Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0079400 Salix brachista HOM05D005631 ORTHO05D006765 2.9e-38 161.4 81 100.0
Sabra08G0141900 Salix brachista HOM05D000225 ORTHO05D002520 4.3e-29 131.0 69 94.2
Potri.013G152600 Populus trichocarpa HOM05D005631 ORTHO05D006765 9.5e-21 103.2 79 73.4
Sabra13G0122700 Salix brachista HOM05D005631 ORTHO05D006765 9.5e-21 103.2 79 73.4
Sabra06G0125700 Salix brachista HOM05D005631 ORTHO05D006765 1.7e-17 92.4 69 75.4
Sabra16G0264300 Salix brachista HOM05D003748 ORTHO05D004108 6.4e-17 90.5 103 53.4
Sabra15G0037700 Salix brachista HOM05D003748 ORTHO05D004108 1.9e-16 89.0 103 52.4
Sabra15G0067400 Salix brachista HOM05D003748 ORTHO05D004108 5.4e-16 87.4 86 59.3
Manes.02G211700 Manihot esculenta HOM05D005631 ORTHO05D006765 1.6e-15 85.9 80 60.0
Thecc.09G357600 Theobroma cacao HOM05D005631 ORTHO05D006765 3.9e-14 81.3 80 56.2
Sabra16G0085100 Salix brachista HOM05D005274 ORTHO05D007424 5.0e-14 80.9 89 56.2
Hund18954 Selenicereus undatus HOM05D000127 ORTHO05D006765 1.5e-13 79.3 79 55.7
MELO3C025697.2 Cucumis melo HOM05D005631 ORTHO05D006765 4.3e-13 77.8 71 59.2
CANSAT54G1076 Cannabis sativa HOM05D005631 ORTHO05D006765 7.3e-13 77.0 80 55.0
ClCG02G019260 Citrullus lanatus HOM05D005631 ORTHO05D006765 7.3e-13 77.0 71 57.7
Prupe.6G048500 Prunus persica HOM05D005631 ORTHO05D006765 9.5e-13 76.6 80 56.2
CsaV3_6G015890 Cucumis sativus L. HOM05D005631 ORTHO05D006765 1.2e-12 76.3 71 57.7
PGR102G0278 Punica granatum HOM05D005631 ORTHO05D006765 1.6e-12 75.9 79 54.4
SGA_v2.0_scaffold18G08260 Striga asiatica HOM05D005631 ORTHO05D006765 1.6e-12 75.9 80 52.5
Duzib150G1412 Durio zibethinus HOM05D005631 ORTHO05D006765 2.8e-12 75.1 80 53.8
MD03G1056300 Malus domestica HOM05D005631 ORTHO05D006765 2.8e-12 75.1 79 57.0
CSS0000896 Camellia sinensis var. sinensis HOM05D005631 ORTHO05D006765 6.2e-12 73.9 80 51.2
Cfa011776 Carpinus fangiana HOM05D005631 ORTHO05D006765 6.2e-12 73.9 71 57.7
DCAR_004046 Daucus carota HOM05D005631 ORTHO05D006765 6.2e-12 73.9 76 55.3
SGA_v2.0_scaffold20G09058 Striga asiatica HOM05D005631 ORTHO05D006765 1.4e-11 72.8 71 59.2
EL10Ac7g15917 Beta vulgaris HOM05D005631 ORTHO05D006765 2.3e-11 72.0 71 57.7
FvH4_3g39740 Fragaria vesca HOM05D005631 ORTHO05D006765 2.3e-11 72.0 79 54.4
FAN11G1428 Fragaria x ananassa HOM05D005631 ORTHO05D006765 2.3e-11 72.0 79 54.4
FAN16G0042 Fragaria x ananassa HOM05D005631 ORTHO05D006765 2.3e-11 72.0 79 54.4
Hma1.2p1_1586F.1_g292190 Hydrangea macrophylla HOM05D005631 ORTHO05D006765 2.3e-11 72.0 71 56.3
Oeu059694.1 Olea europaea HOM05D005631 ORTHO05D006765 2.3e-11 72.0 80 51.2
RcHm_v2.0_Chr5g0071621 Rosa chinensis HOM05D005631 ORTHO05D006765 2.3e-11 72.0 79 54.4
Sabra10G0082900 Salix brachista HOM05D005631 ORTHO05D006765 2.3e-11 72.0 60 68.3
QL01p026260 Quercus lobata HOM05D005631 ORTHO05D006765 3.1e-11 71.6 79 50.6
SalBow1G1570 Salvia bowleyana HOM05D005631 ORTHO05D006765 3.1e-11 71.6 80 51.2
Gohir.A03G025600 Gossypium hirsutum HOM05D005631 ORTHO05D006765 4.0e-11 71.2 80 51.2
Gohir.D03G142900 Gossypium hirsutum HOM05D005631 ORTHO05D006765 4.0e-11 71.2 80 51.2
Gorai.003G150100 Gossypium raimondii HOM05D005631 ORTHO05D006765 4.0e-11 71.2 80 51.2
Sabra16G0093500 Salix brachista HOM05D005274 ORTHO05D007424 5.2e-11 70.9 60 66.7
CiPaw.13G069500 Carya illinoinensis HOM05D005631 ORTHO05D006765 6.8e-11 70.5 71 53.5
Oeu008095.1 Olea europaea HOM05D005631 ORTHO05D006765 6.8e-11 70.5 71 56.3
Cpa.g.sc2.358 Carica papaya HOM05D005631 ORTHO05D006765 1.2e-10 69.7 71 56.3
FAN21G1424 Fragaria x ananassa HOM05D005631 ORTHO05D006765 1.2e-10 69.7 79 53.2
Sabra06G0178600 Salix brachista HOM05D005631 ORTHO05D006765 1.2e-10 69.7 54 70.4
Lsat_1_v5_gn_6_47101 Lactuca sativa HOM05D005631 ORTHO05D006765 2.0e-10 68.9 69 55.1
MD11G1057500 Malus domestica HOM05D005631 ORTHO05D006765 2.0e-10 68.9 79 54.4
Actinidia23857 Actinidia chinensis HOM05D005631 ORTHO05D006765 3.4e-10 68.2 71 54.9
Sed0015217 Sechium edule HOM05D005631 ORTHO05D006765 4.4e-10 67.8 71 52.1
Migut.H00695 Erythranthe guttata HOM05D005631 ORTHO05D006765 1.3e-09 66.2 79 46.8
FAN25G2299 Fragaria x ananassa HOM05D005631 ORTHO05D006765 1.3e-09 66.2 77 53.2
MSTRG.2645 Avicennia marina HOM05D005631 ORTHO05D006765 2.2e-09 65.5 80 46.2
Ca_15008_v3 Cicer arietinum L. HOM05D005631 ORTHO05D006765 2.2e-09 65.5 80 51.2
Ca_15010_v3 Cicer arietinum L. HOM05D005631 ORTHO05D006765 2.2e-09 65.5 80 51.2
Lalb_Chr15g0083281 Lupinus albus HOM05D005631 ORTHO05D006765 2.2e-09 65.5 80 51.2
Sabra07G0113400 Salix brachista HOM05D005274 ORTHO05D006485 2.2e-09 65.5 36 86.1
Nn1g05206 Nelumbo nucifera HOM05D005631 ORTHO05D006765 2.9e-09 65.1 70 54.3
Actinidia34479 Actinidia chinensis HOM05D005631 ORTHO05D006765 4.9e-09 64.3 71 52.1
Solyc03g033480.4 Solanum lycopersicum HOM05D005631 ORTHO05D006765 6.4e-09 63.9 78 51.3
Sopen03g006230 Solanum pennellii HOM05D005631 ORTHO05D006765 6.4e-09 63.9 78 51.3
AUR62009671 Chenopodium quinoa HOM05D005631 ORTHO05D006765 8.3e-09 63.5 79 49.4
Nitab4.5_0003548g0030 Nicotiana tabacum HOM05D005631 ORTHO05D006765 8.3e-09 63.5 78 50.0
AUR62001872 Chenopodium quinoa HOM05D005631 ORTHO05D006765 1.1e-08 63.2 77 49.4
PGSC0003DMG400022531 Solanum tuberosum HOM05D005631 ORTHO05D006765 1.1e-08 63.2 78 51.3
GSVIVG01033331001 Vitis vinifera HOM05D005631 ORTHO05D006765 1.1e-08 63.2 77 48.1
Glyma.18G057300 Glycine max HOM05D005631 ORTHO05D006765 1.9e-08 62.4 80 51.2
Atru.chr3.4122 Acer truncatum HOM05D005631 ORTHO05D006765 4.1e-08 61.2 73 54.8
Phvul.006G073900 Phaseolus vulgaris HOM05D005631 ORTHO05D006765 4.1e-08 61.2 80 50.0
Glyma.11G164100 Glycine max HOM05D005631 ORTHO05D006765 5.4e-08 60.8 80 51.2
HanXRQChr10g0284941 Helianthus annuus HOM05D005631 ORTHO05D006765 7.1e-08 60.5 69 53.6
Medtr3g465690 Medicago truncatula HOM05D005631 ORTHO05D006765 9.2e-08 60.1 72 54.2
CDE09G1253 Ceratophyllum demersum HOM05D001009 ORTHO05D000829 1.2e-07 59.7 79 49.4
AL7G45820 Arabidopsis lyrata HOM05D005631 ORTHO05D006765 1.6e-07 59.3 71 52.1
CAN.G354.39 Capsicum annuum HOM05D005631 ORTHO05D006765 1.6e-07 59.3 79 50.6
MBI18_g07568_MAGBIO Magnolia biondii HOM05D005631 ORTHO05D006765 1.6e-07 59.3 71 47.9
Carub.0007s3232 Capsella rubella HOM05D005631 ORTHO05D006765 2.7e-07 58.5 80 47.5
Sabra07G0096200 Salix brachista HOM05D005274 ORTHO05D006765 2.7e-07 58.5 50 66.0
PSO349G0142 Papaver somniferum HOM05D005631 ORTHO05D006765 3.5e-07 58.2 71 54.9
HPP92_019076 Vanilla planifolia HOM05D005631 ORTHO05D006765 3.5e-07 58.2 79 44.3
TPR.G25706 Trifolium pratense HOM05D005631 ORTHO05D006765 4.6e-07 57.8 72 51.4
ATR0304G021 Amborella trichopoda HOM05D005631 ORTHO05D006765 6.0e-07 57.4 79 43.0
AT5G37055 Arabidopsis thaliana HOM05D005631 ORTHO05D006765 6.0e-07 57.4 71 49.3
Sabra16G0029400 Salix brachista HOM05D005631 ORTHO05D006765 6.0e-07 57.4 49 65.3
Eucgr.B04002 Eucalyptus grandis HOM05D005631 ORTHO05D006765 1.0e-06 56.6 63 52.4
Rhsim01G0240900 Rhododendron simsii HOM05D005631 ORTHO05D006765 1.0e-06 56.6 73 49.3
THA.LOC104810692 Tarenaya hassleriana HOM05D005631 ORTHO05D006765 1.0e-06 56.6 71 49.3
A03p12230 Brassica napus HOM05D005631 ORTHO05D006765 1.3e-06 56.2 71 49.3
C03p14340 Brassica napus HOM05D005631 ORTHO05D006765 1.3e-06 56.2 71 49.3
C09p50330 Brassica napus HOM05D005631 ORTHO05D006765 1.3e-06 56.2 71 49.3
BolC3t13878H Brassica oleracea HOM05D005631 ORTHO05D006765 1.3e-06 56.2 71 49.3
BraA03t10534Z Brassica rapa HOM05D005631 ORTHO05D006765 1.3e-06 56.2 71 49.3
BraA10t43643Z Brassica rapa HOM05D005631 ORTHO05D006765 1.3e-06 56.2 71 49.3
Ciclev10029319m.g Citrus clementina HOM05D005631 ORTHO05D006765 1.3e-06 56.2 70 55.7
Sabra19G0122200 Salix brachista HOM05D005631 ORTHO05D006765 1.3e-06 56.2 50 64.0
arahy.Tifrunner.gnm1.ann1.7E53FC Arachis hypogaea HOM05D005631 ORTHO05D006765 2.3e-06 55.5 74 51.4
TAR633G1157 Trochodendron aralioides HOM05D005631 ORTHO05D006765 2.3e-06 55.5 63 49.2
BcaC04g19866 Brassica carinata HOM05D005631 ORTHO05D006765 3.9e-06 54.7 71 47.9
A10p15820 Brassica napus HOM05D005631 ORTHO05D006765 3.9e-06 54.7 71 47.9
BolC9t57889H Brassica oleracea HOM05D005631 ORTHO05D006765 3.9e-06 54.7 71 47.9
vmacro14621 Vaccinium macrocarpon HOM05D005631 ORTHO05D006765 3.9e-06 54.7 83 44.6
BcaB01g04521 Brassica carinata HOM05D005631 ORTHO05D006765 5.1e-06 54.3 71 47.9
Cc07_g10850 Coffea canephora HOM05D005631 ORTHO05D006765 5.1e-06 54.3 62 51.6
Sc21g0005270 Simmondsia chinensis HOM05D005631 ORTHO05D006765 5.1e-06 54.3 62 54.8
Thhalv10014837m.g Eutrema salsugineum HOM05D005631 ORTHO05D006765 6.6e-06 53.9 80 45.0


User provided reference genes

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