Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0049000 Salix brachista HOM05D004377 ORTHO05D005168 3.7e-216 754.6 383 100.0
Potri.003G078900 Populus trichocarpa HOM05D004377 ORTHO05D005168 3.9e-141 505.4 266 96.2
Potri.001G155900 Populus trichocarpa HOM05D004377 ORTHO05D005168 7.9e-134 481.1 266 91.0
Manes.02G041200 Manihot esculenta HOM05D004377 ORTHO05D005168 5.9e-129 464.9 266 87.6
Sabra01G0125600 Salix brachista HOM05D004377 ORTHO05D005168 7.7e-129 464.5 294 82.3
Cfa012684 Carpinus fangiana HOM05D004377 ORTHO05D005168 1.4e-125 453.8 266 85.3
Atru.chr9.1283 Acer truncatum HOM05D004377 ORTHO05D005168 2.3e-125 453.0 264 85.2
Ciclev10021569m.g Citrus clementina HOM05D004377 ORTHO05D005168 3.0e-125 452.6 266 84.6
CANSAT21G0788 Cannabis sativa HOM05D004377 ORTHO05D005168 4.4e-124 448.7 266 85.3
Duzib205G1290 Durio zibethinus HOM05D004377 ORTHO05D005168 7.4e-124 448.0 264 83.3
Thecc.03G248500 Theobroma cacao HOM05D004377 ORTHO05D005168 9.7e-124 447.6 266 83.1
RcHm_v2.0_Chr7g0203831 Rosa chinensis HOM05D004377 ORTHO05D005168 1.7e-123 446.8 266 83.5
CsaV3_5G004410 Cucumis sativus L. HOM05D004377 ORTHO05D005168 2.8e-123 446.0 281 77.9
Gohir.D12G218200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 2.8e-123 446.0 266 83.1
Gorai.008G233800 Gossypium raimondii HOM05D004377 ORTHO05D005168 2.8e-123 446.0 266 83.1
FAN08G2251 Fragaria x ananassa HOM05D004377 ORTHO05D005168 4.8e-123 445.3 266 83.5
FAN18G3774 Fragaria x ananassa HOM05D004377 ORTHO05D005168 4.8e-123 445.3 266 83.5
MELO3C005517.2 Cucumis melo HOM05D004377 ORTHO05D005168 6.3e-123 444.9 281 77.6
COL.COLO4_37134 Corchorus olitorius HOM05D004377 ORTHO05D005168 1.1e-122 444.1 266 81.6
FAN13G0320 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.4e-122 443.7 266 82.7
GSVIVG01006273001 Vitis vinifera HOM05D004377 ORTHO05D005168 1.4e-122 443.7 270 83.3
Gohir.A12G215600 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.8e-122 443.4 266 82.3
FAN04G2360 Fragaria x ananassa HOM05D004377 ORTHO05D005168 2.4e-122 443.0 266 83.1
CiPaw.12G050900 Carya illinoinensis HOM05D004377 ORTHO05D005168 7.0e-122 441.4 266 82.7
Sed0026125 Sechium edule HOM05D004377 ORTHO05D005168 9.1e-122 441.0 266 80.5
Medtr4g100740 Medicago truncatula HOM05D004377 ORTHO05D005168 4.5e-121 438.7 266 81.2
Dinv39164 Davidia involucrata HOM05D004377 ORTHO05D005168 1.0e-120 437.6 266 80.8
TWI81G0568 Tripterygium wilfordii HOM05D004377 ORTHO05D005168 1.0e-120 437.6 281 77.6
Eucgr.D02097 Eucalyptus grandis HOM05D004377 ORTHO05D005168 1.7e-120 436.8 266 82.0
Ca_21977_v3 Cicer arietinum L. HOM05D004377 ORTHO05D005168 2.2e-120 436.4 266 80.5
ClCG01G004220 Citrullus lanatus HOM05D004377 ORTHO05D005168 2.2e-120 436.4 292 74.7
MD06G1053000 Malus domestica HOM05D004377 ORTHO05D005168 2.2e-120 436.4 281 77.9
Hma1.2p1_0316F.1_g122900 Hydrangea macrophylla HOM05D004377 ORTHO05D005168 6.5e-120 434.9 266 80.8
CSS0001039 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 8.5e-120 434.5 264 80.7
Haze_07947 Corylus avellana HOM05D004377 ORTHO05D005168 8.5e-120 434.5 285 78.2
Glyma.05G061700 Glycine max HOM05D004377 ORTHO05D005168 8.5e-120 434.5 266 80.8
Psat4g072760 Pisum sativum HOM05D004377 ORTHO05D005168 1.1e-119 434.1 266 80.8
PGR031G0408 Punica granatum HOM05D004377 ORTHO05D005168 1.9e-119 433.3 266 81.2
Prupe.5G065700 Prunus persica HOM05D004377 ORTHO05D005168 2.5e-119 433.0 266 81.2
TPR.G37661 Trifolium pratense HOM05D004377 ORTHO05D005168 2.5e-119 433.0 266 80.1
Glyma.17G143400 Glycine max HOM05D004377 ORTHO05D005168 7.2e-119 431.4 266 81.2
MD04G1059900 Malus domestica HOM05D004377 ORTHO05D005168 9.4e-119 431.0 266 80.5
VMungo0251G2239 Vigna mungo HOM05D004377 ORTHO05D005168 1.2e-118 430.6 264 80.7
Phvul.003G222200 Phaseolus vulgaris HOM05D004377 ORTHO05D005168 3.6e-118 429.1 266 80.1
Dinv21652 Davidia involucrata HOM05D004377 ORTHO05D005168 1.4e-117 427.2 281 76.2
Lj4g0001332 Lotus japonicus HOM05D004377 ORTHO05D005168 3.0e-117 426.0 266 79.3
Sed0028099 Sechium edule HOM05D004377 ORTHO05D005168 5.2e-117 425.2 264 78.0
Lj8A268T28 Lonicera japonica HOM05D004377 ORTHO05D005168 8.8e-117 424.5 265 76.2
Nn4g26339 Nelumbo nucifera HOM05D004377 ORTHO05D005168 8.8e-117 424.5 266 78.6
Nn1g02340 Nelumbo nucifera HOM05D004377 ORTHO05D005168 1.1e-116 424.1 266 78.2
CAN.G1227.21 Capsicum annuum HOM05D004377 ORTHO05D005168 1.5e-116 423.7 279 75.3
Gohir.A11G027200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 3.3e-116 422.5 266 77.8
Solyc08g007320.3 Solanum lycopersicum HOM05D004377 ORTHO05D005168 4.4e-116 422.2 279 75.3
Lalb_Chr16g0386801 Lupinus albus HOM05D004377 ORTHO05D005168 9.7e-116 421.0 279 75.6
arahy.Tifrunner.gnm1.ann1.XFA1VC Arachis hypogaea HOM05D004377 ORTHO05D005168 1.3e-115 420.6 264 79.5
Peaxi162Scf00102g00106 Petunia axillaris HOM05D004377 ORTHO05D005168 1.3e-115 420.6 279 74.6
Migut.A01127 Erythranthe guttata HOM05D004377 ORTHO05D005168 1.7e-115 420.2 279 74.9
vmacro00002 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 8.2e-115 417.9 264 76.9
Lalb_Chr05g0221171 Lupinus albus HOM05D004377 ORTHO05D005168 1.4e-114 417.2 279 75.3
Cc08_g12200 Coffea canephora HOM05D004377 ORTHO05D005168 3.1e-114 416.0 279 71.7
HanXRQChr03g0088831 Helianthus annuus HOM05D004377 ORTHO05D005168 5.3e-114 415.2 279 74.6
Actinidia10840 Actinidia chinensis HOM05D004377 ORTHO05D005168 7.0e-114 414.8 266 76.7
Actinidia02148 Actinidia chinensis HOM05D004377 ORTHO05D005168 2.0e-113 413.3 266 77.1
Lsat_1_v5_gn_6_92481 Lactuca sativa HOM05D004377 ORTHO05D005168 2.0e-113 413.3 279 74.6
TAR375G0521 Trochodendron aralioides HOM05D004377 ORTHO05D005168 3.5e-113 412.5 270 76.3
DCAR_008505 Daucus carota HOM05D004377 ORTHO05D005168 5.9e-113 411.8 279 74.6
ECA240G2341 Erigeron canadensis HOM05D004377 ORTHO05D005168 1.3e-112 410.6 279 74.2
Cpa.g.sc29.192 Carica papaya HOM05D004377 ORTHO05D005168 1.7e-112 410.2 239 84.9
Lj4g0011374 Lotus japonicus HOM05D004377 ORTHO05D005168 2.9e-112 409.5 266 77.1
CSS0042619 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 5.0e-112 408.7 253 77.9
Nitab4.5_0000712g0120 Nicotiana tabacum HOM05D004377 ORTHO05D005168 6.5e-112 408.3 271 74.9
DCAR_006841 Daucus carota HOM05D004377 ORTHO05D005168 8.5e-112 407.9 265 74.7
MSTRG.12119 Avicennia marina HOM05D004377 ORTHO05D005168 1.9e-111 406.8 281 70.5
Sc07g0009230 Simmondsia chinensis HOM05D004377 ORTHO05D005168 5.5e-111 405.2 267 74.9
AUR62007109 Chenopodium quinoa HOM05D004377 ORTHO05D005168 2.7e-110 402.9 267 75.7
Nitab4.5_0002225g0040 Nicotiana tabacum HOM05D004377 ORTHO05D005168 2.7e-110 402.9 285 71.9
THA.LOC104798366 Tarenaya hassleriana HOM05D004377 ORTHO05D005168 2.7e-110 402.9 267 77.2
Aqoxy5G00459 Aquilegia oxysepala HOM05D004377 ORTHO05D005168 6.1e-110 401.7 266 74.1
PSO832G1836 Papaver somniferum HOM05D004377 ORTHO05D005168 6.1e-110 401.7 264 74.6
Sp2g12120 Schrenkiella parvula HOM05D004377 ORTHO05D005168 6.1e-110 401.7 267 76.8
BraA02t08132Z Brassica rapa HOM05D004377 ORTHO05D005168 8.0e-110 401.4 265 75.8
vmacro14068 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 1.0e-109 401.0 264 75.4
PSO210G5659 Papaver somniferum HOM05D004377 ORTHO05D005168 6.8e-109 398.3 264 73.9
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 1.2e-108 397.5 268 76.5
Gohir.D11G026400 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.2e-108 397.5 266 74.8
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 1.5e-108 397.1 267 75.3
arahy.Tifrunner.gnm1.ann1.E2A47G Arachis hypogaea HOM05D004377 ORTHO05D005168 1.5e-108 397.1 325 65.8
Thhalv10000986m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 1.5e-108 397.1 267 74.5
Ah.12g054290 Amaranthus hybridus HOM05D004377 ORTHO05D005168 5.7e-108 395.2 262 74.4
Carub.0008s0037 Capsella rubella HOM05D004377 ORTHO05D005168 1.3e-107 394.0 267 75.3
AL8G10630 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 2.8e-107 392.9 267 74.9
CARHR173960 Cardamine hirsuta HOM05D004377 ORTHO05D005168 6.3e-107 391.7 267 74.2
Rhsim07G0110500 Rhododendron simsii HOM05D004377 ORTHO05D005168 6.3e-107 391.7 274 72.3
BolC2t10957H Brassica oleracea HOM05D004377 ORTHO05D005168 1.1e-106 391.0 265 74.7
AT5G47420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 2.4e-106 389.8 267 74.2
arahy.Tifrunner.gnm1.ann1.ID9RWP Arachis hypogaea HOM05D004377 ORTHO05D005168 2.4e-106 389.8 266 74.8
Duzib068G0502 Durio zibethinus HOM05D004377 ORTHO05D005168 3.1e-106 389.4 266 75.2
ATR0697G021 Amborella trichopoda HOM05D004377 ORTHO05D005168 4.1e-106 389.0 281 69.4
A01p19930 Brassica napus HOM05D004377 ORTHO05D005168 4.1e-106 389.0 268 75.0
BraA01t01921Z Brassica rapa HOM05D004377 ORTHO05D005168 5.4e-106 388.7 268 75.0
CARHR224020 Cardamine hirsuta HOM05D004377 ORTHO05D005168 5.4e-106 388.7 268 73.9
A01p19950 Brassica napus HOM05D004377 ORTHO05D005168 9.1e-106 387.9 268 75.0
AL7G37300 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 1.6e-105 387.1 268 74.3
AT4G17420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 1.6e-105 387.1 268 73.9
BcaC09g50474 Brassica carinata HOM05D004377 ORTHO05D005168 1.6e-105 387.1 268 74.6
BcaNung00095 Brassica carinata HOM05D004377 ORTHO05D005168 1.6e-105 387.1 268 74.3
HanXRQChr17g0549351 Helianthus annuus HOM05D004377 ORTHO05D005168 1.6e-105 387.1 281 70.1
Carub.0007s2400 Capsella rubella HOM05D004377 ORTHO05D005168 2.7e-105 386.3 268 73.9
Thhalv10025916m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 2.7e-105 386.3 268 73.5
Sp7g16770 Schrenkiella parvula HOM05D004377 ORTHO05D005168 7.7e-105 384.8 268 72.8
C01p25030 Brassica napus HOM05D004377 ORTHO05D005168 1.3e-104 384.0 268 74.3
Lalb_Chr04g0253671 Lupinus albus HOM05D004377 ORTHO05D005168 2.9e-104 382.9 266 74.1
A02p31280 Brassica napus HOM05D004377 ORTHO05D005168 1.5e-103 380.6 309 64.7
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 1.9e-103 380.2 268 74.3
CDE02G4267 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 2.1e-102 376.7 268 68.3
HPP92_007932 Vanilla planifolia HOM05D004377 ORTHO05D005168 3.6e-102 375.9 266 66.5
HPP92_007952 Vanilla planifolia HOM05D004377 ORTHO05D005168 3.6e-102 375.9 266 66.5
BolC1t02447H Brassica oleracea HOM05D004377 ORTHO05D005168 6.1e-102 375.2 260 74.2
RcHm_v2.0_Chr7g0203871 Rosa chinensis HOM05D004377 ORTHO05D005168 1.4e-101 374.0 266 73.7
SGA_v2.0_scaffold199G41183 Striga asiatica HOM05D004377 ORTHO05D005168 3.0e-101 372.9 310 63.2
BcaC03g16958 Brassica carinata HOM05D004377 ORTHO05D005168 8.8e-101 371.3 266 73.3
C02p48650 Brassica napus HOM05D004377 ORTHO05D005168 8.8e-101 371.3 266 73.3
CDE05G2427 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 2.0e-100 370.2 268 66.8
AUR62019971 Chenopodium quinoa HOM05D004377 ORTHO05D005168 4.4e-100 369.0 267 70.8
TAR629G1293 Trochodendron aralioides HOM05D004377 ORTHO05D005168 7.5e-100 368.2 266 69.5
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 1.3e-99 367.5 272 71.7
Sopen08g003260 Solanum pennellii HOM05D004377 ORTHO05D005168 1.1e-98 364.4 229 77.3
Gorai.007G028700 Gossypium raimondii HOM05D004377 ORTHO05D005168 5.4e-98 362.1 266 70.7
SEGI_38141 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 1.7e-96 357.1 264 67.8
Lsat_1_v5_gn_3_1221 Lactuca sativa HOM05D004377 ORTHO05D005168 2.3e-93 346.7 286 64.0
unitig_736.g22277 Utricularia gibba HOM05D004377 ORTHO05D005168 3.0e-93 346.3 231 72.7
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 5.2e-93 345.5 234 75.6
MBI09_g26154_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 5.7e-92 342.0 290 60.7
SHI09598 Sapria himalayana HOM05D004377 ORTHO05D005168 1.3e-91 340.9 266 65.4
Os03g0747300 Oryza sativa ssp. japonica HOM05D004377 ORTHO05D005168 2.7e-89 333.2 267 59.6
FvH4_5g19370 Fragaria vesca HOM05D004377 ORTHO05D005168 1.3e-88 330.9 197 81.7
EL10Ac5g12360 Beta vulgaris HOM05D004377 ORTHO05D005168 9.5e-87 324.7 267 65.2
MBI08_g41738_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 1.6e-86 323.9 265 61.1
arahy.Tifrunner.gnm1.ann1.CS1SDE Arachis hypogaea HOM05D004377 ORTHO05D005168 4.0e-85 319.3 325 57.5
RcHm_v2.0_Chr2g0120481 Rosa chinensis HOM05D004377 ORTHO05D005168 3.4e-84 316.2 207 74.4
BcaC06g34256 Brassica carinata HOM05D004377 ORTHO05D005168 6.4e-83 312.0 249 67.9
SGA_v2.0_scaffold199G41214 Striga asiatica HOM05D004377 ORTHO05D005168 1.4e-82 310.8 212 71.2
Nitab4.5_0000618g0130 Nicotiana tabacum HOM05D004377 ORTHO05D005168 4.6e-81 305.8 278 58.3
Actinidia14411 Actinidia chinensis HOM05D004377 ORTHO05D005168 6.0e-81 305.4 242 68.6
Oeu027011.1 Olea europaea HOM05D004377 ORTHO05D005168 8.6e-72 275.0 236 60.6
BcaC06g31391 Brassica carinata HOM05D004377 ORTHO05D005168 5.6e-71 272.3 245 62.0
SMO356G0134 Selaginella moellendorffii HOM05D004377 ORTHO05D005168 1.1e-69 268.1 262 54.6
Zm00001eb057110 Zea mays HOM05D004377 ORTHO05D005168 9.6e-63 245.0 197 58.4
FAN15G2264 Fragaria x ananassa HOM05D004377 ORTHO05D005168 7.8e-57 225.3 282 51.4
FAN27G2545 Fragaria x ananassa HOM05D004377 ORTHO05D005168 7.3e-55 218.8 328 45.1
Actinidia31514 Actinidia chinensis HOM05D004377 ORTHO05D005168 5.4e-50 202.6 216 56.5
Oeu012199.1 Olea europaea HOM05D004377 ORTHO05D005168 2.8e-46 190.3 120 70.0
Aa31LG6G160 Aethionema arabicum HOM05D004377 ORTHO05D005168 9.0e-45 185.3 273 45.1
AagrBONN_evm.TU.Sc2ySwM_362.367 Anthoceros agrestis HOM05D004377 ORTHO05D005168 3.4e-44 183.3 157 56.7
Mapoly0006s0223 Marchantia polymorpha HOM05D004377 ORTHO05D005168 1.4e-42 177.9 156 57.7
TAR374G0316 Trochodendron aralioides HOM05D004377 ORTHO05D005168 9.3e-42 175.3 122 71.3
Hund14575 Selenicereus undatus HOM05D004377 ORTHO05D005168 2.4e-37 160.6 159 55.3
MBI09_g24445_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 4.6e-33 146.4 155 49.0
FAN24G1967 Fragaria x ananassa HOM05D004377 ORTHO05D005168 7.4e-31 139.0 283 37.8
GSVIVG01015047001 Vitis vinifera HOM05D004377 ORTHO05D005168 3.4e-28 130.2 85 70.6
FvH4_2g20120 Fragaria vesca HOM05D004377 ORTHO05D005168 4.2e-26 123.2 278 37.4
MCO15G334 Micromonas commoda HOM05D004377 ORTHO05D005168 7.9e-25 119.0 217 33.6
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.3e-22 111.7 183 42.1
SEGI_12924 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 2.8e-22 110.5 120 49.2
MBI09_g42042_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 1.8e-21 107.8 164 42.7
Nitab4.5_0002372g0030 Nicotiana tabacum HOM05D004377 ORTHO05D005168 3.4e-20 103.6 63 82.5
SEGI_18353 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 3.8e-19 100.1 94 55.3
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.2e-11 74.3 109 46.8
Actinidia31513 Actinidia chinensis HOM05D004377 ORTHO05D005168 4.8e-06 56.6 34 79.4


User provided reference genes

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