Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 0.0e+00 1278.1 647 100.0
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1226.8 647 96.1
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1206.8 647 94.3
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 0.0e+00 1192.6 647 92.3
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 0.0e+00 1189.5 647 92.3
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 0.0e+00 1186.4 647 91.5
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 0.0e+00 1183.3 646 92.0
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1178.3 645 91.2
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 0.0e+00 1178.3 646 91.0
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1173.3 647 90.9
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 0.0e+00 1173.3 647 91.3
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 0.0e+00 1172.5 647 90.6
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1169.5 647 90.4
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1168.7 647 89.8
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 0.0e+00 1167.9 647 90.3
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 0.0e+00 1167.5 641 91.1
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1167.1 646 90.6
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 0.0e+00 1166.8 645 90.4
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1165.6 647 90.1
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1165.6 647 90.3
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 0.0e+00 1164.4 643 91.0
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 0.0e+00 1164.4 644 90.1
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 0.0e+00 1163.7 647 90.0
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 0.0e+00 1163.7 647 89.6
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1163.3 647 90.0
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 0.0e+00 1163.3 647 89.8
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 0.0e+00 1162.5 647 90.0
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 0.0e+00 1162.5 646 89.9
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1161.7 647 89.5
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 0.0e+00 1161.4 647 89.5
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1158.3 647 89.6
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 0.0e+00 1157.9 643 89.9
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1157.5 647 89.6
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1156.4 641 90.2
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 0.0e+00 1155.6 644 89.4
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 0.0e+00 1154.8 643 89.6
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 0.0e+00 1154.0 644 89.6
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 0.0e+00 1153.7 643 89.6
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1152.1 647 89.0
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 0.0e+00 1151.7 646 89.0
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1151.0 647 88.6
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 0.0e+00 1149.0 647 88.7
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1147.5 647 87.9
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 0.0e+00 1147.5 643 88.6
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1147.1 647 88.6
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 0.0e+00 1147.1 643 88.8
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 0.0e+00 1146.3 647 89.0
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 0.0e+00 1145.6 647 88.1
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1143.6 647 88.3
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1142.9 641 89.1
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 0.0e+00 1142.9 638 89.7
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 0.0e+00 1142.5 646 88.1
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 0.0e+00 1140.2 643 88.2
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 0.0e+00 1139.8 647 87.9
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 0.0e+00 1139.8 643 88.2
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1139.0 647 87.6
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 0.0e+00 1138.6 643 88.0
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 0.0e+00 1137.9 643 87.9
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1137.9 647 87.3
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 0.0e+00 1135.9 644 87.0
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 0.0e+00 1135.2 646 87.2
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1135.2 647 87.2
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 0.0e+00 1134.0 644 86.6
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 0.0e+00 1134.0 647 88.4
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 0.0e+00 1133.6 640 87.3
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 0.0e+00 1133.2 640 86.7
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 0.0e+00 1132.9 645 86.2
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 0.0e+00 1132.1 645 87.4
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1130.9 642 88.3
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 0.0e+00 1130.5 642 88.9
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1128.6 646 86.5
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 0.0e+00 1128.2 674 84.6
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 0.0e+00 1126.7 640 86.9
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 0.0e+00 1126.7 640 87.3
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 0.0e+00 1125.5 641 87.5
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 0.0e+00 1124.4 640 86.6
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1124.4 640 87.7
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 0.0e+00 1123.6 646 87.2
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1123.2 640 86.6
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1123.2 640 86.6
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1123.2 640 86.6
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1122.8 640 86.6
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1120.9 640 86.4
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1120.5 640 86.1
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1119.0 640 87.3
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 0.0e+00 1115.5 643 87.1
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 0.0e+00 1114.8 647 85.8
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1106.7 640 84.7
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1103.6 640 84.4
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1102.8 642 84.3
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1101.7 640 84.5
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1099.7 642 84.0
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 0.0e+00 1098.2 647 85.0
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 0.0e+00 1094.3 644 84.3
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1093.6 646 84.8
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 0.0e+00 1090.9 644 84.2
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1078.5 657 83.7
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 1.8e-311 1072.0 640 82.7
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 8.9e-311 1069.7 638 83.2
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 9.7e-310 1066.2 638 82.8
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 8.2e-309 1063.1 592 89.4
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 8.5e-306 1053.1 638 81.7
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 9.5e-297 1023.1 641 78.9
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 5.6e-289 997.3 642 76.9
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 4.0e-287 991.1 541 91.3
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 1.3e-282 976.1 544 89.9
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 6.8e-279 963.8 544 88.1
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 6.6e-266 920.6 499 91.2
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 1.1e-265 919.8 658 71.4
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 4.3e-265 917.9 645 74.0
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 5.8e-262 907.5 634 72.2
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 6.6e-258 894.0 659 70.0
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 1.8e-247 859.4 513 86.0
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 4.0e-247 858.2 513 85.4
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 1.7e-245 852.8 644 71.6
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 5.6e-241 837.8 646 70.9
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 5.3e-231 804.7 648 64.4
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 9.0e-231 803.9 497 80.5
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 7.7e-222 774.2 648 61.1
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 8.8e-202 707.6 454 79.3
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 2.2e-189 666.4 543 66.9
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 3.0e-178 629.4 653 52.1
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 7.0e-175 618.2 456 70.8
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.1e-172 610.9 364 83.8
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 7.8e-166 588.2 411 74.5
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 1.6e-163 580.5 315 92.1
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 1.3e-149 534.3 296 89.5
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 1.3e-136 491.1 271 89.7
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 1.4e-111 407.9 537 42.3
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 9.7e-100 368.6 201 90.0
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 9.1e-90 335.5 240 72.1
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 1.0e-85 322.0 184 87.0
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 5.9e-81 306.2 241 66.4
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 8.8e-77 292.4 163 87.1
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 8.3e-75 285.8 647 34.2
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 9.1e-74 282.3 163 85.9
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 9.2e-58 229.2 273 49.8
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 1.5e-55 221.9 230 57.0
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 6.8e-45 186.4 104 87.5
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 2.7e-41 174.5 104 81.7
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 5.1e-40 170.2 104 77.9
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 1.5e-39 168.7 99 83.8
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 3.3e-39 167.5 160 61.9
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 1.2e-36 159.1 90 87.8
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 2.6e-36 157.9 86 83.7
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 4.1e-34 150.6 125 63.2
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 7.8e-33 146.4 101 77.2
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 2.3e-32 144.8 101 76.2
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 7.3e-31 139.8 74 83.8
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 6.9e-21 106.7 116 52.6
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 3.4e-20 104.4 53 94.3
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 9.3e-18 96.3 60 80.0
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 1.0e-16 92.8 70 64.3
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 1.7e-16 92.0 51 84.3
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 1.7e-16 92.0 49 87.8
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 5.1e-16 90.5 63 65.1
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 1.2e-12 79.3 56 66.1
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 3.5e-09 67.8 43 74.4


User provided reference genes

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