Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 2.1e-310 1068.1 530 100.0
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 2.3e-272 941.8 530 89.8
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 4.6e-265 917.5 530 87.0
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 4.9e-251 870.9 526 81.9
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 1.6e-249 865.9 524 82.6
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 1.6e-249 865.9 525 82.1
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 4.6e-249 864.4 526 81.9
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 6.0e-249 864.0 526 81.7
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 7.9e-249 863.6 526 81.0
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 3.9e-248 861.3 527 81.2
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 1.9e-247 859.0 518 81.9
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 2.5e-247 858.6 527 80.8
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 2.5e-247 858.6 525 81.1
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 4.3e-247 857.8 526 81.0
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 4.3e-247 857.8 526 80.4
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 7.4e-247 857.1 530 80.0
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 2.1e-246 855.5 530 80.0
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 3.6e-246 854.7 525 80.8
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 3.6e-246 854.7 525 80.8
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 4.0e-245 851.3 530 79.6
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 9.9e-244 846.7 527 79.1
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 9.9e-244 846.7 526 80.2
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 6.4e-243 844.0 527 79.5
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 8.4e-243 843.6 530 79.2
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 3.2e-242 841.6 524 79.4
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 4.2e-242 841.3 532 79.5
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 7.1e-242 840.5 526 79.1
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 9.3e-242 840.1 530 78.7
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 1.2e-241 839.7 526 78.9
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 4.6e-241 837.8 530 77.0
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 3.0e-240 835.1 546 76.7
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.5e-239 832.8 528 78.0
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 5.6e-239 830.9 527 79.1
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 5.6e-239 830.9 526 78.9
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 7.4e-239 830.5 530 77.9
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 9.6e-239 830.1 532 78.4
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 1.3e-238 829.7 526 78.9
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 1.6e-238 829.3 527 78.4
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 2.1e-238 828.9 528 77.7
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 2.8e-238 828.6 530 77.2
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 3.7e-238 828.2 528 78.0
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 4.8e-238 827.8 524 78.2
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 4.8e-238 827.8 532 78.0
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.1e-237 826.6 526 78.3
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 1.4e-237 826.2 530 77.0
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 2.4e-237 825.5 530 76.4
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 3.1e-237 825.1 524 79.2
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 2.0e-236 822.4 530 76.4
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 2.6e-236 822.0 530 77.0
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 3.4e-236 821.6 527 77.6
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 3.4e-236 821.6 530 77.7
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 1.7e-235 819.3 529 78.1
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.2e-235 818.9 526 77.6
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 2.2e-235 818.9 529 77.7
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 4.9e-235 817.8 527 76.3
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.1e-234 816.6 526 77.9
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 1.1e-234 816.6 532 76.1
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 1.9e-234 815.8 525 77.9
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 1.9e-234 815.8 522 78.0
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 1.9e-234 815.8 526 78.1
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 2.5e-234 815.5 527 76.9
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 4.2e-234 814.7 529 77.1
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 4.2e-234 814.7 525 78.5
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 7.1e-234 813.9 529 76.9
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 7.1e-234 813.9 530 76.4
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 1.2e-233 813.1 527 76.9
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 2.7e-233 812.0 530 76.2
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 2.7e-233 812.0 528 75.9
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 3.5e-233 811.6 527 76.7
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 1.3e-232 809.7 524 76.3
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 1.8e-232 809.3 528 76.3
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 1.8e-232 809.3 514 77.6
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 2.3e-232 808.9 527 76.1
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 2.3e-232 808.9 527 75.9
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 2.3e-232 808.9 545 74.7
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 3.0e-232 808.5 524 77.3
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 5.1e-232 807.7 524 76.5
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 5.1e-232 807.7 528 76.5
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 6.7e-232 807.4 532 75.4
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 6.7e-232 807.4 528 75.9
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 6.7e-232 807.4 521 77.4
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 8.7e-232 807.0 529 75.4
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 1.9e-231 805.8 531 76.5
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 3.3e-231 805.1 524 76.9
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 5.7e-231 804.3 529 75.8
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 9.6e-231 803.5 522 76.1
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.3e-230 803.1 524 76.3
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 2.1e-230 802.4 532 75.2
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 1.4e-229 799.7 527 74.4
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.8e-229 799.3 527 75.1
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 2.4e-229 798.9 512 77.7
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 2.4e-229 798.9 530 75.5
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 3.1e-229 798.5 524 76.0
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 4.1e-229 798.1 528 75.8
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 1.2e-228 796.6 527 75.3
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 1.7e-227 792.7 527 74.0
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 3.8e-227 791.6 528 75.2
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 5.5e-226 787.7 530 74.2
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.8e-221 772.7 519 74.8
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 2.6e-220 768.8 521 74.5
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 3.4e-220 768.5 519 73.8
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 3.9e-216 755.0 469 80.0
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 1.5e-215 753.1 483 77.0
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 2.2e-214 749.2 523 71.5
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 8.2e-214 747.3 526 71.5
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 3.4e-212 741.9 478 78.0
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 1.0e-208 730.3 475 75.8
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 5.2e-208 728.0 479 76.2
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 2.6e-207 725.7 526 69.6
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 2.3e-200 702.6 478 75.1
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 1.5e-199 699.9 522 66.9
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 2.6e-199 699.1 522 66.9
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 2.2e-198 696.0 474 74.7
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 1.6e-193 679.9 520 66.9
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 6.8e-192 674.5 417 81.1
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.0e-191 672.9 525 67.0
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.3e-182 643.7 504 67.1
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 6.3e-182 641.3 440 72.3
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 5.4e-181 638.3 523 65.2
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 2.9e-179 632.5 414 76.6
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 7.0e-173 611.3 416 75.5
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 3.5e-172 609.0 530 62.8
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.3e-171 606.3 420 73.6
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 3.3e-170 602.4 540 58.5
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 1.3e-163 580.5 421 71.5
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 6.4e-158 561.6 382 74.3
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 1.9e-157 560.1 496 62.1
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 9.3e-141 504.6 563 48.5
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 9.6e-138 494.6 267 89.9
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 8.4e-118 428.3 245 84.5
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 4.8e-113 412.5 493 47.7
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 1.8e-112 410.6 240 82.5
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 3.1e-104 383.3 238 76.9
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 3.4e-103 379.8 515 45.6
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 1.9e-101 374.0 287 65.9
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 5.5e-101 372.5 335 59.7
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.6e-100 370.9 262 72.5
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 8.8e-99 365.2 303 67.0
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 2.0e-95 354.0 468 45.5
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 2.4e-88 330.5 270 64.1
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 2.0e-87 327.4 270 63.3
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.5e-86 322.4 347 54.5
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 2.7e-79 300.4 249 65.9
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 5.0e-62 243.0 160 75.0
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 3.2e-56 223.8 259 50.6
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 1.3e-54 218.4 150 68.7
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 6.0e-47 193.0 99 91.9
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 1.7e-46 191.4 103 87.4
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 2.3e-46 191.0 333 40.8
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 5.6e-45 186.4 151 67.5
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.2e-44 185.3 147 64.6
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 4.0e-43 180.3 104 84.6
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 3.2e-40 170.6 121 68.6
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 9.2e-32 142.5 175 46.9
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 9.2e-32 142.5 75 89.3
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 1.6e-31 141.7 161 50.9
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 4.7e-28 130.2 79 78.5
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 2.4e-27 127.9 85 74.1
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 7.6e-18 96.3 76 67.1
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 8.4e-17 92.8 93 53.8
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 7.4e-13 79.7 61 68.9
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 2.6e-10 71.2 51 68.6
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 9.9e-10 69.3 50 66.0
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 3.8e-09 67.4 35 82.9
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 1.2e-07 62.4 30 86.7
MELO3C034926.2 Cucumis melo HOM05D002267 ORTHO05D001928 6.0e-07 60.1 38 78.9


User provided reference genes

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