Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0070100 Salix brachista HOM05D003831 ORTHO05D004440 1.3e-78 296.2 134 100.0
Oeu030583.1 Olea europaea HOM05D003831 ORTHO05D004440 6.6e-35 151.0 78 88.5
Oeu023101.1 Olea europaea HOM05D003831 ORTHO05D004440 4.7e-33 144.8 69 95.7
Atru.chr11.2061 Acer truncatum HOM05D003831 ORTHO05D004440 8.0e-33 144.1 75 89.3
A01p30570 Brassica napus HOM05D003831 ORTHO05D004440 1.8e-32 142.9 65 98.5
C01p38960 Brassica napus HOM05D003831 ORTHO05D004440 1.8e-32 142.9 65 98.5
ATR0661G047 Amborella trichopoda HOM05D003831 ORTHO05D004440 1.2e-31 140.2 64 98.4
ATR0763G101 Amborella trichopoda HOM05D003831 ORTHO05D004440 1.2e-31 140.2 64 98.4
Aqoxy3G02890 Aquilegia oxysepala HOM05D003831 ORTHO05D004440 1.2e-31 140.2 82 80.5
CSS0003899 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 1.2e-31 140.2 64 98.4
AUR62001616 Chenopodium quinoa HOM05D003831 ORTHO05D004440 1.2e-31 140.2 64 98.4
Cc05_g00640 Coffea canephora HOM05D003831 ORTHO05D004440 1.2e-31 140.2 64 98.4
Duzib268G1541 Durio zibethinus HOM05D003831 ORTHO05D004440 1.2e-31 140.2 64 98.4
FvH4_4g32930 Fragaria vesca HOM05D003831 ORTHO05D004440 1.2e-31 140.2 64 98.4
FAN09G4060 Fragaria x ananassa HOM05D003831 ORTHO05D004440 1.2e-31 140.2 64 98.4
FAN12G2747 Fragaria x ananassa HOM05D003831 ORTHO05D004440 1.2e-31 140.2 64 98.4
FAN17G2711 Fragaria x ananassa HOM05D003831 ORTHO05D004440 1.2e-31 140.2 64 98.4
FAN22G0891 Fragaria x ananassa HOM05D003831 ORTHO05D004440 1.2e-31 140.2 64 98.4
Gohir.A03G138000 Gossypium hirsutum HOM05D003831 ORTHO05D004440 1.2e-31 140.2 64 98.4
Gohir.A12G143800 Gossypium hirsutum HOM05D003831 ORTHO05D004440 1.2e-31 140.2 64 98.4
Gohir.D02G161000 Gossypium hirsutum HOM05D003831 ORTHO05D004440 1.2e-31 140.2 64 98.4
Gohir.D12G148500 Gossypium hirsutum HOM05D003831 ORTHO05D004440 1.2e-31 140.2 64 98.4
Gorai.005G181100 Gossypium raimondii HOM05D003831 ORTHO05D004440 1.2e-31 140.2 64 98.4
Gorai.008G159800 Gossypium raimondii HOM05D003831 ORTHO05D004440 1.2e-31 140.2 64 98.4
Hma1.2p1_0052F.1_g030070 Hydrangea macrophylla HOM05D003831 ORTHO05D004440 1.2e-31 140.2 64 98.4
Hma1.2p1_0226F.1_g095410 Hydrangea macrophylla HOM05D003831 ORTHO05D004440 1.2e-31 140.2 64 98.4
Lsat_1_v5_gn_9_15080 Lactuca sativa HOM05D003831 ORTHO05D004440 1.2e-31 140.2 66 95.5
MD05G1050000 Malus domestica HOM05D003831 ORTHO05D004440 1.2e-31 140.2 64 98.4
MD10G1057300 Malus domestica HOM05D003831 ORTHO05D004440 1.2e-31 140.2 64 98.4
Nn2g14078 Nelumbo nucifera HOM05D003831 ORTHO05D004440 1.2e-31 140.2 64 98.4
Nn4g22720 Nelumbo nucifera HOM05D003831 ORTHO05D004440 1.2e-31 140.2 64 98.4
Potri.003G102900 Populus trichocarpa HOM05D003831 ORTHO05D004440 1.2e-31 140.2 64 98.4
Potri.006G136300 Populus trichocarpa HOM05D003831 ORTHO05D004440 1.2e-31 140.2 64 98.4
Prupe.1G250300 Prunus persica HOM05D003831 ORTHO05D004440 1.2e-31 140.2 64 98.4
Thecc.09G367000 Theobroma cacao HOM05D003831 ORTHO05D004440 1.2e-31 140.2 64 98.4
GSVIVG01013776001 Vitis vinifera HOM05D003831 ORTHO05D004440 1.2e-31 140.2 64 98.4
BcaB04g20364 Brassica carinata HOM05D003831 ORTHO05D004440 2.0e-31 139.4 64 96.9
Thhalv10023792m.g Eutrema salsugineum HOM05D003831 ORTHO05D004440 2.0e-31 139.4 64 96.9
Sabra06G0106500 Salix brachista HOM05D003831 ORTHO05D004440 2.0e-31 139.4 63 100.0
TAR622G1207 Trochodendron aralioides HOM05D003831 ORTHO05D004440 2.0e-31 139.4 63 100.0
HanXRQChr04g0108041 Helianthus annuus HOM05D003831 ORTHO05D004440 2.6e-31 139.0 64 96.9
HanXRQChr14g0445611 Helianthus annuus HOM05D003831 ORTHO05D004440 2.6e-31 139.0 64 96.9
Lsat_1_v5_gn_8_89360 Lactuca sativa HOM05D003831 ORTHO05D004440 2.6e-31 139.0 64 96.9
PGSC0003DMG400020165 Solanum tuberosum HOM05D003831 ORTHO05D004440 2.6e-31 139.0 66 95.5
Actinidia39431 Actinidia chinensis HOM05D003831 ORTHO05D004440 3.4e-31 138.7 67 94.0
AagrBONN_evm.TU.Sc2ySwM_368.1682 Anthoceros agrestis HOM05D003831 ORTHO05D004440 3.4e-31 138.7 64 96.9
CANSAT01G0447 Cannabis sativa HOM05D003831 ORTHO05D004440 3.4e-31 138.7 64 96.9
CANSAT01G0707 Cannabis sativa HOM05D003831 ORTHO05D004440 3.4e-31 138.7 64 96.9
Cpa.g.sc12.279 Carica papaya HOM05D003831 ORTHO05D004440 3.4e-31 138.7 64 96.9
Dinv12651 Davidia involucrata HOM05D003831 ORTHO05D004440 3.4e-31 138.7 64 96.9
Dinv19174 Davidia involucrata HOM05D003831 ORTHO05D004440 3.4e-31 138.7 64 96.9
Glyma.04G094900 Glycine max HOM05D003831 ORTHO05D004440 3.4e-31 138.7 64 96.9
Glyma.06G096400 Glycine max HOM05D003831 ORTHO05D004440 3.4e-31 138.7 64 96.9
Lalb_Chr05g0228561 Lupinus albus HOM05D003831 ORTHO05D004440 3.4e-31 138.7 64 96.9
Manes.12G047300 Manihot esculenta HOM05D003831 ORTHO05D004440 3.4e-31 138.7 64 96.9
Mapoly0054s0132 Marchantia polymorpha HOM05D003831 ORTHO05D004440 3.4e-31 138.7 64 96.9
Phvul.009G036800 Phaseolus vulgaris HOM05D003831 ORTHO05D004440 3.4e-31 138.7 64 96.9
Sp2g02850 Schrenkiella parvula HOM05D003831 ORTHO05D004440 3.4e-31 138.7 64 95.3
THA.LOC104809603 Tarenaya hassleriana HOM05D003831 ORTHO05D004440 3.4e-31 138.7 64 96.9
THA.LOC104819397 Tarenaya hassleriana HOM05D003831 ORTHO05D004440 3.4e-31 138.7 64 96.9
Ca_03143_v3 Cicer arietinum L. HOM05D003831 ORTHO05D004440 4.4e-31 138.3 64 96.9
TPR.G30065 Trifolium pratense HOM05D003831 ORTHO05D004440 4.4e-31 138.3 64 96.9
TWI18G0137 Tripterygium wilfordii HOM05D003831 ORTHO05D004440 4.4e-31 138.3 64 96.9
Haze_03725 Corylus avellana HOM05D003831 ORTHO05D004440 5.8e-31 137.9 65 93.8
DCAR_018638 Daucus carota HOM05D003831 ORTHO05D004440 5.8e-31 137.9 64 96.9
Os11g0194800 Oryza sativa ssp. japonica HOM05D003831 ORTHO05D004440 5.8e-31 137.9 64 96.9
Os12g0180400 Oryza sativa ssp. japonica HOM05D003831 ORTHO05D004440 5.8e-31 137.9 64 96.9
RcHm_v2.0_Chr4g0441961 Rosa chinensis HOM05D003831 ORTHO05D004440 5.8e-31 137.9 64 96.9
RcHm_v2.0_Chr5g0051151 Rosa chinensis HOM05D003831 ORTHO05D004440 5.8e-31 137.9 64 96.9
SGA_v2.0_scaffold118G32461 Striga asiatica HOM05D002896 ORTHO05D003263 5.8e-31 137.9 63 98.4
CiPaw.05G186000 Carya illinoinensis HOM05D003831 ORTHO05D004440 7.5e-31 137.5 64 95.3
CiPaw.06G070400 Carya illinoinensis HOM05D003831 ORTHO05D004440 7.5e-31 137.5 64 95.3
Haze_22255 Corylus avellana HOM05D003831 ORTHO05D004440 7.5e-31 137.5 64 95.3
Glyma.01G029400 Glycine max HOM05D003831 ORTHO05D004440 7.5e-31 137.5 64 95.3
Glyma.02G035900 Glycine max HOM05D003831 ORTHO05D004440 7.5e-31 137.5 64 95.3
EL10Ac7g17904 Beta vulgaris HOM05D003831 ORTHO05D004440 9.8e-31 137.1 71 91.5
Ciclev10033492m.g Citrus clementina HOM05D003831 ORTHO05D004440 9.8e-31 137.1 63 98.4
Medtr4g075600 Medicago truncatula HOM05D003831 ORTHO05D004440 9.8e-31 137.1 64 95.3
Medtr5g034050 Medicago truncatula HOM05D003831 ORTHO05D004440 9.8e-31 137.1 64 95.3
Psat2g105160 Pisum sativum HOM05D003831 ORTHO05D004440 9.8e-31 137.1 64 95.3
ECA236G1103 Erigeron canadensis HOM05D003831 ORTHO05D004440 1.3e-30 136.7 64 95.3
Manes.13G049300 Manihot esculenta HOM05D003831 ORTHO05D004440 1.3e-30 136.7 64 95.3
AL2G14420 Arabidopsis lyrata HOM05D003831 ORTHO05D004440 1.7e-30 136.3 64 93.8
AT1G61700 Arabidopsis thaliana HOM05D003831 ORTHO05D004440 1.7e-30 136.3 64 93.8
Carub.0002s0336 Capsella rubella HOM05D003831 ORTHO05D004440 1.7e-30 136.3 64 93.8
PSO063G5975 Papaver somniferum HOM05D003831 ORTHO05D004440 1.7e-30 136.3 64 95.3
PSO832G3076 Papaver somniferum HOM05D003831 ORTHO05D004440 1.7e-30 136.3 64 95.3
Pp3c1_41980 Physcomitrium patens HOM05D003831 ORTHO05D004440 1.7e-30 136.3 64 95.3
Aa31LG2G9120 Aethionema arabicum HOM05D003831 ORTHO05D004440 2.2e-30 136.0 64 95.3
MELO3C030275.2 Cucumis melo HOM05D003831 ORTHO05D004440 2.2e-30 136.0 64 95.3
CsaV3_2G032780 Cucumis sativus L. HOM05D003831 ORTHO05D004440 2.2e-30 136.0 64 95.3
QL03p059349 Quercus lobata HOM05D003831 ORTHO05D004440 2.2e-30 136.0 64 93.8
Sed0002295 Sechium edule HOM05D003831 ORTHO05D004440 2.2e-30 136.0 64 95.3
arahy.Tifrunner.gnm1.ann1.5T40TZ Arachis hypogaea HOM05D003831 ORTHO05D004440 2.9e-30 135.6 64 93.8
arahy.Tifrunner.gnm1.ann1.TXPA6B Arachis hypogaea HOM05D003831 ORTHO05D004440 2.9e-30 135.6 64 93.8
arahy.Tifrunner.gnm1.ann1.Y183F3 Arachis hypogaea HOM05D003831 ORTHO05D004440 2.9e-30 135.6 64 93.8
Eucgr.C02278 Eucalyptus grandis HOM05D003831 ORTHO05D004440 2.9e-30 135.6 64 95.3
PGR102G1072 Punica granatum HOM05D003831 ORTHO05D004440 2.9e-30 135.6 64 95.3
PGR119G1391 Punica granatum HOM05D003831 ORTHO05D004440 2.9e-30 135.6 64 95.3
SEGI_11017 Sequoiadendron giganteum HOM05D003831 ORTHO05D004440 2.9e-30 135.6 64 95.3
BraA06t24008Z Brassica rapa HOM05D003831 ORTHO05D004440 3.7e-30 135.2 64 95.3
Lj2g0005470 Lotus japonicus HOM05D003831 ORTHO05D004440 3.7e-30 135.2 64 93.8
Lj2g0012017 Lotus japonicus HOM05D003831 ORTHO05D004440 3.7e-30 135.2 64 93.8
Lj2g0021234 Lotus japonicus HOM05D003831 ORTHO05D004440 3.7e-30 135.2 64 93.8
SMO358G0606 Selaginella moellendorffii HOM05D003831 ORTHO05D004440 3.7e-30 135.2 64 95.3
ClCG08G017910 Citrullus lanatus HOM05D003831 ORTHO05D004440 4.9e-30 134.8 64 93.8
CsaV3_5G031450 Cucumis sativus L. HOM05D003831 ORTHO05D004440 6.4e-30 134.4 64 93.8
vmacro14731 Vaccinium macrocarpon HOM05D003831 ORTHO05D004440 6.4e-30 134.4 64 93.8
BcaB03g13254 Brassica carinata HOM05D003831 ORTHO05D004440 8.3e-30 134.0 64 93.8
BcaC05g25023 Brassica carinata HOM05D003831 ORTHO05D004440 8.3e-30 134.0 64 93.8
BcaC07g38667 Brassica carinata HOM05D003831 ORTHO05D004440 8.3e-30 134.0 64 93.8
A06p08090 Brassica napus HOM05D003831 ORTHO05D004440 8.3e-30 134.0 64 93.8
A08p33450 Brassica napus HOM05D003831 ORTHO05D004440 8.3e-30 134.0 64 93.8
C05p09670 Brassica napus HOM05D003831 ORTHO05D004440 8.3e-30 134.0 64 93.8
BolC5t29708H Brassica oleracea HOM05D003831 ORTHO05D004440 8.3e-30 134.0 64 93.8
BolC8t49100H Brassica oleracea HOM05D003831 ORTHO05D004440 8.3e-30 134.0 64 93.8
BraA08t35261Z Brassica rapa HOM05D003831 ORTHO05D004440 8.3e-30 134.0 64 93.8
CAN.G874.5 Capsicum annuum HOM05D003831 ORTHO05D004440 8.3e-30 134.0 64 93.8
Lalb_Chr16g0382181 Lupinus albus HOM05D003831 ORTHO05D004440 8.3e-30 134.0 64 93.8
Nitab4.5_0003020g0070 Nicotiana tabacum HOM05D003831 ORTHO05D004440 8.3e-30 134.0 64 93.8
Nitab4.5_0009005g0010 Nicotiana tabacum HOM05D003831 ORTHO05D004440 8.3e-30 134.0 64 93.8
Peaxi162Scf00515g00317 Petunia axillaris HOM05D003831 ORTHO05D004440 8.3e-30 134.0 64 93.8
Sp1g10090 Schrenkiella parvula HOM05D003831 ORTHO05D004440 8.3e-30 134.0 64 93.8
QL03p062311 Quercus lobata HOM05D003831 ORTHO05D004440 1.1e-29 133.7 64 92.2
QL03p062353 Quercus lobata HOM05D003831 ORTHO05D004440 1.1e-29 133.7 64 92.2
Solyc06g083360.3 Solanum lycopersicum HOM05D003831 ORTHO05D004440 1.1e-29 133.7 64 93.8
Sopen06g034730 Solanum pennellii HOM05D003831 ORTHO05D004440 1.1e-29 133.7 64 93.8
Migut.C01236 Erythranthe guttata HOM05D003831 ORTHO05D004440 1.4e-29 133.3 64 93.8
Thhalv10009269m.g Eutrema salsugineum HOM05D003831 ORTHO05D004440 1.4e-29 133.3 64 93.8
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 1.4e-29 133.3 73 86.3
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 1.4e-29 133.3 64 93.8
SalBow6G3444 Salvia bowleyana HOM05D003831 ORTHO05D004440 1.4e-29 133.3 64 93.8
unitig_62.g23596 Utricularia gibba HOM05D003831 ORTHO05D004440 1.4e-29 133.3 64 93.8
AL1G22580 Arabidopsis lyrata HOM05D003831 ORTHO05D004440 1.9e-29 132.9 64 93.8
AT1G11475 Arabidopsis thaliana HOM05D003831 ORTHO05D004440 1.9e-29 132.9 64 93.8
Carub.0001s1108 Capsella rubella HOM05D003831 ORTHO05D004440 1.9e-29 132.9 64 93.8
Carub.0005s0891 Capsella rubella HOM05D003831 ORTHO05D004440 1.9e-29 132.9 64 93.8
ClCG05G025450 Citrullus lanatus HOM05D003831 ORTHO05D004440 1.9e-29 132.9 64 92.2
CARHR011740 Cardamine hirsuta HOM05D003831 ORTHO05D004440 3.2e-29 132.1 64 93.8
CARHR255430 Cardamine hirsuta HOM05D003831 ORTHO05D004440 3.2e-29 132.1 64 93.8
MBI16_g09348_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 3.2e-29 132.1 64 93.8
MBI16_g42769_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 3.2e-29 132.1 64 93.8
Sc05g0001950 Simmondsia chinensis HOM05D003831 ORTHO05D004440 5.4e-29 131.3 76 82.9
Zm00001eb366170 Zea mays HOM05D003831 ORTHO05D004440 5.4e-29 131.3 64 92.2
Zm00001eb408310 Zea mays HOM05D003831 ORTHO05D004440 5.4e-29 131.3 64 92.2
MCO02G327 Micromonas commoda HOM05D003831 ORTHO05D004440 2.0e-28 129.4 64 92.2
CDE06G1630 Ceratophyllum demersum HOM05D003831 ORTHO05D004440 4.6e-28 128.3 80 77.5
Medtr5g034040 Medicago truncatula HOM05D003831 ORTHO05D004440 6.0e-28 127.9 63 87.3
Cre13.g571650 Chlamydomonas reinhardtii HOM05D003831 ORTHO05D004440 7.8e-28 127.5 64 89.1
Haze_26646 Corylus avellana HOM05D003831 ORTHO05D004440 1.3e-27 126.7 64 89.1
MBI10_g21415_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 2.3e-27 125.9 64 90.6
PRCOL_00001275 Prasinoderma coloniale HOM05D003831 ORTHO05D004440 1.1e-26 123.6 64 85.9
BolC1t03846H Brassica oleracea HOM05D003831 ORTHO05D004440 1.9e-26 122.9 96 64.6
ClCG08G007960 Citrullus lanatus HOM05D003831 ORTHO05D004440 2.3e-24 115.9 82 65.9
BraA01t03189Z Brassica rapa HOM05D003831 ORTHO05D004440 4.0e-24 115.2 116 53.4
MBI05_g22037_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 2.0e-23 112.8 52 98.1
Rhsim13G0097000 Rhododendron simsii HOM05D003831 ORTHO05D004440 3.4e-23 112.1 126 50.0
FAN21G2637 Fragaria x ananassa HOM05D003831 ORTHO05D004440 5.8e-23 111.3 52 96.2
FAN25G2861 Fragaria x ananassa HOM05D003831 ORTHO05D004440 5.8e-23 111.3 52 96.2
SGA_v2.0_scaffold24G10536 Striga asiatica HOM05D003831 ORTHO05D004440 5.8e-23 111.3 52 96.2
CBR_g48986 Chara braunii HOM05D003831 ORTHO05D004440 7.5e-23 110.9 52 94.2
MBI14_g22904_MAGBIO Magnolia biondii HOM05D000106 ORTHO05D002214 1.3e-22 110.2 53 94.3
MELO3C034128.2 Cucumis melo HOM05D003831 ORTHO05D004440 1.7e-22 109.8 54 90.7
FAN16G2980 Fragaria x ananassa HOM05D003831 ORTHO05D004440 3.7e-22 108.6 52 92.3
Sed0002376 Sechium edule HOM05D003831 ORTHO05D004440 4.1e-21 105.1 64 76.6
C04p07400 Brassica napus HOM05D003831 ORTHO05D004440 1.2e-17 93.6 42 97.6
BolC4t22361H Brassica oleracea HOM05D003831 ORTHO05D004440 1.2e-17 93.6 42 97.6
arahy.Tifrunner.gnm1.ann1.Z8M7EL Arachis hypogaea HOM05D003831 ORTHO05D004440 8.1e-17 90.9 64 73.4
Sed0003810 Sechium edule HOM05D003831 ORTHO05D004440 1.5e-15 86.7 63 60.3
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 2.6e-15 85.9 91 51.6
Lj2g0013677 Lotus japonicus HOM05D003831 ORTHO05D004440 3.4e-15 85.5 62 56.5
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 4.4e-15 85.1 49 79.6
CSS0011229 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 5.4e-13 78.2 33 100.0
C09p50350 Brassica napus HOM05D003831 ORTHO05D004440 2.7e-12 75.9 32 100.0
Thecc.02G253800 Theobroma cacao HOM05D003831 ORTHO05D004440 2.7e-12 75.9 32 100.0
COL.COLO4_24205 Corchorus olitorius HOM05D003831 ORTHO05D004440 3.5e-12 75.5 53 71.7
Ah.15g093500 Amaranthus hybridus HOM05D003831 ORTHO05D004440 1.0e-11 73.9 32 96.9
Lalb_Chr05g0216761 Lupinus albus HOM05D003831 ORTHO05D004440 2.3e-11 72.8 32 93.8
Actinidia30054 Actinidia chinensis HOM05D003831 ORTHO05D004440 5.1e-11 71.6 32 93.8
CSS0004603 Camellia sinensis var. sinensis HOM05D003831 ORTHO05D004440 6.6e-11 71.2 35 94.3
SHI17512 Sapria himalayana HOM05D000002 ORTHO05D000001 1.1e-10 70.5 34 94.1
MBI10_g27999_MAGBIO Magnolia biondii HOM05D003831 ORTHO05D004440 1.5e-10 70.1 39 89.7
arahy.Tifrunner.gnm1.ann1.GNJG0F Arachis hypogaea HOM05D003831 ORTHO05D004440 1.1e-08 63.9 32 84.4
TPR.G17155 Trifolium pratense HOM05D003831 ORTHO05D004440 7.6e-07 57.8 31 80.6


User provided reference genes

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