5 1137 70.7
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 0.0e+00 1489.9 1138 69.2
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 0.0e+00 1487.6 1144 71.0
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 0.0e+00 1486.1 1135 70.2
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1485.3 1114 70.7
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 0.0e+00 1484.5 1119 70.3
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 0.0e+00 1482.6 1119 70.1
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1477.6 1129 70.6
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 0.0e+00 1470.7 1115 69.4
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1468.8 1138 70.4
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1467.6 1127 69.7
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1462.2 1169 69.3
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1459.5 1128 69.4
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1459.1 1136 69.3
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1456.4 1138 69.0
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 0.0e+00 1453.0 1122 70.2
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1450.3 1144 69.0
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1450.3 1135 68.5
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1448.3 1136 68.7
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1442.2 1140 69.0
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 0.0e+00 1441.0 1154 68.1
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1433.7 1139 68.5
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 0.0e+00 1429.1 1137 67.5
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 0.0e+00 1426.4 1131 68.1
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1424.8 1131 68.1
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 0.0e+00 1422.5 1113 69.0
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 0.0e+00 1419.1 1139 67.5
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 0.0e+00 1402.5 1068 70.6
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 0.0e+00 1395.2 1085 69.1
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 0.0e+00 1387.1 1096 68.9
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 0.0e+00 1384.0 1136 65.3
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 0.0e+00 1383.6 1139 65.8
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1382.9 1139 66.2
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 0.0e+00 1375.1 1091 67.8
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1372.8 1139 65.8
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 0.0e+00 1367.1 1137 66.3
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1366.3 1138 65.8
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1364.7 1094 66.9
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 0.0e+00 1364.0 1189 64.2
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1362.4 1137 64.6
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1360.5 1138 65.1
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1357.4 1146 64.0
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1352.0 1096 66.6
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1349.7 1144 64.8
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1349.3 1109 65.8
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 0.0e+00 1345.9 1087 66.1
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1343.6 1078 67.2
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1341.3 1147 63.9
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 0.0e+00 1333.9 1127 64.8
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1333.5 1078 66.9
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 0.0e+00 1333.5 1120 65.3
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1312.0 1082 65.3
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1309.3 1080 65.3
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1308.9 1078 65.8
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 0.0e+00 1308.9 1076 65.6
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1305.4 1117 63.6
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1304.7 1079 65.2
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1291.2 1123 62.3
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1268.4 1098 61.9
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 0.0e+00 1263.4 1082 63.9
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 0.0e+00 1256.5 1015 68.1
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 0.0e+00 1240.7 1067 63.4
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 0.0e+00 1231.5 1284 56.1
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1226.1 919 70.8
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1223.4 920 70.9
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 0.0e+00 1179.5 1088 58.9
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1172.1 1084 60.8
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 0.0e+00 1165.2 1030 64.0
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 0.0e+00 1157.5 1083 58.8
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 0.0e+00 1157.1 954 66.6
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 0.0e+00 1156.4 936 66.6
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 0.0e+00 1151.7 1102 59.4
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 0.0e+00 1128.2 1350 51.4
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 0.0e+00 1123.2 1078 59.6
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 0.0e+00 1113.6 1058 59.3
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 1.6e-299 1033.1 926 62.3
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 2.3e-295 1019.2 1023 58.4
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 8.9e-287 990.7 855 65.5
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 7.5e-286 987.6 1034 56.2
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 9.3e-244 847.8 795 61.6
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 8.7e-234 814.7 692 63.3
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 1.8e-231 807.0 896 54.9
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 6.9e-231 805.1 1124 42.6
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 2.5e-228 796.6 968 52.3
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 3.6e-227 792.7 1131 41.6
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 1.0e-226 791.2 877 54.8
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 4.3e-225 785.8 775 59.5
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 6.3e-224 781.9 1134 42.1
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 6.9e-223 778.5 1086 42.2
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 1.8e-218 763.8 1100 41.7
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 2.6e-209 733.4 707 59.3
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 2.9e-205 719.9 651 64.1
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 5.7e-201 705.7 987 41.7
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 3.5e-198 696.4 523 68.5
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 1.2e-185 654.8 520 66.3
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 1.8e-178 630.9 428 76.9
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 5.2e-178 629.4 438 75.6
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 4.1e-167 593.2 517 61.5
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 4.3e-140 503.4 503 58.3
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 9.0e-130 469.2 401 64.3
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.7e-120 438.3 343 66.8
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 4.3e-108 397.1 673 41.9
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 1.2e-105 389.0 228 82.9
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 2.0e-105 388.3 381 58.3
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 3.5e-97 360.9 814 32.8
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 9.7e-92 342.8 351 53.3
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 9.1e-90 336.3 190 83.2
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 1.8e-85 322.0 401 50.4
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 5.2e-85 320.5 587 39.5
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 4.5e-81 307.4 1102 25.7
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 7.7e-81 306.6 230 73.0
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 2.4e-66 258.5 198 63.6
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 9.2e-66 256.5 190 70.5
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 1.2e-65 256.1 141 87.9
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 1.7e-64 252.3 1214 22.4
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 5.0e-64 250.8 141 87.9
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.9e-63 248.8 145 83.4
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 6.8e-61 240.4 241 56.0
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 2.7e-57 228.4 256 52.0
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.9e-50 205.7 175 66.9
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.9e-50 205.7 175 66.9
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 2.4e-50 205.3 143 76.2
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 9.2e-50 203.4 118 83.9
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 7.8e-49 200.3 116 82.8
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 3.9e-48 198.0 116 82.8
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 2.5e-47 195.3 547 31.8
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 2.3e-45 188.7 140 72.1
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 3.0e-40 171.8 145 61.4
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 1.6e-38 166.0 143 64.3
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 3.1e-37 161.8 1122 21.7
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 9.9e-36 156.8 191 51.8
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 9.9e-36 156.8 137 64.2
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 1.7e-35 156.0 83 88.0
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 2.9e-35 155.2 82 87.8
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 1.1e-34 153.3 83 85.5
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 5.4e-34 151.0 140 61.4
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 6.0e-33 147.5 147 55.1
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 4.3e-31 141.4 112 67.0
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 4.0e-29 134.8 164 50.6
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 9.0e-29 133.7 110 60.9
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 8.4e-27 127.1 115 58.3
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 1.1e-26 126.7 153 47.7
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 4.2e-26 124.8 134 52.2
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 4.6e-25 121.3 88 76.1
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 3.0e-24 118.6 119 59.7
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 9.0e-21 107.1 85 62.4
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.3e-19 103.2 102 57.8
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 6.4e-19 100.9 87 55.2
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 5.4e-18 97.8 95 55.8
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 2.6e-12 79.0 77 59.7
SHI06177 Sapria himalayana HOM05D004020 ORTHO05D004735 7.1e-10 70.9 49 65.3
SHI06173 Sapria himalayana HOM05D004020 ORTHO05D003975 9.3e-10 70.5 59 64.4
Nitab4.5_0011593g0020 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.6e-09 69.7 43 74.4


User provided reference genes

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