Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0161800 Salix brachista HOM05D006328 ORTHO05D007721 2.7e-155 552.0 278 100.0
Potri.003G216700 Populus trichocarpa HOM05D006328 ORTHO05D007721 2.0e-126 456.1 279 85.7
Manes.03G088400 Manihot esculenta HOM05D006328 ORTHO05D007721 3.6e-96 355.5 280 68.9
CiPaw.13G173100 Carya illinoinensis HOM05D006328 ORTHO05D007721 1.9e-92 343.2 283 67.1
Atru.chr3.2259 Acer truncatum HOM05D006328 ORTHO05D007721 1.2e-91 340.5 278 67.3
Atru.chr3.2265 Acer truncatum HOM05D006328 ORTHO05D007721 1.2e-91 340.5 278 67.3
Prupe.1G537200 Prunus persica HOM05D006328 ORTHO05D007721 2.1e-91 339.7 283 65.7
Haze_22985 Corylus avellana HOM05D006328 ORTHO05D007721 1.0e-90 337.4 310 61.6
Thecc.09G213100 Theobroma cacao HOM05D006328 ORTHO05D007721 1.0e-90 337.4 282 67.4
Ciclev10016391m.g Citrus clementina HOM05D006328 ORTHO05D007721 5.1e-90 335.1 276 65.2
PGR102G1639 Punica granatum HOM05D006328 ORTHO05D007721 1.1e-89 334.0 271 66.8
Cpa.g.sc119.81 Carica papaya HOM05D006328 ORTHO05D007721 1.9e-89 333.2 285 64.2
ClCG08G005770 Citrullus lanatus HOM05D006328 ORTHO05D007721 1.9e-89 333.2 286 64.0
FAN16G1952 Fragaria x ananassa HOM05D006328 ORTHO05D007721 5.6e-89 331.6 284 65.1
QL01p007982 Quercus lobata HOM05D006328 ORTHO05D007721 2.1e-88 329.7 281 65.8
TAR633G0950 Trochodendron aralioides HOM05D006328 ORTHO05D007721 2.1e-88 329.7 280 63.9
ClCG03G013990 Citrullus lanatus HOM05D006328 ORTHO05D007721 3.7e-88 328.9 286 63.6
FAN25G2838 Fragaria x ananassa HOM05D006328 ORTHO05D007721 8.1e-88 327.8 284 64.8
TAR633G1956 Trochodendron aralioides HOM05D006328 ORTHO05D007721 8.1e-88 327.8 280 63.6
FvH4_3g44830 Fragaria vesca HOM05D006328 ORTHO05D007721 2.4e-87 326.2 282 64.2
FAN11G1794 Fragaria x ananassa HOM05D006328 ORTHO05D007721 5.3e-87 325.1 282 63.8
MELO3C015648.2 Cucumis melo HOM05D006328 ORTHO05D007721 9.0e-87 324.3 286 62.6
Manes.15G105600 Manihot esculenta HOM05D006328 ORTHO05D007721 2.6e-86 322.8 280 65.4
RcHm_v2.0_Chr5g0081531 Rosa chinensis HOM05D006328 ORTHO05D007721 3.4e-86 322.4 284 64.8
CsaV3_1G042230 Cucumis sativus L. HOM05D006328 ORTHO05D007721 5.8e-86 321.6 286 62.6
Eucgr.B03625 Eucalyptus grandis HOM05D006328 ORTHO05D007721 7.6e-86 321.2 279 63.8
TWI60G0846 Tripterygium wilfordii HOM05D006328 ORTHO05D007721 7.6e-86 321.2 278 62.9
THA.LOC104811061 Tarenaya hassleriana HOM05D006328 ORTHO05D007721 1.3e-85 320.5 282 63.1
Gohir.D13G217500 Gossypium hirsutum HOM05D006328 ORTHO05D007721 2.9e-85 319.3 279 62.4
CARHR153570 Cardamine hirsuta HOM05D006328 ORTHO05D007721 3.8e-85 318.9 281 61.6
Gorai.013G248000 Gossypium raimondii HOM05D006328 ORTHO05D007721 3.8e-85 318.9 279 62.4
Nn7g35935 Nelumbo nucifera HOM05D006328 ORTHO05D007721 3.8e-85 318.9 279 63.1
Gohir.A13G213700 Gossypium hirsutum HOM05D006328 ORTHO05D007721 1.1e-84 317.4 279 62.0
Dinv13426 Davidia involucrata HOM05D006328 ORTHO05D007721 1.4e-84 317.0 259 66.8
MD08G1205200 Malus domestica HOM05D006328 ORTHO05D007721 1.9e-84 316.6 285 63.2
CANSAT11G2432 Cannabis sativa HOM05D006328 ORTHO05D007721 2.5e-84 316.2 296 59.8
FAN21G0799 Fragaria x ananassa HOM05D006328 ORTHO05D007721 2.5e-84 316.2 294 62.2
Sed0015335 Sechium edule HOM05D006328 ORTHO05D007721 4.2e-84 315.5 287 61.3
COL.COLO4_34990 Corchorus olitorius HOM05D001240 ORTHO05D002450 7.1e-84 314.7 210 76.2
EL10Ac4g10350 Beta vulgaris HOM05D006328 ORTHO05D007721 9.3e-84 314.3 294 59.2
Lalb_Chr10g0091951 Lupinus albus HOM05D006328 ORTHO05D007721 7.9e-83 311.2 280 62.9
Actinidia16265 Actinidia chinensis HOM05D006328 ORTHO05D007721 1.5e-81 307.0 282 59.9
Hund07572 Selenicereus undatus HOM05D006328 ORTHO05D007721 1.9e-81 306.6 285 61.4
PGSC0003DMG400032183 Solanum tuberosum HOM05D006328 ORTHO05D007721 2.5e-81 306.2 275 61.1
A06p39560 Brassica napus HOM05D006328 ORTHO05D007721 7.4e-81 304.7 279 59.9
BraA06t26871Z Brassica rapa HOM05D006328 ORTHO05D007721 7.4e-81 304.7 279 59.9
Lj6g0000665 Lotus japonicus HOM05D006328 ORTHO05D007721 9.6e-81 304.3 278 62.6
Sp2g18300 Schrenkiella parvula HOM05D006328 ORTHO05D007721 9.6e-81 304.3 279 60.2
Aa31LG4G12590 Aethionema arabicum HOM05D006328 ORTHO05D007721 1.3e-80 303.9 280 60.0
Sopen01g002030 Solanum pennellii HOM05D006328 ORTHO05D007721 1.3e-80 303.9 274 59.9
GSVIVG01025405001 Vitis vinifera HOM05D006328 ORTHO05D007721 1.6e-80 303.5 256 64.8
AUR62019196 Chenopodium quinoa HOM05D006328 ORTHO05D007721 2.1e-80 303.1 281 58.7
C07p38710 Brassica napus HOM05D006328 ORTHO05D007721 4.8e-80 302.0 279 59.1
BcaB04g19533 Brassica carinata HOM05D006328 ORTHO05D007721 6.2e-80 301.6 280 60.7
BcaC04g23807 Brassica carinata HOM05D006328 ORTHO05D007721 6.2e-80 301.6 279 60.6
C09p04470 Brassica napus HOM05D006328 ORTHO05D007721 6.2e-80 301.6 279 60.6
BolC9t53377H Brassica oleracea HOM05D006328 ORTHO05D007721 6.2e-80 301.6 279 60.6
Glyma.08G315600 Glycine max HOM05D006328 ORTHO05D007721 6.2e-80 301.6 286 60.1
Nitab4.5_0011368g0030 Nicotiana tabacum HOM05D006328 ORTHO05D007721 6.2e-80 301.6 276 59.1
CAN.G158.4 Capsicum annuum HOM05D006328 ORTHO05D007721 8.2e-80 301.2 285 58.2
Nitab4.5_0000775g0140 Nicotiana tabacum HOM05D006328 ORTHO05D007721 8.2e-80 301.2 274 59.9
AL5G20530 Arabidopsis lyrata HOM05D006328 ORTHO05D007721 1.4e-79 300.4 283 59.4
arahy.Tifrunner.gnm1.ann1.6HD85A Arachis hypogaea HOM05D006328 ORTHO05D007721 1.4e-79 300.4 282 61.7
Solyc01g006020.4 Solanum lycopersicum HOM05D006328 ORTHO05D007721 1.4e-79 300.4 274 58.8
BraA09t36060Z Brassica rapa HOM05D006328 ORTHO05D007721 6.9e-79 298.1 282 59.6
A09p04230 Brassica napus HOM05D006328 ORTHO05D007721 9.0e-79 297.7 281 60.1
Thhalv10004835m.g Eutrema salsugineum HOM05D006328 ORTHO05D007721 1.2e-78 297.4 280 60.4
Duzib150G1371 Durio zibethinus HOM05D006328 ORTHO05D007721 1.5e-78 297.0 280 60.0
Glyma.18G097300 Glycine max HOM05D006328 ORTHO05D007721 2.6e-78 296.2 268 62.7
Lj1A460T3 Lonicera japonica HOM05D006328 ORTHO05D007721 5.8e-78 295.0 263 62.4
MBI13_g29633_MAGBIO Magnolia biondii HOM05D006328 ORTHO05D007721 7.6e-78 294.7 210 70.5
Hma1.2p1_0062F.1_g034170 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 1.3e-77 293.9 210 71.4
Phvul.006G042800 Phaseolus vulgaris HOM05D006328 ORTHO05D007721 1.3e-77 293.9 215 70.7
AT3G32930 Arabidopsis thaliana HOM05D006328 ORTHO05D007721 2.2e-77 293.1 282 59.6
Peaxi162Scf00100g00716 Petunia axillaris HOM05D006328 ORTHO05D007721 2.2e-77 293.1 265 60.4
CSS0031266 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 6.5e-77 291.6 282 59.2
ECA238G4721 Erigeron canadensis HOM05D006328 ORTHO05D007721 1.9e-76 290.0 265 58.9
Lsat_1_v5_gn_2_101560 Lactuca sativa HOM05D006328 ORTHO05D007721 4.2e-76 288.9 266 58.6
Ah.06g193050 Amaranthus hybridus HOM05D001193 ORTHO05D007721 9.3e-76 287.7 251 59.4
Carub.0003s3500 Capsella rubella HOM05D006328 ORTHO05D007721 9.3e-76 287.7 238 64.7
HanXRQChr07g0196761 Helianthus annuus HOM05D006328 ORTHO05D007721 9.3e-76 287.7 261 59.8
Medtr3g083310 Medicago truncatula HOM05D006328 ORTHO05D007721 9.3e-76 287.7 279 57.3
ATR0598G038 Amborella trichopoda HOM05D006328 ORTHO05D007721 2.1e-75 286.6 260 59.6
Cc01_g01550 Coffea canephora HOM05D006328 ORTHO05D007721 2.7e-75 286.2 290 55.9
Oeu029372.1 Olea europaea HOM05D006328 ORTHO05D007721 7.9e-75 284.6 275 57.5
TPR.G19330 Trifolium pratense HOM05D006328 ORTHO05D007721 1.0e-74 284.3 262 60.3
Rhsim13G0229700 Rhododendron simsii HOM05D006328 ORTHO05D007721 3.0e-74 282.7 302 56.3
MSTRG.18860 Avicennia marina HOM05D006328 ORTHO05D007721 5.1e-74 282.0 277 58.8
DCAR_001992 Daucus carota HOM05D006328 ORTHO05D007721 1.5e-73 280.4 256 60.5
Migut.D02532 Erythranthe guttata HOM05D006328 ORTHO05D007721 2.5e-73 279.6 270 56.7
HPP92_009650 Vanilla planifolia HOM05D006328 ORTHO05D007721 2.5e-73 279.6 210 67.6
SalBow6G6014 Salvia bowleyana HOM05D006328 ORTHO05D007721 3.3e-73 279.3 216 67.1
PSO339G5084 Papaver somniferum HOM05D006328 ORTHO05D007721 4.3e-73 278.9 279 55.9
Aqoxy1G00065 Aquilegia oxysepala HOM05D006328 ORTHO05D007721 1.3e-72 277.3 281 55.9
PSO384G1580 Papaver somniferum HOM05D006328 ORTHO05D007721 6.3e-72 275.0 279 55.9
SGA_v2.0_scaffold6G03437 Striga asiatica HOM05D006328 ORTHO05D007721 1.4e-71 273.9 229 63.8
AUR62000025 Chenopodium quinoa HOM05D006328 ORTHO05D007721 5.3e-71 271.9 195 70.8
CDE06G2606 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 1.5e-70 270.4 280 53.9
Actinidia06854 Actinidia chinensis HOM05D001240 ORTHO05D002450 2.6e-70 269.6 236 64.0
unitig_746.g26630 Utricularia gibba HOM05D006328 ORTHO05D007721 5.9e-70 268.5 214 66.4
vmacro04215 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 6.9e-63 245.0 198 67.2
Os07g0608100 Oryza sativa ssp. japonica HOM05D006328 ORTHO05D007721 7.7e-62 241.5 218 61.0
Hma1.2p1_0062F.1_g034180 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 1.1e-60 237.7 161 72.7
Zm00001eb108920 Zea mays HOM05D006328 ORTHO05D007721 5.5e-60 235.3 217 60.4
VMungo0540G0449 Vigna mungo HOM05D006328 ORTHO05D007721 1.7e-56 223.8 124 84.7
Psat5g101200 Pisum sativum HOM05D006328 ORTHO05D007721 5.0e-53 212.2 226 54.0
AagrBONN_evm.TU.Sc2ySwM_344.1649 Anthoceros agrestis HOM05D006328 ORTHO05D007721 1.3e-48 197.6 256 45.3
Sabra06G0010000 Salix brachista HOM05D006328 ORTHO05D007721 4.8e-48 195.7 104 95.2
Sc06g0004300 Simmondsia chinensis HOM05D006328 ORTHO05D007721 9.4e-44 181.4 246 49.6
vmacro22566 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 3.6e-43 179.5 105 83.8
Mapoly0048s0070 Marchantia polymorpha HOM05D006328 ORTHO05D007721 1.4e-42 177.6 211 46.4
Pp3c11_23310 Physcomitrium patens HOM05D006328 ORTHO05D007721 8.3e-40 168.3 213 46.9
CBR_g50072 Chara braunii HOM05D006328 ORTHO05D007721 3.2e-36 156.4 122 59.0
CDE07G1106 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 1.0e-34 151.4 269 38.7
CSS0049555 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 2.8e-32 143.3 108 67.6
Nn2g15765 Nelumbo nucifera HOM05D006328 ORTHO05D007721 4.8e-32 142.5 72 91.7
CSS0028438 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 9.1e-31 138.3 107 66.4
Duzib168G1709 Durio zibethinus HOM05D006328 ORTHO05D007721 2.7e-30 136.7 204 43.1
HanXRQChr04g0113321 Helianthus annuus HOM05D006328 ORTHO05D007721 1.3e-24 117.9 61 86.9
Dinv15017 Davidia involucrata HOM05D006328 ORTHO05D007721 1.3e-21 107.8 144 50.7
arahy.Tifrunner.gnm1.ann1.VB18ZC Arachis hypogaea HOM05D006328 ORTHO05D007721 4.7e-19 99.4 138 50.7
Hma1.2p1_0062F.1_g034160 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 1.4e-18 97.8 110 51.8
Nn2g15764 Nelumbo nucifera HOM05D006328 ORTHO05D007721 1.4e-18 97.8 107 54.2
HanXRQChr17g0560491 Helianthus annuus HOM05D006328 ORTHO05D007721 2.2e-16 90.5 53 81.1
unitig_899.g15354 Utricularia gibba HOM05D006328 ORTHO05D007721 6.4e-16 89.0 50 78.0
VMungo0540G1370 Vigna mungo HOM05D006328 ORTHO05D007721 6.4e-16 89.0 131 48.9
arahy.Tifrunner.gnm1.ann1.C5G03I Arachis hypogaea HOM05D006328 ORTHO05D007721 1.2e-14 84.7 126 48.4
Zm00001eb327220 Zea mays HOM05D006328 ORTHO05D007721 5.8e-09 65.9 70 54.3
arahy.Tifrunner.gnm1.ann1.RQ0K0U Arachis hypogaea HOM05D002734 ORTHO05D003035 2.4e-07 60.5 35 80.0
Dinv08842 Davidia involucrata HOM05D006328 ORTHO05D007721 5.4e-07 59.3 52 63.5


User provided reference genes

Program Settings