Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0026900 Salix brachista HOM05D000226 ORTHO05D000142 4.3e-65 251.1 124 100.0
Potri.003G052400 Populus trichocarpa HOM05D000226 ORTHO05D000142 1.4e-31 139.8 73 93.2
Potri.001G184100 Populus trichocarpa HOM05D000226 ORTHO05D000142 1.3e-29 133.3 73 87.7
Gohir.A05G132500 Gossypium hirsutum HOM05D000226 ORTHO05D000142 3.8e-29 131.7 79 81.0
Gohir.D05G131400 Gossypium hirsutum HOM05D000226 ORTHO05D000142 3.8e-29 131.7 79 81.0
Eucgr.F03040 Eucalyptus grandis HOM05D000226 ORTHO05D000142 5.0e-29 131.3 78 80.8
COL.COLO4_30436 Corchorus olitorius HOM05D000226 ORTHO05D000142 8.5e-29 130.6 79 79.7
Manes.11G037800 Manihot esculenta HOM05D000226 ORTHO05D000142 1.1e-28 130.2 77 80.5
GSVIVG01017073001 Vitis vinifera HOM05D000226 ORTHO05D000142 1.5e-28 129.8 80 80.0
Duzib235G0828 Durio zibethinus HOM05D000226 ORTHO05D000142 2.5e-28 129.0 79 79.7
Rhsim12G0200200 Rhododendron simsii HOM05D000226 ORTHO05D000142 2.5e-28 129.0 80 76.2
Gorai.009G135100 Gossypium raimondii HOM05D000226 ORTHO05D000142 3.2e-28 128.6 79 79.7
Duzib160G0329 Durio zibethinus HOM05D000226 ORTHO05D000142 5.5e-28 127.9 80 80.0
MD09G1209300 Malus domestica HOM05D000226 ORTHO05D000142 5.5e-28 127.9 80 78.8
TWI12G0299 Tripterygium wilfordii HOM05D000226 ORTHO05D000142 5.5e-28 127.9 77 80.5
Actinidia08992 Actinidia chinensis HOM05D000226 ORTHO05D000142 7.2e-28 127.5 82 74.4
QL05p021649 Quercus lobata HOM05D000226 ORTHO05D000142 7.2e-28 127.5 78 78.2
vmacro16970 Vaccinium macrocarpon HOM05D000226 ORTHO05D000142 7.2e-28 127.5 80 75.0
Ciclev10024950m.g Citrus clementina HOM05D000226 ORTHO05D000142 2.1e-27 125.9 79 77.2
TWI75G1648 Tripterygium wilfordii HOM05D000226 ORTHO05D000142 2.1e-27 125.9 77 80.5
CiPaw.01G235700 Carya illinoinensis HOM05D000226 ORTHO05D000142 2.7e-27 125.6 78 78.2
Glyma.13G357100 Glycine max HOM05D000226 ORTHO05D000142 2.7e-27 125.6 78 76.9
Glyma.15G016500 Glycine max HOM05D000226 ORTHO05D000142 3.6e-27 125.2 78 76.9
MD17G1191000 Malus domestica HOM05D000226 ORTHO05D000142 4.7e-27 124.8 80 76.2
Prupe.3G067200 Prunus persica HOM05D000226 ORTHO05D000142 1.8e-26 122.9 80 76.2
Cpa.g.sc98.6 Carica papaya HOM05D000226 ORTHO05D000142 2.3e-26 122.5 77 74.0
Phvul.005G168900 Phaseolus vulgaris HOM05D000226 ORTHO05D000142 2.3e-26 122.5 78 74.4
VMungo1080G1883 Vigna mungo HOM05D000226 ORTHO05D000142 4.0e-26 121.7 78 73.1
Thecc.06G092500 Theobroma cacao HOM05D000226 ORTHO05D000142 1.1e-25 120.2 72 80.6
TAR383G0162 Trochodendron aralioides HOM05D000226 ORTHO05D000142 1.5e-25 119.8 80 71.2
Dinv38020 Davidia involucrata HOM05D000226 ORTHO05D000142 3.3e-25 118.6 80 70.0
Manes.04G130100 Manihot esculenta HOM05D000226 ORTHO05D000142 4.4e-25 118.2 70 78.6
Lj3g0010793 Lotus japonicus HOM05D000226 ORTHO05D000142 7.5e-25 117.5 79 74.7
CSS0041258 Camellia sinensis var. sinensis HOM05D000226 ORTHO05D000142 9.7e-25 117.1 81 71.6
FvH4_6g31780 Fragaria vesca HOM05D000226 ORTHO05D000142 9.7e-25 117.1 80 73.8
FAN02G2430 Fragaria x ananassa HOM05D000226 ORTHO05D000142 9.7e-25 117.1 80 73.8
FAN05G0292 Fragaria x ananassa HOM05D000226 ORTHO05D000142 9.7e-25 117.1 80 73.8
FAN14G2210 Fragaria x ananassa HOM05D000226 ORTHO05D000142 9.7e-25 117.1 80 73.8
SHI10994 Sapria himalayana HOM05D000226 ORTHO05D000142 9.7e-25 117.1 77 71.4
Haze_16362 Corylus avellana HOM05D000226 ORTHO05D000142 1.3e-24 116.7 79 70.9
Dinv30481 Davidia involucrata HOM05D000226 ORTHO05D000142 1.3e-24 116.7 80 71.2
Solyc03g120620.3 Solanum lycopersicum HOM05D000226 ORTHO05D000142 2.2e-24 115.9 81 66.7
Sopen00g014190 Solanum pennellii HOM05D000226 ORTHO05D000142 2.2e-24 115.9 81 66.7
CANSAT56G4543 Cannabis sativa HOM05D000226 ORTHO05D000142 2.8e-24 115.5 78 73.1
RcHm_v2.0_Chr2g0138951 Rosa chinensis HOM05D000226 ORTHO05D000142 3.7e-24 115.2 80 72.5
PGSC0003DMG400002627 Solanum tuberosum HOM05D000226 ORTHO05D000142 3.7e-24 115.2 81 66.7
Cfa002096 Carpinus fangiana HOM05D000226 ORTHO05D000142 4.8e-24 114.8 79 70.9
CiPaw.02G148700 Carya illinoinensis HOM05D000226 ORTHO05D000142 6.3e-24 114.4 78 71.8
FAN09G3444 Fragaria x ananassa HOM05D000226 ORTHO05D000142 6.3e-24 114.4 80 71.2
Nitab4.5_0007217g0030 Nicotiana tabacum HOM05D000226 ORTHO05D000142 6.3e-24 114.4 80 66.2
CAN.G438.29 Capsicum annuum HOM05D000226 ORTHO05D000142 1.1e-23 113.6 81 66.7
Nn2g11691 Nelumbo nucifera HOM05D000226 ORTHO05D000142 2.4e-23 112.5 80 63.8
Lj5C58G2 Lonicera japonica HOM05D000226 ORTHO05D000142 3.1e-23 112.1 82 68.3
Hma1.2p1_1195F.1_g265810 Hydrangea macrophylla HOM05D000226 ORTHO05D000142 4.1e-23 111.7 80 70.0
Hma1.2p1_3147F.1_g333170 Hydrangea macrophylla HOM05D000226 ORTHO05D000142 4.1e-23 111.7 80 70.0
PGR102G0370 Punica granatum HOM05D000226 ORTHO05D000142 4.1e-23 111.7 74 71.6
Cc04_g03030 Coffea canephora HOM05D000226 ORTHO05D000142 5.3e-23 111.3 80 65.0
Nn3g18079 Nelumbo nucifera HOM05D000226 ORTHO05D000142 5.3e-23 111.3 75 70.7
AUR62011663 Chenopodium quinoa HOM05D000226 ORTHO05D000142 1.6e-22 109.8 80 62.5
AUR62016486 Chenopodium quinoa HOM05D000226 ORTHO05D000142 1.6e-22 109.8 80 62.5
Psat5g297800 Pisum sativum HOM05D000226 ORTHO05D000142 1.6e-22 109.8 81 67.9
Ca_01134_v3 Cicer arietinum L. HOM05D000226 ORTHO05D000142 2.0e-22 109.4 78 66.7
EL10Ac9g22031 Beta vulgaris HOM05D000226 ORTHO05D000142 2.7e-22 109.0 80 65.0
MBI01_g15705_MAGBIO Magnolia biondii HOM05D000226 ORTHO05D000142 1.3e-21 106.7 82 67.1
Aqoxy7G01597 Aquilegia oxysepala HOM05D000226 ORTHO05D000142 1.7e-21 106.3 80 65.0
Hund00641 Selenicereus undatus HOM05D000226 ORTHO05D000142 2.9e-21 105.5 81 64.2
Medtr2g101720 Medicago truncatula HOM05D000226 ORTHO05D000142 6.5e-21 104.4 79 64.6
TPR.G37164 Trifolium pratense HOM05D000226 ORTHO05D000142 6.5e-21 104.4 79 65.8
VMungo0331G0130 Vigna mungo HOM05D000226 ORTHO05D000142 6.5e-21 104.4 77 63.6
PSO210G7292 Papaver somniferum HOM05D000226 ORTHO05D000142 8.5e-21 104.0 80 62.5
Glyma.07G019500 Glycine max HOM05D000226 ORTHO05D000142 1.9e-20 102.8 81 63.0
arahy.Tifrunner.gnm1.ann1.BYTU3P Arachis hypogaea HOM05D000226 ORTHO05D000142 2.5e-20 102.4 86 57.0
arahy.Tifrunner.gnm1.ann1.IRYC8E Arachis hypogaea HOM05D000226 ORTHO05D000142 2.5e-20 102.4 86 57.0
Peaxi162Scf00015g00043 Petunia axillaris HOM05D000226 ORTHO05D000142 2.5e-20 102.4 76 61.8
PSO210G6260 Papaver somniferum HOM05D000226 ORTHO05D000142 4.2e-20 101.7 81 59.3
Lalb_Chr14g0373211 Lupinus albus HOM05D000226 ORTHO05D000142 5.5e-20 101.3 77 63.6
Phvul.010G148700 Phaseolus vulgaris HOM05D000226 ORTHO05D000142 5.5e-20 101.3 77 62.3
Glyma.08G204700 Glycine max HOM05D000226 ORTHO05D000142 1.6e-19 99.8 80 62.5
ECA232G1585 Erigeron canadensis HOM05D003521 ORTHO05D000142 2.7e-19 99.0 79 63.3
MELO3C012973.2 Cucumis melo HOM05D000226 ORTHO05D000142 4.7e-19 98.2 81 61.7
Sc12g0009470 Simmondsia chinensis HOM05D000226 ORTHO05D000142 6.1e-19 97.8 80 52.5
Lsat_1_v5_gn_4_102880 Lactuca sativa HOM05D000226 ORTHO05D000142 1.0e-18 97.1 79 60.8
Nitab4.5_0001315g0160 Nicotiana tabacum HOM05D000226 ORTHO05D000142 1.4e-18 96.7 83 57.8
Nitab4.5_0000351g0080 Nicotiana tabacum HOM05D000226 ORTHO05D000142 1.8e-18 96.3 78 59.0
arahy.Tifrunner.gnm1.ann1.82QS9R Arachis hypogaea HOM05D000226 ORTHO05D000142 3.0e-18 95.5 84 61.9
arahy.Tifrunner.gnm1.ann1.71NB6R Arachis hypogaea HOM05D000226 ORTHO05D000142 4.0e-18 95.1 84 60.7
CsaV3_3G024970 Cucumis sativus L. HOM05D000226 ORTHO05D000142 5.2e-18 94.7 81 59.3
DCAR_016210 Daucus carota HOM05D000226 ORTHO05D000142 6.8e-18 94.4 77 63.6
MSTRG.11052 Avicennia marina HOM05D000226 ORTHO05D000142 8.8e-18 94.0 81 60.5
Oeu033508.1 Olea europaea HOM05D000226 ORTHO05D000142 3.4e-17 92.0 79 58.2
HanXRQChr09g0275141 Helianthus annuus HOM05D000226 ORTHO05D000142 4.4e-17 91.7 72 56.9
HanXRQChr16g0500871 Helianthus annuus HOM05D000226 ORTHO05D000142 4.4e-17 91.7 81 55.6
Sed0011596 Sechium edule HOM05D000226 ORTHO05D000142 7.5e-17 90.9 101 51.5
SGA_v2.0_scaffold5G02554 Striga asiatica HOM05D000226 ORTHO05D000142 2.8e-16 89.0 80 53.8
DCAR_026333 Daucus carota HOM05D000226 ORTHO05D000142 3.7e-16 88.6 100 50.0
THA.LOC104800418 Tarenaya hassleriana HOM05D000226 ORTHO05D000142 3.7e-16 88.6 84 57.1
A07p26360 Brassica napus HOM05D000226 ORTHO05D000142 6.3e-16 87.8 78 56.4
BraA07t30280Z Brassica rapa HOM05D000226 ORTHO05D000142 6.3e-16 87.8 78 56.4
CARHR074650 Cardamine hirsuta HOM05D000226 ORTHO05D000142 6.3e-16 87.8 74 60.8
Aa31LG4G120 Aethionema arabicum HOM05D000226 ORTHO05D000142 8.3e-16 87.4 84 53.6
AT1G79840 Arabidopsis thaliana HOM05D000226 ORTHO05D000142 8.3e-16 87.4 74 59.5
Carub.0002s2766 Capsella rubella HOM05D000226 ORTHO05D000142 1.4e-15 86.7 74 59.5
CDE05G2243 Ceratophyllum demersum HOM05D000226 ORTHO05D000142 1.8e-15 86.3 80 51.2
CDE05G3451 Ceratophyllum demersum HOM05D000682 ORTHO05D000510 1.8e-15 86.3 80 52.5
BcaC08g45271 Brassica carinata HOM05D000226 ORTHO05D000142 2.4e-15 85.9 78 55.1
C06p28750 Brassica napus HOM05D000226 ORTHO05D000142 2.4e-15 85.9 78 55.1
BolC6t38045H Brassica oleracea HOM05D000226 ORTHO05D000142 2.4e-15 85.9 78 55.1
Migut.I00940 Erythranthe guttata HOM05D000226 ORTHO05D000142 3.5e-14 82.0 83 53.0
ATR0315G030 Amborella trichopoda HOM05D000226 ORTHO05D000142 4.5e-14 81.6 82 53.7
Sp5g35920 Schrenkiella parvula HOM05D000226 ORTHO05D000142 1.0e-13 80.5 74 54.1
Thhalv10018234m.g Eutrema salsugineum HOM05D000226 ORTHO05D000142 2.2e-13 79.3 73 52.1
DCAR_007570 Daucus carota HOM05D000226 ORTHO05D000142 5.0e-13 78.2 74 58.1
SalBow2G1175 Salvia bowleyana HOM05D000226 ORTHO05D000142 6.5e-13 77.8 78 50.0
DCAR_026332 Daucus carota HOM05D000226 ORTHO05D000142 3.2e-12 75.5 82 48.8
Sed0004043 Sechium edule HOM05D000226 ORTHO05D000142 4.0e-10 68.6 77 45.5
ClCG09G001930 Citrullus lanatus HOM05D000226 ORTHO05D000142 8.8e-10 67.4 78 43.6
MELO3C024256.2 Cucumis melo HOM05D000226 ORTHO05D000142 1.2e-09 67.0 77 42.9
CsaV3_7G033410 Cucumis sativus L. HOM05D000226 ORTHO05D000142 2.0e-09 66.2 78 43.6
Os01g0760800 Oryza sativa ssp. japonica HOM05D000226 ORTHO05D000142 6.3e-08 61.2 91 40.7


User provided reference genes

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