Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra03G0005200 Salix brachista HOM05D004854 ORTHO05D005854 1.3e-73 279.6 144 100.0
Potri.003G010200 Populus trichocarpa HOM05D004854 ORTHO05D005854 3.0e-25 119.0 70 88.6
Potri.009G032600 Populus trichocarpa HOM05D004854 ORTHO05D005854 1.5e-24 116.7 70 84.3
Sabra09G0023200 Salix brachista HOM05D004854 ORTHO05D005854 1.1e-22 110.5 67 83.6
Manes.06G021300 Manihot esculenta HOM05D004854 ORTHO05D005854 1.8e-22 109.8 69 78.3
MSTRG.26532 Avicennia marina HOM05D004854 ORTHO05D005854 2.0e-21 106.3 70 77.1
Rhsim01G0120500 Rhododendron simsii HOM05D004854 ORTHO05D005854 7.6e-21 104.4 67 80.6
CANSAT11G1984 Cannabis sativa HOM05D004854 ORTHO05D005854 1.3e-20 103.6 70 78.6
SGA_v2.0_scaffold21G09635 Striga asiatica HOM05D004854 ORTHO05D005854 1.3e-20 103.6 70 74.3
Dinv26446 Davidia involucrata HOM05D004854 ORTHO05D005854 1.7e-20 103.2 69 76.8
vmacro20836 Vaccinium macrocarpon HOM05D004854 ORTHO05D005854 1.7e-20 103.2 70 74.3
Eucgr.A01410 Eucalyptus grandis HOM05D004854 ORTHO05D005854 2.2e-20 102.8 67 82.1
Eucgr.C02261 Eucalyptus grandis HOM05D004854 ORTHO05D005854 2.2e-20 102.8 67 80.6
Eucgr.C02263 Eucalyptus grandis HOM05D004854 ORTHO05D005854 2.2e-20 102.8 67 80.6
MSTRG.19386 Avicennia marina HOM05D004854 ORTHO05D005854 3.8e-20 102.1 78 69.2
PGR044G2628 Punica granatum HOM05D004854 ORTHO05D005854 3.8e-20 102.1 69 76.8
PGR109G0004 Punica granatum HOM05D004854 ORTHO05D005854 3.8e-20 102.1 69 76.8
CSS0022850 Camellia sinensis var. sinensis HOM05D004854 ORTHO05D005854 4.9e-20 101.7 67 77.6
Migut.J00819 Erythranthe guttata HOM05D004854 ORTHO05D005854 4.9e-20 101.7 70 72.9
Peaxi162Scf00324g00719 Petunia axillaris HOM05D004854 ORTHO05D005854 4.9e-20 101.7 69 75.4
SGA_v2.0_scaffold41G15867 Striga asiatica HOM05D004854 ORTHO05D005854 4.9e-20 101.7 70 72.9
Dinv25401 Davidia involucrata HOM05D004854 ORTHO05D005854 6.4e-20 101.3 70 72.9
Oeu044703.1 Olea europaea HOM05D004854 ORTHO05D005854 6.4e-20 101.3 69 76.8
Ciclev10002863m.g Citrus clementina HOM05D004854 ORTHO05D005854 8.4e-20 100.9 70 70.0
Oeu044701.1 Olea europaea HOM05D004854 ORTHO05D005854 8.4e-20 100.9 70 74.3
QL11p004841 Quercus lobata HOM05D004854 ORTHO05D005854 8.4e-20 100.9 70 72.9
Sed0005886 Sechium edule HOM05D004854 ORTHO05D005854 8.4e-20 100.9 70 72.9
Nitab4.5_0000074g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 1.1e-19 100.5 69 73.9
Nitab4.5_0012849g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 1.1e-19 100.5 69 73.9
Oeu064534.1 Olea europaea HOM05D004854 ORTHO05D005854 1.1e-19 100.5 70 72.9
BolC9t57762H Brassica oleracea HOM05D004854 ORTHO05D005854 1.4e-19 100.1 69 75.4
BraA10t43555Z Brassica rapa HOM05D004854 ORTHO05D005854 1.4e-19 100.1 69 75.4
A10p14720 Brassica napus HOM05D004854 ORTHO05D005854 1.9e-19 99.8 69 75.4
CDE05G0266 Ceratophyllum demersum HOM05D000177 ORTHO05D008165 1.9e-19 99.8 67 79.1
CDE05G2165 Ceratophyllum demersum HOM05D004854 ORTHO05D005854 1.9e-19 99.8 67 79.1
Oeu000974.1 Olea europaea HOM05D004854 ORTHO05D005854 1.9e-19 99.8 70 71.4
C02p14390 Brassica napus HOM05D004854 ORTHO05D005854 2.4e-19 99.4 69 73.9
BolC2t07563H Brassica oleracea HOM05D004854 ORTHO05D005854 2.4e-19 99.4 69 73.9
CAN.G86.2 Capsicum annuum HOM05D004854 ORTHO05D005854 2.4e-19 99.4 69 72.5
Sed0001835 Sechium edule HOM05D004854 ORTHO05D005854 2.4e-19 99.4 70 72.9
THA.LOC104813509 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 2.4e-19 99.4 70 74.3
Atru.chr12.1305 Acer truncatum HOM05D004854 ORTHO05D005854 3.2e-19 99.0 70 70.0
CsaV3_2G008580 Cucumis sativus L. HOM05D004854 ORTHO05D005854 3.2e-19 99.0 70 72.9
DCAR_003035 Daucus carota HOM05D004854 ORTHO05D005854 4.2e-19 98.6 70 68.6
Sc26g0002890 Simmondsia chinensis HOM05D004854 ORTHO05D005854 4.2e-19 98.6 70 68.6
GSVIVG01010910001 Vitis vinifera HOM05D004854 ORTHO05D005854 4.2e-19 98.6 67 76.1
Actinidia39348 Actinidia chinensis HOM05D000406 ORTHO05D003425 5.4e-19 98.2 67 74.6
PGSC0003DMG400008513 Solanum tuberosum HOM05D004854 ORTHO05D005854 5.4e-19 98.2 69 71.0
C09p49130 Brassica napus HOM05D004854 ORTHO05D005854 7.1e-19 97.8 69 73.9
MELO3C003999.2 Cucumis melo HOM05D004854 ORTHO05D005854 7.1e-19 97.8 70 71.4
AL8G33260 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 9.3e-19 97.4 70 71.4
BcaC04g19981 Brassica carinata HOM05D004854 ORTHO05D005854 9.3e-19 97.4 70 71.4
Actinidia29956 Actinidia chinensis HOM05D004854 ORTHO05D005854 1.2e-18 97.1 70 70.0
A02p08620 Brassica napus HOM05D004854 ORTHO05D005854 1.2e-18 97.1 70 71.4
BcaC03g14166 Brassica carinata HOM05D004854 ORTHO05D005854 1.6e-18 96.7 70 70.0
CiPaw.08G034100 Carya illinoinensis HOM05D004854 ORTHO05D005854 1.6e-18 96.7 70 71.4
Solyc07g009330.4 Solanum lycopersicum HOM05D004854 ORTHO05D005854 1.6e-18 96.7 69 69.6
ClCG11G011930 Citrullus lanatus HOM05D004854 ORTHO05D005854 2.1e-18 96.3 70 71.4
Dinv25400 Davidia involucrata HOM05D004854 ORTHO05D005854 2.1e-18 96.3 67 71.6
TWI38G2070 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 2.1e-18 96.3 70 70.0
TAR625G0051 Trochodendron aralioides HOM05D004854 ORTHO05D005854 2.1e-18 96.3 67 73.1
BraA02t05931Z Brassica rapa HOM05D004854 ORTHO05D005854 2.7e-18 95.9 70 70.0
Cfa013427 Carpinus fangiana HOM05D004854 ORTHO05D005854 2.7e-18 95.9 67 73.1
BcaB05g22334 Brassica carinata HOM05D004854 ORTHO05D005854 3.5e-18 95.5 70 70.0
MBI13_g31550_MAGBIO Magnolia biondii HOM05D004854 ORTHO05D005854 3.5e-18 95.5 69 69.6
Sp6g19020 Schrenkiella parvula HOM05D004854 ORTHO05D005854 3.5e-18 95.5 70 71.4
TWI18G0069 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 3.5e-18 95.5 70 70.0
Sopen07g005080 Solanum pennellii HOM05D004854 ORTHO05D005854 4.6e-18 95.1 69 68.1
HanXRQChr10g0297881 Helianthus annuus HOM05D004854 ORTHO05D005854 7.8e-18 94.4 70 68.6
Cpa.g.sc95.32 Carica papaya HOM05D004854 ORTHO05D005854 1.0e-17 94.0 70 70.0
SalBow5G3614 Salvia bowleyana HOM05D004854 ORTHO05D005854 1.0e-17 94.0 70 71.4
Sp7g23910 Schrenkiella parvula HOM05D004854 ORTHO05D005854 1.0e-17 94.0 70 71.4
Gohir.A05G003400 Gossypium hirsutum HOM05D004854 ORTHO05D005854 1.3e-17 93.6 70 68.6
Gohir.D05G003800 Gossypium hirsutum HOM05D004854 ORTHO05D005854 1.3e-17 93.6 70 68.6
Gorai.009G003400 Gossypium raimondii HOM05D004854 ORTHO05D005854 1.3e-17 93.6 70 68.6
AL7G27120 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 1.7e-17 93.2 70 68.6
AT5G57290 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 1.7e-17 93.2 66 72.7
THA.LOC104811780 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 2.3e-17 92.8 70 68.6
arahy.Tifrunner.gnm1.ann1.9B8HPN Arachis hypogaea HOM05D004854 ORTHO05D005854 3.0e-17 92.4 70 72.9
arahy.Tifrunner.gnm1.ann1.P9UE85 Arachis hypogaea HOM05D004854 ORTHO05D005854 3.0e-17 92.4 70 72.9
Thhalv10026301m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 3.0e-17 92.4 70 70.0
Glyma.08G131500 Glycine max HOM05D004854 ORTHO05D005854 3.0e-17 92.4 70 71.4
PGR142G3975 Punica granatum HOM05D004854 ORTHO05D005854 3.0e-17 92.4 70 65.7
TWI38G1790 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 3.0e-17 92.4 70 67.1
Ah.05g168230 Amaranthus hybridus HOM05D004854 ORTHO05D005854 3.9e-17 92.0 70 67.1
Ah.16g108570 Amaranthus hybridus HOM05D004854 ORTHO05D005854 6.6e-17 91.3 70 67.1
CARHR271090 Cardamine hirsuta HOM05D004854 ORTHO05D005854 6.6e-17 91.3 70 68.6
AUR62034880 Chenopodium quinoa HOM05D004854 ORTHO05D005854 6.6e-17 91.3 70 67.1
MD13G1245200 Malus domestica HOM05D004854 ORTHO05D005854 6.6e-17 91.3 69 69.6
MD16G1253100 Malus domestica HOM05D004854 ORTHO05D005854 6.6e-17 91.3 70 70.0
ECA247G3496 Erigeron canadensis HOM05D004854 ORTHO05D005854 8.7e-17 90.9 70 65.7
Glyma.05G174300 Glycine max HOM05D004854 ORTHO05D005854 8.7e-17 90.9 70 70.0
Prupe.1G079500 Prunus persica HOM05D004854 ORTHO05D005854 8.7e-17 90.9 70 68.6
ATR0626G247 Amborella trichopoda HOM05D004854 ORTHO05D005854 1.1e-16 90.5 63 77.8
AUR62026626 Chenopodium quinoa HOM05D004854 ORTHO05D005854 1.1e-16 90.5 70 67.1
Duzib150G0904 Durio zibethinus HOM05D004854 ORTHO05D005854 1.1e-16 90.5 69 68.1
Migut.L01900 Erythranthe guttata HOM05D004854 ORTHO05D005854 1.1e-16 90.5 62 72.6
TAR636G3485 Trochodendron aralioides HOM05D004854 ORTHO05D005854 1.1e-16 90.5 61 73.8
AT4G25890 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 1.5e-16 90.1 70 65.7
CARHR233360 Cardamine hirsuta HOM05D004854 ORTHO05D005854 1.5e-16 90.1 70 68.6
Cc06_g22110 Coffea canephora HOM05D004854 ORTHO05D005854 1.5e-16 90.1 69 66.7
Lsat_1_v5_gn_9_31040 Lactuca sativa HOM05D004854 ORTHO05D005854 1.5e-16 90.1 70 64.3
PSO423G0276 Papaver somniferum HOM05D004854 ORTHO05D005854 1.5e-16 90.1 70 64.3
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 1.5e-16 90.1 67 70.1
Psat7g058720 Pisum sativum HOM05D004854 ORTHO05D005854 1.9e-16 89.7 70 68.6
unitig_899.g15189 Utricularia gibba HOM05D004854 ORTHO05D005854 1.9e-16 89.7 70 65.7
arahy.Tifrunner.gnm1.ann1.AP25S4 Arachis hypogaea HOM05D004854 ORTHO05D005854 2.5e-16 89.4 70 70.0
Ca_17781_v3 Cicer arietinum L. HOM05D004854 ORTHO05D005854 2.5e-16 89.4 70 67.1
Thhalv10015037m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 2.5e-16 89.4 70 65.7
PSO596G0050 Papaver somniferum HOM05D004854 ORTHO05D005854 2.5e-16 89.4 70 64.3
SEGI_03932 Sequoiadendron giganteum HOM05D004854 ORTHO05D005854 2.5e-16 89.4 70 62.9
Carub.0008s1780 Capsella rubella HOM05D004854 ORTHO05D005854 3.3e-16 89.0 70 64.3
arahy.Tifrunner.gnm1.ann1.XNR1AK Arachis hypogaea HOM05D004854 ORTHO05D005854 4.3e-16 88.6 70 68.6
Phvul.002G259300 Phaseolus vulgaris HOM05D004854 ORTHO05D005854 4.3e-16 88.6 70 65.7
Aa31LG3G13170 Aethionema arabicum HOM05D004854 ORTHO05D005854 7.3e-16 87.8 70 64.3
Carub.0007s1506 Capsella rubella HOM05D004854 ORTHO05D005854 7.3e-16 87.8 70 67.1
VMungo0251G0447 Vigna mungo HOM05D004854 ORTHO05D005854 7.3e-16 87.8 70 64.3
Lalb_Chr07g0185421 Lupinus albus HOM05D004854 ORTHO05D005854 9.6e-16 87.4 66 72.7
Os01g0231700 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 9.6e-16 87.4 70 62.9
FvH4_4g07630 Fragaria vesca HOM05D004854 ORTHO05D005854 1.3e-15 87.0 67 68.7
FAN07G2001 Fragaria x ananassa HOM05D004854 ORTHO05D005854 1.3e-15 87.0 67 68.7
FAN12G2445 Fragaria x ananassa HOM05D004854 ORTHO05D005854 1.3e-15 87.0 67 68.7
FAN17G2475 Fragaria x ananassa HOM05D004854 ORTHO05D005854 1.3e-15 87.0 67 68.7
Lj4g0022898 Lotus japonicus HOM05D004854 ORTHO05D005854 1.3e-15 87.0 70 67.1
Medtr8g089790 Medicago truncatula HOM05D004854 ORTHO05D005854 1.3e-15 87.0 70 65.7
arahy.Tifrunner.gnm1.ann1.P39ID1 Arachis hypogaea HOM05D004854 ORTHO05D005854 1.6e-15 86.7 70 68.6
FAN22G0664 Fragaria x ananassa HOM05D004854 ORTHO05D005854 2.8e-15 85.9 70 64.3
Os06g0701400 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 2.8e-15 85.9 70 61.4
Hund26676 Selenicereus undatus HOM05D004854 ORTHO05D005854 2.8e-15 85.9 70 58.6
TPR.G6298 Trifolium pratense HOM05D004854 ORTHO05D005854 2.8e-15 85.9 66 69.7
Thecc.09G180300 Theobroma cacao HOM05D004854 ORTHO05D005854 4.8e-15 85.1 70 60.0
Lj6g0003516 Lotus japonicus HOM05D004854 ORTHO05D005854 8.1e-15 84.3 70 62.9
RcHm_v2.0_Chr4g0400241 Rosa chinensis HOM05D004854 ORTHO05D005854 1.1e-14 84.0 67 67.2
Zm00001eb226990 Zea mays HOM05D004854 ORTHO05D005854 1.4e-14 83.6 70 62.9
arahy.Tifrunner.gnm1.ann1.90PU0B Arachis hypogaea HOM05D004854 ORTHO05D005854 2.4e-14 82.8 70 64.3
Lalb_Chr13g0295841 Lupinus albus HOM05D004854 ORTHO05D005854 3.1e-14 82.4 70 64.3
Zm00001eb272850 Zea mays HOM05D004854 ORTHO05D005854 4.0e-14 82.0 70 65.7
BcaB08g36089 Brassica carinata HOM05D004854 ORTHO05D005854 6.9e-14 81.3 67 62.7
PSO596G0067 Papaver somniferum HOM05D004854 ORTHO05D005854 1.2e-13 80.5 67 62.7
RcHm_v2.0_Chr1g0341131 Rosa chinensis HOM05D004854 ORTHO05D005854 2.6e-13 79.3 67 64.2
PSO423G0052 Papaver somniferum HOM05D004854 ORTHO05D005854 5.8e-13 78.2 67 61.2
Thecc.01G294400 Theobroma cacao HOM05D004854 ORTHO05D005854 7.6e-13 77.8 92 45.7
SGA_v2.0_scaffold46G17340 Striga asiatica HOM05D004854 ORTHO05D005854 2.2e-12 76.3 70 58.6
Nn2g12744 Nelumbo nucifera HOM05D004854 ORTHO05D005854 4.9e-12 75.1 47 78.7
HPP92_026146 Vanilla planifolia HOM05D003573 ORTHO05D004204 7.1e-11 71.2 66 54.5
Pp3c22_2920 Physcomitrium patens HOM05D004854 ORTHO05D005854 3.5e-10 68.9 71 52.1
Pp3c21_16160 Physcomitrium patens HOM05D004854 ORTHO05D005854 1.8e-09 66.6 71 50.7
arahy.Tifrunner.gnm1.ann1.63P7R9 Arachis hypogaea HOM05D000970 ORTHO05D000788 3.0e-09 65.9 48 72.9
BolC3t13948H Brassica oleracea HOM05D004854 ORTHO05D005854 6.7e-09 64.7 54 68.5
C03p15060 Brassica napus HOM05D004854 ORTHO05D005854 1.5e-08 63.5 54 66.7
Duzib170G0267 Durio zibethinus HOM05D004854 ORTHO05D005854 1.9e-08 63.2 43 69.8
Mapoly0006s0174 Marchantia polymorpha HOM05D004854 ORTHO05D005854 1.9e-08 63.2 71 45.1
SMO172G0233 Selaginella moellendorffii HOM05D004854 ORTHO05D005854 2.5e-08 62.8 70 45.7
COL.COLO4_25466 Corchorus olitorius HOM05D004854 ORTHO05D005854 3.7e-07 58.9 43 65.1
Duzib168G1583 Durio zibethinus HOM05D004854 ORTHO05D005854 6.2e-07 58.2 47 59.6


User provided reference genes

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