Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0191900 Salix brachista HOM05D006778 ORTHO05D008341 2.4e-69 265.4 134 100.0
Potri.002G252700 Populus trichocarpa HOM05D006778 ORTHO05D008341 3.0e-64 248.4 134 94.0
Manes.12G043800 Manihot esculenta HOM05D006778 ORTHO05D008341 1.6e-44 183.0 134 71.6
MD05G1182200 Malus domestica HOM05D006778 ORTHO05D008341 4.7e-41 171.4 132 65.2
Prupe.8G209000 Prunus persica HOM05D006778 ORTHO05D008341 3.0e-40 168.7 135 65.2
FAN15G2222 Fragaria x ananassa HOM05D006778 ORTHO05D008341 1.3e-38 163.3 131 64.9
FvH4_2g19780 Fragaria vesca HOM05D006778 ORTHO05D008341 1.1e-37 160.2 145 60.7
Glyma.10G042900 Glycine max HOM05D006778 ORTHO05D008341 1.4e-37 159.8 131 61.8
RcHm_v2.0_Chr6g0285481 Rosa chinensis HOM05D006778 ORTHO05D008341 2.4e-37 159.1 142 61.3
GSVIVG01028519001 Vitis vinifera HOM05D006778 ORTHO05D008341 4.1e-37 158.3 128 64.8
CiPaw.03G152900 Carya illinoinensis HOM05D006778 ORTHO05D008341 5.4e-37 157.9 131 63.4
ClCG07G001620 Citrullus lanatus HOM05D006778 ORTHO05D008341 7.0e-37 157.5 134 64.2
THA.LOC104820057 Tarenaya hassleriana HOM05D006778 ORTHO05D008341 2.7e-36 155.6 130 62.3
Actinidia37573 Actinidia chinensis HOM05D006778 ORTHO05D008341 5.9e-36 154.5 132 62.1
Lj3g0024250 Lotus japonicus HOM05D006778 ORTHO05D008341 5.9e-36 154.5 129 61.2
Rhsim13G0042100 Rhododendron simsii HOM05D006778 ORTHO05D008341 5.9e-36 154.5 129 62.0
TAR362G0656 Trochodendron aralioides HOM05D006778 ORTHO05D008341 7.8e-36 154.1 133 62.4
Sed0012724 Sechium edule HOM05D006778 ORTHO05D008341 1.0e-35 153.7 134 61.2
Cfa002523 Carpinus fangiana HOM05D006778 ORTHO05D008341 5.0e-35 151.4 128 62.5
Glyma.13G130200 Glycine max HOM05D006778 ORTHO05D008341 6.6e-35 151.0 133 57.1
CiPaw.04G108200 Carya illinoinensis HOM05D006778 ORTHO05D008341 8.6e-35 150.6 160 53.1
Lj5g0022938 Lotus japonicus HOM05D006778 ORTHO05D008341 8.6e-35 150.6 131 59.5
PGR044G1830 Punica granatum HOM05D006778 ORTHO05D008341 2.5e-34 149.1 126 59.5
MELO3C026499.2 Cucumis melo HOM05D006778 ORTHO05D008341 4.3e-34 148.3 135 62.2
CsaV3_6G036140 Cucumis sativus L. HOM05D006778 ORTHO05D008341 7.3e-34 147.5 135 62.2
vmacro02733 Vaccinium macrocarpon HOM05D006778 ORTHO05D008341 9.5e-34 147.1 161 53.4
Migut.D00505 Erythranthe guttata HOM05D006778 ORTHO05D008341 1.2e-33 146.7 137 57.7
SGA_v2.0_scaffold8G04666 Striga asiatica HOM05D006778 ORTHO05D008341 2.8e-33 145.6 128 60.2
Cpa.g.sc8.198 Carica papaya HOM05D006778 ORTHO05D008341 6.2e-33 144.4 125 58.4
FAN24G1005 Fragaria x ananassa HOM05D006778 ORTHO05D008341 6.2e-33 144.4 150 54.0
arahy.Tifrunner.gnm1.ann1.01AYHN Arachis hypogaea HOM05D006778 ORTHO05D008341 2.3e-32 142.5 131 55.0
QL07p037469 Quercus lobata HOM05D006778 ORTHO05D008341 3.1e-32 142.1 166 53.0
Cc01_g17420 Coffea canephora HOM05D006778 ORTHO05D008341 4.0e-32 141.7 132 59.8
arahy.Tifrunner.gnm1.ann1.PE83GC Arachis hypogaea HOM05D006778 ORTHO05D008341 5.2e-32 141.4 131 55.0
Sp7g26820 Schrenkiella parvula HOM05D006778 ORTHO05D008341 6.8e-32 141.0 151 53.6
Phvul.007G156300 Phaseolus vulgaris HOM05D006778 ORTHO05D008341 1.5e-31 139.8 131 58.0
Medtr1g069150 Medicago truncatula HOM05D006778 ORTHO05D008341 2.0e-31 139.4 146 52.7
Psat6g064720 Pisum sativum HOM05D006778 ORTHO05D008341 3.4e-31 138.7 145 51.7
Thecc.01G232400 Theobroma cacao HOM05D006778 ORTHO05D008341 3.4e-31 138.7 170 47.1
BcaC09g51658 Brassica carinata HOM05D006778 ORTHO05D008341 5.8e-31 137.9 151 52.3
Thhalv10026155m.g Eutrema salsugineum HOM05D006778 ORTHO05D008341 9.8e-31 137.1 157 51.6
BcaNung01362 Brassica carinata HOM05D006778 ORTHO05D008341 2.9e-30 135.6 151 53.6
CARHR236610 Cardamine hirsuta HOM05D006778 ORTHO05D008341 2.9e-30 135.6 168 50.0
PGR044G0410 Punica granatum HOM05D006778 ORTHO05D008341 2.9e-30 135.6 128 53.1
DCAR_012626 Daucus carota HOM05D006778 ORTHO05D008341 6.4e-30 134.4 147 56.5
ECA247G0226 Erigeron canadensis HOM05D000070 ORTHO05D003190 8.3e-30 134.0 128 54.7
Gohir.D08G211201 Gossypium hirsutum HOM05D006778 ORTHO05D008341 8.3e-30 134.0 159 48.4
CAN.G941.43 Capsicum annuum HOM05D006778 ORTHO05D008341 1.1e-29 133.7 140 52.9
Lalb_Chr21g0314231 Lupinus albus HOM05D006778 ORTHO05D008341 1.4e-29 133.3 133 53.4
Solyc06g008020.3 Solanum lycopersicum HOM05D006778 ORTHO05D008341 1.4e-29 133.3 138 52.2
Gorai.004G223900 Gossypium raimondii HOM05D006778 ORTHO05D008341 3.2e-29 132.1 173 44.5
CANSAT01G2408 Cannabis sativa HOM05D006778 ORTHO05D008341 5.4e-29 131.3 155 49.0
CANSAT01G3118 Cannabis sativa HOM05D006778 ORTHO05D008341 5.4e-29 131.3 155 49.0
Nn1g03098 Nelumbo nucifera HOM05D006778 ORTHO05D008341 9.2e-29 130.6 146 50.7
Nitab4.5_0003180g0010 Nicotiana tabacum HOM05D006778 ORTHO05D008341 1.2e-28 130.2 140 53.6
TPR.G33801 Trifolium pratense HOM05D006778 ORTHO05D008341 1.2e-28 130.2 145 51.7
EL10Ac7g17819 Beta vulgaris HOM05D006778 ORTHO05D008341 1.6e-28 129.8 137 51.1
COL.COLO4_28579 Corchorus olitorius HOM05D006778 ORTHO05D008341 1.6e-28 129.8 156 47.4
Nitab4.5_0001740g0070 Nicotiana tabacum HOM05D006778 ORTHO05D008341 1.6e-28 129.8 140 54.3
Carub.0007s1182 Capsella rubella HOM05D006778 ORTHO05D008341 2.7e-28 129.0 158 48.1
Duzib133G1327 Durio zibethinus HOM05D006778 ORTHO05D008341 3.5e-28 128.6 172 43.0
AUR62031811 Chenopodium quinoa HOM05D006778 ORTHO05D008341 6.0e-28 127.9 165 47.9
Gohir.A08G193200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 7.8e-28 127.5 166 42.8
AT4G28820 Arabidopsis thaliana HOM05D006778 ORTHO05D008341 1.3e-27 126.7 158 49.4
Sopen06g002860 Solanum pennellii HOM05D006778 ORTHO05D008341 1.1e-26 123.6 138 50.0
BolC1t01026H Brassica oleracea HOM05D006778 ORTHO05D008341 2.5e-26 122.5 166 45.8
A01p09090 Brassica napus HOM05D006778 ORTHO05D008341 5.6e-26 121.3 162 46.9
Pp3c19_5220 Physcomitrium patens HOM05D006778 ORTHO05D008341 5.6e-26 121.3 130 50.8
C01p10640 Brassica napus HOM05D006778 ORTHO05D008341 6.2e-25 117.9 163 45.4
ATR0787G018 Amborella trichopoda HOM05D006778 ORTHO05D008341 8.1e-25 117.5 121 52.1
Mapoly0102s0014 Marchantia polymorpha HOM05D006778 ORTHO05D008341 4.0e-24 115.2 133 48.1
Aqoxy2G03836 Aquilegia oxysepala HOM05D006778 ORTHO05D008341 6.8e-24 114.4 125 48.8
CDE06G1811 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 2.0e-23 112.8 142 46.5
TWI14G0487 Tripterygium wilfordii HOM05D006778 ORTHO05D008341 2.0e-23 112.8 186 43.0
HPP92_014070 Vanilla planifolia HOM05D006778 ORTHO05D008341 4.4e-23 111.7 128 48.4
AL7G23670 Arabidopsis lyrata HOM05D006778 ORTHO05D008341 5.8e-23 111.3 186 40.9
BraA01t00857Z Brassica rapa HOM05D006778 ORTHO05D008341 1.1e-21 107.1 163 41.7
Dinv19236 Davidia involucrata HOM05D006778 ORTHO05D008341 2.4e-21 105.9 136 47.1
CBR_g29688 Chara braunii HOM05D006778 ORTHO05D008341 5.4e-21 104.8 140 42.1
Haze_24755 Corylus avellana HOM05D006778 ORTHO05D008341 1.2e-20 103.6 94 56.4
Haze_24757 Corylus avellana HOM05D006778 ORTHO05D008341 1.2e-20 103.6 94 56.4
CSS0042066 Camellia sinensis var. sinensis HOM05D006778 ORTHO05D008341 2.7e-20 102.4 144 43.1
SMO111G0074 Selaginella moellendorffii HOM05D006778 ORTHO05D008341 4.6e-20 101.7 131 44.3
CDE07G0370 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 1.0e-19 100.5 128 47.7
MSTRG.18371 Avicennia marina HOM05D006778 ORTHO05D008341 3.9e-19 98.6 135 43.0
MD10G1170500 Malus domestica HOM05D006778 ORTHO05D008341 3.9e-19 98.6 131 45.0
AagrBONN_evm.TU.Sc2ySwM_228.3325 Anthoceros agrestis HOM05D006778 ORTHO05D008341 1.9e-18 96.3 129 43.4
Atru.chr5.1931 Acer truncatum HOM05D006778 ORTHO05D008341 4.3e-18 95.1 99 56.6
BolC7t46124H Brassica oleracea HOM05D006778 ORTHO05D008341 2.1e-17 92.8 190 34.7
Aa31LG2G21570 Aethionema arabicum HOM05D006778 ORTHO05D008341 2.8e-17 92.4 156 39.7
A03p58430 Brassica napus HOM05D006778 ORTHO05D008341 3.6e-17 92.0 187 38.0
C07p56450 Brassica napus HOM05D006778 ORTHO05D008341 1.8e-16 89.7 190 34.2
Zm00001eb149030 Zea mays HOM05D006778 ORTHO05D008341 1.8e-16 89.7 125 40.8
PGSC0003DMG400014691 Solanum tuberosum HOM05D006778 ORTHO05D008341 2.3e-16 89.4 142 47.9
Actinidia30101 Actinidia chinensis HOM05D006778 ORTHO05D008341 2.6e-15 85.9 72 65.3
AUR62008897 Chenopodium quinoa HOM05D006778 ORTHO05D008341 2.6e-15 85.9 140 42.1
AagrBONN_evm.TU.Sc2ySwM_368.1574 Anthoceros agrestis HOM05D006778 ORTHO05D008341 9.9e-15 84.0 105 46.7
VMungo0720G2677 Vigna mungo HOM05D006778 ORTHO05D008341 6.4e-14 81.3 126 41.3
Ca_09622_v3 Cicer arietinum L. HOM05D006778 ORTHO05D008341 1.4e-13 80.1 110 42.7
Hund05528 Selenicereus undatus HOM05D006778 ORTHO05D008341 1.2e-12 77.0 120 46.7
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 2.7e-12 75.9 127 40.9
Hma1.2p1_1858F.1_g305520 Hydrangea macrophylla HOM05D006778 ORTHO05D008341 6.0e-12 74.7 48 68.8
Sed0026958 Sechium edule HOM05D006778 ORTHO05D008341 1.0e-11 73.9 67 61.2
Lsat_1_v5_gn_9_11140 Lactuca sativa HOM05D006778 ORTHO05D008341 1.7e-11 73.2 108 43.5
Sc17g0002480 Simmondsia chinensis HOM05D006778 ORTHO05D008341 6.6e-11 71.2 95 45.3
Peaxi162Scf00499g00413 Petunia axillaris HOM05D006778 ORTHO05D008341 2.8e-09 65.9 81 46.9
MBI11_g20194_MAGBIO Magnolia biondii HOM05D006778 ORTHO05D008341 6.2e-09 64.7 93 45.2
PSO017G3634 Papaver somniferum HOM05D006778 ORTHO05D008341 8.1e-09 64.3 118 37.3
PSO063G2427 Papaver somniferum HOM05D006778 ORTHO05D008341 8.1e-09 64.3 99 38.4
SalBow4G2567 Salvia bowleyana HOM05D006778 ORTHO05D008341 1.8e-08 63.2 52 61.5
Gohir.A05G416601 Gossypium hirsutum HOM05D006778 ORTHO05D008341 1.2e-07 60.5 85 47.1
Gohir.A05G417001 Gossypium hirsutum HOM05D006778 ORTHO05D008341 1.2e-07 60.5 85 47.1
Gohir.D08G007200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 1.2e-07 60.5 85 47.1
Gorai.012G000200 Gossypium raimondii HOM05D006778 ORTHO05D008341 1.2e-07 60.5 85 47.1
BraA03t14903Z Brassica rapa HOM05D006778 ORTHO05D008341 3.4e-07 58.9 47 66.0
SEGI_27672 Sequoiadendron giganteum HOM05D006778 ORTHO05D008341 3.4e-07 58.9 52 63.5


User provided reference genes

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