Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0180800 Salix brachista HOM05D007245 ORTHO05D009049 4.9e-129 464.5 246 100.0
Potri.002G237200 Populus trichocarpa HOM05D007245 ORTHO05D009049 9.3e-112 407.1 307 73.9
Rhsim08G0037800 Rhododendron simsii HOM05D007245 ORTHO05D009049 2.0e-85 319.7 303 60.1
Haze_14957 Corylus avellana HOM05D007245 ORTHO05D009049 2.8e-84 315.8 308 58.4
CSS0018621 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 9.1e-83 310.8 313 57.2
Hma1.2p1_0421F.1_g149920 Hydrangea macrophylla HOM05D007245 ORTHO05D009049 9.1e-83 310.8 313 55.9
CSS0002235 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 4.5e-82 308.5 309 57.3
vmacro18400 Vaccinium macrocarpon HOM05D007245 ORTHO05D009049 1.7e-81 306.6 311 55.9
Nn3g16217 Nelumbo nucifera HOM05D007245 ORTHO05D009049 5.0e-81 305.1 301 58.1
Dinv25610 Davidia involucrata HOM05D007245 ORTHO05D009049 3.2e-80 302.4 282 60.3
Thecc.04G050800 Theobroma cacao HOM05D007245 ORTHO05D009049 3.2e-80 302.4 306 56.9
Actinidia37711 Actinidia chinensis HOM05D007245 ORTHO05D009049 2.1e-79 299.7 284 61.3
MD17G1004200 Malus domestica HOM05D007245 ORTHO05D009049 1.0e-78 297.4 313 56.5
MD09G1001100 Malus domestica HOM05D007245 ORTHO05D009049 2.3e-78 296.2 312 56.1
MELO3C014761.2 Cucumis melo HOM05D007245 ORTHO05D009049 5.2e-78 295.0 318 55.0
TAR629G1424 Trochodendron aralioides HOM05D007245 ORTHO05D009049 5.2e-78 295.0 302 57.9
Manes.11G073800 Manihot esculenta HOM05D007245 ORTHO05D009049 6.8e-78 294.7 304 57.2
Prupe.7G011800 Prunus persica HOM05D007245 ORTHO05D009049 8.8e-78 294.3 313 55.0
ClCG05G012490 Citrullus lanatus HOM05D007245 ORTHO05D009049 2.0e-77 293.1 318 55.0
Gohir.A11G062100 Gossypium hirsutum HOM05D007245 ORTHO05D009049 2.0e-77 293.1 306 54.9
Lj7P619T29 Lonicera japonica HOM05D007245 ORTHO05D009049 2.0e-77 293.1 312 56.1
HanXRQChr09g0245251 Helianthus annuus HOM05D007245 ORTHO05D009049 2.6e-77 292.7 306 54.6
Cc09_g07550 Coffea canephora HOM05D007245 ORTHO05D009049 3.4e-77 292.4 309 55.0
Lsat_1_v5_gn_2_60460 Lactuca sativa HOM05D007245 ORTHO05D009049 4.4e-77 292.0 310 54.2
Dinv33262 Davidia involucrata HOM05D007245 ORTHO05D009049 9.8e-77 290.8 277 60.3
Ciclev10016068m.g Citrus clementina HOM05D007245 ORTHO05D009049 4.8e-76 288.5 307 54.7
ECA238G1127 Erigeron canadensis HOM05D007245 ORTHO05D009049 8.3e-76 287.7 306 53.6
Atru.chr6.2722 Acer truncatum HOM05D007245 ORTHO05D009049 3.1e-75 285.8 309 53.4
FvH4_6g31080 Fragaria vesca HOM05D007245 ORTHO05D009049 5.4e-75 285.0 310 53.5
RcHm_v2.0_Chr2g0176701 Rosa chinensis HOM05D007245 ORTHO05D009049 5.4e-75 285.0 309 52.8
Duzib147G1224 Durio zibethinus HOM05D007245 ORTHO05D009049 1.2e-74 283.9 306 54.2
Sed0013025 Sechium edule HOM05D007245 ORTHO05D009049 1.2e-74 283.9 309 54.4
CsaV3_3G020030 Cucumis sativus L. HOM05D007245 ORTHO05D009049 1.6e-74 283.5 315 53.7
Duzib187G0347 Durio zibethinus HOM05D007245 ORTHO05D009049 4.5e-74 282.0 306 53.9
FAN05G2831 Fragaria x ananassa HOM05D007245 ORTHO05D009049 4.5e-74 282.0 310 53.2
Sopen05g004430 Solanum pennellii HOM05D007245 ORTHO05D009049 5.9e-74 281.6 303 54.5
Nitab4.5_0005411g0120 Nicotiana tabacum HOM05D007245 ORTHO05D009049 1.3e-73 280.4 305 55.1
CiPaw.03G000500 Carya illinoinensis HOM05D007245 ORTHO05D009049 2.2e-73 279.6 300 55.7
Peaxi162Scf00950g00032 Petunia axillaris HOM05D007245 ORTHO05D009049 2.2e-73 279.6 299 53.8
PGSC0003DMG400030518 Solanum tuberosum HOM05D007245 ORTHO05D009049 3.8e-73 278.9 305 54.1
TWI32G1326 Tripterygium wilfordii HOM05D007245 ORTHO05D009049 5.0e-73 278.5 308 55.2
Oeu045577.1 Olea europaea HOM05D007245 ORTHO05D009049 6.5e-73 278.1 307 53.4
MSTRG.15573 Avicennia marina HOM05D007245 ORTHO05D009049 1.1e-72 277.3 305 53.8
CANSAT64G0979 Cannabis sativa HOM05D007245 ORTHO05D009049 1.1e-72 277.3 315 51.7
Nitab4.5_0005095g0010 Nicotiana tabacum HOM05D007245 ORTHO05D009049 2.5e-72 276.2 302 55.3
Oeu050155.1 Olea europaea HOM05D007245 ORTHO05D009049 2.5e-72 276.2 305 53.4
RcHm_v2.0_Chr2g0137761 Rosa chinensis HOM05D007245 ORTHO05D009049 5.5e-72 275.0 309 52.1
TAR374G0050 Trochodendron aralioides HOM05D000179 ORTHO05D009049 2.7e-71 272.7 293 55.6
CAN.G1489.19 Capsicum annuum HOM05D007245 ORTHO05D009049 3.6e-71 272.3 305 52.8
QL02p068579 Quercus lobata HOM05D007245 ORTHO05D009049 2.3e-70 269.6 268 58.2
SGA_v2.0_scaffold47G17641 Striga asiatica HOM05D007245 ORTHO05D009049 4.0e-70 268.9 308 51.6
Aqoxy2G01225 Aquilegia oxysepala HOM05D007245 ORTHO05D009049 5.2e-70 268.5 313 52.1
Lalb_Chr24g0402921 Lupinus albus HOM05D007245 ORTHO05D009049 5.2e-70 268.5 307 51.1
Phvul.001G099200 Phaseolus vulgaris HOM05D007245 ORTHO05D009049 1.5e-69 266.9 306 52.0
Migut.K01486 Erythranthe guttata HOM05D007245 ORTHO05D009049 4.4e-69 265.4 307 51.8
SalBow7G3959 Salvia bowleyana HOM05D007245 ORTHO05D009049 7.5e-69 264.6 310 50.6
Manes.04G095000 Manihot esculenta HOM05D007245 ORTHO05D009049 9.8e-69 264.2 306 54.2
Gorai.007G071400 Gossypium raimondii HOM05D007245 ORTHO05D009049 2.2e-68 263.1 276 52.5
SHI23073 Sapria himalayana HOM05D000105 ORTHO05D000023 8.3e-68 261.2 305 50.5
Gohir.D11G065900 Gossypium hirsutum HOM05D007245 ORTHO05D009049 1.1e-67 260.8 276 52.2
Aa31LG11G15470 Aethionema arabicum HOM05D007245 ORTHO05D009049 9.2e-67 257.7 311 49.2
PGR142G1730 Punica granatum HOM05D007245 ORTHO05D009049 2.0e-66 256.5 311 50.2
C09p63210 Brassica napus HOM05D007245 ORTHO05D009049 7.7e-66 254.6 310 48.7
BolC9t59157H Brassica oleracea HOM05D007245 ORTHO05D009049 7.7e-66 254.6 310 48.7
BcaC04g19069 Brassica carinata HOM05D007245 ORTHO05D009049 1.7e-65 253.4 310 48.4
A10p24470 Brassica napus HOM05D007245 ORTHO05D009049 2.9e-65 252.7 312 47.8
BraA10t44512Z Brassica rapa HOM05D007245 ORTHO05D009049 3.8e-65 252.3 312 47.4
DCAR_000961 Daucus carota HOM05D007245 ORTHO05D009049 8.6e-65 251.1 307 49.2
Thhalv10014197m.g Eutrema salsugineum HOM05D007245 ORTHO05D009049 1.9e-64 250.0 312 47.4
CARHR199540 Cardamine hirsuta HOM05D007245 ORTHO05D009049 2.5e-64 249.6 319 47.6
Glyma.19G106200 Glycine max HOM05D007245 ORTHO05D009049 2.5e-64 249.6 306 48.7
Sed0008898 Sechium edule HOM05D007245 ORTHO05D009049 3.3e-64 249.2 300 49.7
Sp6g30110 Schrenkiella parvula HOM05D007245 ORTHO05D009049 4.3e-64 248.8 311 47.6
Carub.0006s1208 Capsella rubella HOM05D007245 ORTHO05D009049 2.1e-63 246.5 315 46.3
THA.LOC104822428 Tarenaya hassleriana HOM05D007245 ORTHO05D009049 2.1e-63 246.5 312 47.4
AT5G13890 Arabidopsis thaliana HOM05D007245 ORTHO05D009049 6.1e-63 245.0 316 46.5
AL6G24530 Arabidopsis lyrata HOM05D007245 ORTHO05D009049 1.4e-62 243.8 316 46.5
SGA_v2.0_scaffold34G13684 Striga asiatica HOM05D007245 ORTHO05D009049 1.4e-62 243.8 310 49.4
VMungo1383G3535 Vigna mungo HOM05D007245 ORTHO05D009049 1.4e-62 243.8 306 47.7
BcaC04g24245 Brassica carinata HOM05D007245 ORTHO05D009049 2.3e-62 243.0 313 47.0
CDE06G2711 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 2.6e-61 239.6 305 46.2
PSO017G6414 Papaver somniferum HOM05D007245 ORTHO05D009049 4.4e-61 238.8 306 49.0
PSO478G0086 Papaver somniferum HOM05D007245 ORTHO05D009049 9.8e-61 237.7 304 49.3
Cpa.g.sc70.41 Carica papaya HOM05D007245 ORTHO05D009049 6.4e-60 235.0 316 46.8
MBI11_g03703_MAGBIO Magnolia biondii HOM05D007245 ORTHO05D009049 5.4e-59 231.9 305 45.6
COL.COLO4_13398 Corchorus olitorius HOM05D005263 ORTHO05D006891 9.2e-59 231.1 160 76.9
Ah.03g136550 Amaranthus hybridus HOM05D001378 ORTHO05D001249 1.2e-58 230.7 289 47.1
TPR.G31664 Trifolium pratense HOM05D007245 ORTHO05D009049 1.5e-56 223.8 302 44.7
Medtr7g084610 Medicago truncatula HOM05D007245 ORTHO05D009049 1.9e-56 223.4 302 44.7
ATR0582G351 Amborella trichopoda HOM05D007245 ORTHO05D009049 5.6e-56 221.9 300 45.0
Lj1g0022763 Lotus japonicus HOM05D007245 ORTHO05D009049 3.6e-55 219.2 307 45.9
Sc03g0005330 Simmondsia chinensis HOM05D007245 ORTHO05D009049 9.8e-53 211.1 302 43.7
CDE02G4767 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 1.1e-48 197.6 275 44.7
unitig_0.g2407 Utricularia gibba HOM05D007245 ORTHO05D009049 9.5e-48 194.5 275 43.6
Ca_08230_v3 Cicer arietinum L. HOM05D007245 ORTHO05D009049 2.1e-47 193.4 167 59.3
Psat3g091920 Pisum sativum HOM05D007245 ORTHO05D009049 1.8e-46 190.3 183 57.9
AUR62042868 Chenopodium quinoa HOM05D007245 ORTHO05D009049 7.3e-40 168.3 130 66.9
HPP92_006441 Vanilla planifolia HOM05D007245 ORTHO05D009049 1.7e-36 157.1 301 37.9
SEGI_38415 Sequoiadendron giganteum HOM05D007245 ORTHO05D009049 3.0e-33 146.4 274 34.3
SMO329G0038 Selaginella moellendorffii HOM05D007245 ORTHO05D009049 1.2e-29 134.4 300 30.0
Pp3c8_3270 Physcomitrium patens HOM05D007245 ORTHO05D009049 7.6e-29 131.7 300 32.0
Mapoly0103s0043 Marchantia polymorpha HOM05D007245 ORTHO05D009049 5.6e-24 115.5 294 27.9
Zm00001eb113550 Zea mays HOM05D007245 ORTHO05D009049 1.5e-21 107.5 189 38.6
Pp3c4_3800 Physcomitrium patens HOM05D007245 ORTHO05D009049 1.3e-20 104.4 123 40.7
AagrBONN_evm.TU.Sc2ySwM_369.440 Anthoceros agrestis HOM05D007245 ORTHO05D009049 3.8e-20 102.8 138 42.0
GSVIVG01032953001 Vitis vinifera HOM05D007245 ORTHO05D009049 5.4e-19 99.0 116 55.2
Solyc05g008590.4 Solanum lycopersicum HOM05D007245 ORTHO05D009049 5.6e-16 89.0 84 56.0
Glyma.16G045802 Glycine max HOM05D007245 ORTHO05D009049 9.6e-16 88.2 83 54.2
Psat0s2487g0040 Pisum sativum HOM05D007245 ORTHO05D009049 9.6e-16 88.2 73 63.0
QL06p020732 Quercus lobata HOM05D008048 ORTHO05D010199 2.8e-15 86.7 289 28.7
ATR0736G121 Amborella trichopoda HOM05D008048 ORTHO05D010199 2.4e-14 83.6 155 33.5
Pp3c10_19560 Physcomitrium patens HOM05D007245 ORTHO05D009049 6.9e-14 82.0 288 26.7
Os11g0534100 Oryza sativa ssp. japonica HOM05D007245 ORTHO05D009049 1.5e-13 80.9 280 28.2
MBI07_g18713_MAGBIO Magnolia biondii HOM05D008048 ORTHO05D010199 3.4e-13 79.7 111 35.1
PGR004G1266 Punica granatum HOM05D008048 ORTHO05D010199 3.4e-13 79.7 279 27.6
Lsat_1_v5_gn_6_68700 Lactuca sativa HOM05D008048 ORTHO05D010199 1.3e-12 77.8 108 37.0
Hma1.2p1_0385F.1_g141480 Hydrangea macrophylla HOM05D008048 ORTHO05D010199 1.7e-12 77.4 111 34.2
Lalb_Chr19g0128481 Lupinus albus HOM05D008048 ORTHO05D010199 2.2e-12 77.0 138 34.8
Duzib151G0082 Durio zibethinus HOM05D008048 ORTHO05D010199 3.8e-12 76.3 113 37.2
Gohir.D01G023415 Gossypium hirsutum HOM05D008048 ORTHO05D010199 3.8e-12 76.3 113 36.3
TWI73G0695 Tripterygium wilfordii HOM05D008048 ORTHO05D010199 6.4e-12 75.5 283 29.3
Actinidia20832 Actinidia chinensis HOM05D008048 ORTHO05D010199 1.1e-11 74.7 114 35.1
Aqoxy5G00167 Aquilegia oxysepala HOM05D008048 ORTHO05D010199 1.1e-11 74.7 102 36.3
COL.COLO4_15948 Corchorus olitorius HOM05D008048 ORTHO05D010199 1.1e-11 74.7 279 25.8
PGSC0003DMG400017154 Solanum tuberosum HOM05D008048 ORTHO05D010199 1.1e-11 74.7 251 27.5
Migut.G00487 Erythranthe guttata HOM05D008048 ORTHO05D010199 2.4e-11 73.6 103 39.8
CAN.G220.87 Capsicum annuum HOM05D008048 ORTHO05D010199 3.2e-11 73.2 133 31.6
Gohir.A01G025700 Gossypium hirsutum HOM05D008048 ORTHO05D010199 4.2e-11 72.8 256 25.4
Oeu002289.1 Olea europaea HOM05D008048 ORTHO05D010199 4.2e-11 72.8 104 38.5
Nitab4.5_0002709g0050 Nicotiana tabacum HOM05D008048 ORTHO05D010199 5.5e-11 72.4 112 31.2
Dinv29814 Davidia involucrata HOM05D008048 ORTHO05D010199 7.1e-11 72.0 103 34.0
Gorai.002G026300 Gossypium raimondii HOM05D008048 ORTHO05D010199 7.1e-11 72.0 256 25.4
Sabra08G0130700 Salix brachista HOM05D008048 ORTHO05D010199 7.1e-11 72.0 131 35.9
SalBow3G4414 Salvia bowleyana HOM05D008048 ORTHO05D010199 7.1e-11 72.0 100 43.0
Haze_11446 Corylus avellana HOM05D008048 ORTHO05D010199 9.3e-11 71.6 259 27.0
Sed0019169 Sechium edule HOM05D008048 ORTHO05D010199 9.3e-11 71.6 256 25.0
TAR362G0870 Trochodendron aralioides HOM05D008048 ORTHO05D010199 9.3e-11 71.6 266 27.1
Cfa014771 Carpinus fangiana HOM05D008048 ORTHO05D010199 1.2e-10 71.2 257 26.8
Potri.008G170900 Populus trichocarpa HOM05D008048 ORTHO05D010199 1.2e-10 71.2 131 35.1
Peaxi162Scf00033g00292 Petunia axillaris HOM05D008048 ORTHO05D010199 1.6e-10 70.9 275 26.9
Sopen09g033500 Solanum pennellii HOM05D008048 ORTHO05D010199 1.6e-10 70.9 251 27.1
CiPaw.02G108000 Carya illinoinensis HOM05D008048 ORTHO05D010199 2.7e-10 70.1 102 35.3
Nn1g02915 Nelumbo nucifera HOM05D008048 ORTHO05D010199 2.7e-10 70.1 278 26.3
Prupe.1G046300 Prunus persica HOM05D008048 ORTHO05D010199 2.7e-10 70.1 111 34.2
FAN22G2321 Fragaria x ananassa HOM05D008048 ORTHO05D010199 3.5e-10 69.7 103 38.8
Ciclev10005562m.g Citrus clementina HOM05D008048 ORTHO05D010199 4.6e-10 69.3 249 26.9
FAN17G0666 Fragaria x ananassa HOM05D008048 ORTHO05D010199 4.6e-10 69.3 103 38.8
Lj6P622T54 Lonicera japonica HOM05D008048 ORTHO05D010199 4.6e-10 69.3 106 38.7
Atru.chr4.1935 Acer truncatum HOM05D008048 ORTHO05D010199 6.0e-10 68.9 249 25.3
CAN.G220.88 Capsicum annuum HOM05D008048 ORTHO05D010199 6.0e-10 68.9 106 35.8
GSVIVG01027901001 Vitis vinifera HOM05D008048 ORTHO05D010199 6.0e-10 68.9 102 40.2
Rhsim04G0173500 Rhododendron simsii HOM05D008048 ORTHO05D010199 7.9e-10 68.6 134 30.6
Sabra10G0040500 Salix brachista HOM05D008048 ORTHO05D010199 7.9e-10 68.6 258 24.8
FvH4_4g04390 Fragaria vesca HOM05D008048 ORTHO05D010199 1.0e-09 68.2 103 37.9
FAN12G0723 Fragaria x ananassa HOM05D008048 ORTHO05D010199 1.0e-09 68.2 103 37.9
FAN12G2845 Fragaria x ananassa HOM05D008048 ORTHO05D010199 1.0e-09 68.2 103 37.9
MD16G1225000 Malus domestica HOM05D008048 ORTHO05D010199 1.0e-09 68.2 97 38.1
Pp3c12_14270 Physcomitrium patens HOM05D007245 ORTHO05D009049 1.0e-09 68.2 214 26.6
MELO3C023035.2 Cucumis melo HOM05D008048 ORTHO05D010199 1.3e-09 67.8 241 24.9
Manes.15G044600 Manihot esculenta HOM05D008048 ORTHO05D010199 1.3e-09 67.8 252 26.6
Potri.010G067000 Populus trichocarpa HOM05D008048 ORTHO05D010199 1.3e-09 67.8 131 33.6
CsaV3_2G012520 Cucumis sativus L. HOM05D008048 ORTHO05D010199 1.8e-09 67.4 238 25.2
RcHm_v2.0_Chr4g0394961 Rosa chinensis HOM05D008048 ORTHO05D010199 2.3e-09 67.0 112 35.7
DCAR_027338 Daucus carota HOM05D008048 ORTHO05D010199 3.9e-09 66.2 128 32.8
AUR62002183 Chenopodium quinoa HOM05D008048 ORTHO05D010199 6.7e-09 65.5 116 31.0
Sc25g0003600 Simmondsia chinensis HOM05D008048 ORTHO05D010199 8.7e-09 65.1 131 32.1
TPR.G28751 Trifolium pratense HOM05D008048 ORTHO05D010199 1.1e-08 64.7 116 31.9
MD13G1219500 Malus domestica HOM05D008048 ORTHO05D010199 1.9e-08 63.9 105 32.4
Phvul.007G271100 Phaseolus vulgaris HOM05D008048 ORTHO05D010199 4.3e-08 62.8 121 35.5
Thecc.04G262100 Theobroma cacao HOM05D008048 ORTHO05D010199 4.3e-08 62.8 75 38.7
Ah.04g155360 Amaranthus hybridus HOM05D008048 ORTHO05D010199 5.6e-08 62.4 108 29.6
Glyma.20G086000 Glycine max HOM05D008048 ORTHO05D010199 5.6e-08 62.4 112 33.9
Psat6g106440 Pisum sativum HOM05D008048 ORTHO05D010199 5.6e-08 62.4 114 30.7
MSTRG.4161 Avicennia marina HOM05D008048 ORTHO05D010199 7.4e-08 62.0 112 32.1
VMungo0720G0410 Vigna mungo HOM05D008048 ORTHO05D010199 7.4e-08 62.0 112 32.1
SGA_v2.0_scaffold67G22704 Striga asiatica HOM05D008048 ORTHO05D010199 9.6e-08 61.6 79 41.8
Lj6g0004811 Lotus japonicus HOM05D008048 ORTHO05D010199 1.3e-07 61.2 103 34.0
Medtr1g045060 Medicago truncatula HOM05D008048 ORTHO05D010199 1.1e-06 58.2 133 29.3
AagrBONN_evm.TU.Sc2ySwM_117.4111 Anthoceros agrestis HOM05D001193 ORTHO05D001016 1.8e-06 57.4 267 21.7
Ca_11923_v3 Cicer arietinum L. HOM05D008048 ORTHO05D010199 4.0e-06 56.2 106 35.8


User provided reference genes

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