Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 5.1e-75 284.3 138 100.0
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 8.0e-52 207.2 103 98.1
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 1.6e-44 183.0 105 87.6
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 2.7e-44 182.2 105 86.7
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 2.7e-44 182.2 105 86.7
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 3.6e-44 181.8 105 86.7
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 3.6e-44 181.8 105 86.7
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 2.3e-43 179.1 105 84.8
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 3.0e-43 178.7 105 83.8
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 3.0e-43 178.7 105 83.8
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 3.0e-43 178.7 105 83.8
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 4.0e-43 178.3 105 84.8
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 5.2e-43 177.9 105 83.8
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 5.2e-43 177.9 105 84.8
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 1.2e-42 176.8 105 83.8
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 3.4e-42 175.3 105 80.0
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 4.4e-42 174.9 105 82.9
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 5.7e-42 174.5 105 82.9
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 7.5e-42 174.1 105 82.9
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 1.3e-41 173.3 105 81.9
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 1.7e-41 172.9 105 81.0
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 2.2e-41 172.6 102 84.3
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 2.2e-41 172.6 105 81.0
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 6.3e-41 171.0 107 78.5
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 8.3e-41 170.6 104 80.8
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 1.1e-40 170.2 107 78.5
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 1.8e-40 169.5 105 81.0
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 2.4e-40 169.1 106 78.3
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 2.4e-40 169.1 102 83.3
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 5.4e-40 167.9 105 81.0
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 5.4e-40 167.9 104 80.8
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 5.4e-40 167.9 104 80.8
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 7.0e-40 167.5 106 79.2
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 7.0e-40 167.5 103 78.6
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 7.0e-40 167.5 105 80.0
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 9.1e-40 167.2 104 80.8
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 1.2e-39 166.8 104 82.7
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 1.2e-39 166.8 104 79.8
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 1.2e-39 166.8 105 77.1
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 1.2e-39 166.8 105 81.9
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.0e-39 166.0 103 79.6
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 2.0e-39 166.0 104 80.8
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.7e-39 165.6 118 72.0
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 2.7e-39 165.6 104 81.7
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 3.5e-39 165.2 102 83.3
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 3.5e-39 165.2 105 80.0
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 5.9e-39 164.5 105 79.0
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 5.9e-39 164.5 102 82.4
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 5.9e-39 164.5 107 80.4
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 7.7e-39 164.1 103 78.6
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 7.7e-39 164.1 104 80.8
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 1.0e-38 163.7 106 80.2
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 1.0e-38 163.7 106 79.2
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 1.0e-38 163.7 106 79.2
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 1.0e-38 163.7 104 80.8
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 1.0e-38 163.7 103 78.6
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 1.7e-38 162.9 105 80.0
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 1.7e-38 162.9 104 78.8
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 2.2e-38 162.5 106 79.2
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 2.2e-38 162.5 103 77.7
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 2.2e-38 162.5 102 81.4
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 2.9e-38 162.2 106 79.2
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 2.9e-38 162.2 103 80.6
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 2.9e-38 162.2 104 78.8
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 3.8e-38 161.8 105 79.0
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 3.8e-38 161.8 104 78.8
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 3.8e-38 161.8 104 78.8
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 3.8e-38 161.8 104 78.8
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 3.8e-38 161.8 103 80.6
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 3.8e-38 161.8 104 77.9
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 5.0e-38 161.4 104 78.8
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 1.1e-37 160.2 106 78.3
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 1.1e-37 160.2 103 78.6
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 1.5e-37 159.8 104 76.9
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.5e-37 159.8 101 80.2
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 1.5e-37 159.8 103 75.7
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 1.9e-37 159.5 100 77.0
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 1.9e-37 159.5 104 77.9
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 2.5e-37 159.1 105 73.3
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 2.5e-37 159.1 103 80.6
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 3.2e-37 158.7 101 77.2
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.2e-37 158.7 101 77.2
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 3.2e-37 158.7 101 77.2
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 5.5e-37 157.9 105 76.2
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 5.5e-37 157.9 105 76.2
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 9.4e-37 157.1 100 74.0
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 9.4e-37 157.1 106 74.5
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 9.4e-37 157.1 105 77.1
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 9.4e-37 157.1 102 76.5
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 2.1e-36 156.0 104 72.1
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 2.1e-36 156.0 104 76.0
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 2.7e-36 155.6 105 76.2
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 2.7e-36 155.6 105 76.2
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 2.7e-36 155.6 105 76.2
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 3.6e-36 155.2 100 74.0
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 3.6e-36 155.2 100 74.0
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 3.6e-36 155.2 100 74.0
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 3.6e-36 155.2 100 74.0
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 3.6e-36 155.2 100 74.0
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 3.6e-36 155.2 100 74.0
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 3.6e-36 155.2 105 74.3
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 3.6e-36 155.2 103 75.7
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 3.6e-36 155.2 100 74.0
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 4.7e-36 154.8 134 64.9
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 8.0e-36 154.1 100 73.0
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 8.0e-36 154.1 100 73.0
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 8.0e-36 154.1 106 73.6
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 8.0e-36 154.1 105 75.2
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 1.8e-35 152.9 103 74.8
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 1.8e-35 152.9 100 74.0
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 1.8e-35 152.9 105 75.2
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 1.8e-35 152.9 104 75.0
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 2.3e-35 152.5 105 74.3
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 3.0e-35 152.1 98 74.5
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 3.0e-35 152.1 123 65.0
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 6.8e-35 151.0 106 72.6
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 8.8e-35 150.6 102 75.5
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 1.2e-34 150.2 106 71.7
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 2.0e-34 149.4 126 68.3
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 2.0e-34 149.4 100 72.0
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 2.0e-34 149.4 106 71.7
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 2.6e-34 149.1 102 74.5
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 2.6e-34 149.1 101 71.3
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 2.6e-34 149.1 105 70.5
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 4.4e-34 148.3 106 71.7
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 7.5e-34 147.5 106 68.9
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 1.1e-32 143.7 100 70.0
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 1.4e-32 143.3 115 67.0
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 5.4e-32 141.4 95 71.6
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 9.1e-32 140.6 99 72.7
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 1.6e-31 139.8 96 74.0
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 2.0e-31 139.4 104 68.3
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 3.5e-31 138.7 94 73.4
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 7.7e-31 137.5 95 72.6
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 1.3e-30 136.7 95 74.7
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 8.6e-30 134.0 135 55.6
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 1.1e-29 133.7 93 71.0
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 2.3e-27 125.9 76 85.5
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 2.3e-27 125.9 98 62.2
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 2.3e-27 125.9 107 62.6
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 6.8e-27 124.4 92 68.5
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 5.7e-26 121.3 68 83.8
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 3.7e-25 118.6 65 86.2
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 6.3e-25 117.9 138 50.0
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 2.4e-24 115.9 68 79.4
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 4.1e-24 115.2 58 93.1
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 5.4e-24 114.8 101 61.4
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 5.4e-24 114.8 101 61.4
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 5.4e-24 114.8 101 61.4
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 1.6e-23 113.2 114 58.8
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 9.5e-21 104.0 58 87.9
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 2.3e-19 99.4 74 74.3
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 5.8e-18 94.7 75 61.3
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 7.5e-18 94.4 99 46.5
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 4.9e-17 91.7 75 60.0
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 6.4e-17 91.3 75 60.0
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 1.9e-13 79.7 45 82.2
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 1.2e-12 77.0 69 60.9
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 1.8e-11 73.2 47 72.3
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 1.2e-10 70.5 37 83.8
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 7.1e-08 61.2 115 34.8
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 9.2e-08 60.8 32 84.4
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 4.6e-07 58.5 34 79.4
DCAR_008576 Daucus carota HOM05D004437 ORTHO05D005401 1.7e-06 56.6 47 61.7


User provided reference genes

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