Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0165800 Salix brachista HOM05D006460 ORTHO05D008143 5.2e-270 933.7 450 100.0
Potri.002G189800 Populus trichocarpa HOM05D006460 ORTHO05D008143 1.3e-252 875.9 451 94.2
QL12p034319 Quercus lobata HOM05D006460 ORTHO05D008143 1.2e-200 703.4 467 72.6
Haze_05122 Corylus avellana HOM05D006460 ORTHO05D008143 1.2e-197 693.3 449 73.9
CiPaw.04G089700 Carya illinoinensis HOM05D006460 ORTHO05D008143 5.0e-196 688.0 449 73.5
Manes.05G010900 Manihot esculenta HOM05D006460 ORTHO05D008143 8.0e-194 680.6 442 75.3
Prupe.3G004500 Prunus persica HOM05D006460 ORTHO05D008143 8.0e-194 680.6 467 71.1
Duzib138G1376 Durio zibethinus HOM05D006460 ORTHO05D008143 4.4e-192 674.9 456 71.1
Gorai.001G146600 Gossypium raimondii HOM05D006460 ORTHO05D008143 1.1e-187 660.2 455 69.5
Ciclev10001046m.g Citrus clementina HOM05D006460 ORTHO05D008143 2.5e-187 659.1 459 70.6
Atru.chr5.915 Acer truncatum HOM05D006460 ORTHO05D008143 3.3e-187 658.7 454 68.9
Gohir.D07G134900 Gossypium hirsutum HOM05D006460 ORTHO05D008143 3.3e-187 658.7 455 69.2
GSVIVG01028196001 Vitis vinifera HOM05D006460 ORTHO05D008143 4.3e-187 658.3 451 70.7
MD09G1293200 Malus domestica HOM05D006460 ORTHO05D008143 9.5e-187 657.1 466 69.7
FvH4_1g26500 Fragaria vesca HOM05D006460 ORTHO05D008143 4.0e-185 651.7 485 67.8
CANSAT56G1882 Cannabis sativa HOM05D006460 ORTHO05D008143 1.3e-183 646.7 469 68.0
TAR362G0080 Trochodendron aralioides HOM05D006460 ORTHO05D008143 2.2e-183 646.0 473 67.7
FAN28G1427 Fragaria x ananassa HOM05D006460 ORTHO05D008143 2.4e-182 642.5 482 67.2
Eucgr.H00886 Eucalyptus grandis HOM05D006460 ORTHO05D008143 3.2e-182 642.1 456 68.2
COL.COLO4_23162 Corchorus olitorius HOM05D006460 ORTHO05D008143 5.4e-182 641.3 456 68.6
RcHm_v2.0_Chr3g0486571 Rosa chinensis HOM05D006460 ORTHO05D008143 3.5e-181 638.6 478 68.0
Lalb_Chr17g0338451 Lupinus albus HOM05D006460 ORTHO05D008143 1.7e-180 636.3 463 65.9
Lj1C11T12 Lonicera japonica HOM05D006460 ORTHO05D008143 1.5e-179 633.3 469 67.0
Lj2g0013221 Lotus japonicus HOM05D006460 ORTHO05D008143 4.3e-179 631.7 460 67.2
Thecc.01G322200 Theobroma cacao HOM05D006460 ORTHO05D008143 1.2e-178 630.2 457 68.5
TWI14G0400 Tripterygium wilfordii HOM05D006460 ORTHO05D008143 2.1e-178 629.4 452 67.7
Cpa.g.sc543.2 Carica papaya HOM05D006460 ORTHO05D008143 1.5e-176 623.2 466 65.2
Sc17g0000180 Simmondsia chinensis HOM05D006460 ORTHO05D008143 1.3e-175 620.2 454 66.7
Ca_12543_v3 Cicer arietinum L. HOM05D006460 ORTHO05D008143 4.1e-174 615.1 463 64.8
VMungo1215G1636 Vigna mungo HOM05D006460 ORTHO05D008143 5.4e-174 614.8 463 65.7
Sed0027463 Sechium edule HOM05D006460 ORTHO05D008143 1.6e-173 613.2 451 65.0
Actinidia21358 Actinidia chinensis HOM05D006460 ORTHO05D008143 2.1e-173 612.8 477 64.2
DCAR_012316 Daucus carota HOM05D006460 ORTHO05D008143 2.1e-173 612.8 455 65.3
Phvul.003G019300 Phaseolus vulgaris HOM05D006460 ORTHO05D008143 2.3e-172 609.4 461 65.7
Glyma.07G170000 Glycine max HOM05D006460 ORTHO05D008143 2.5e-171 605.9 462 64.5
Oeu002575.1 Olea europaea HOM05D006460 ORTHO05D008143 7.3e-171 604.4 459 63.2
Nn4g25417 Nelumbo nucifera HOM05D006460 ORTHO05D008143 9.5e-171 604.0 476 63.9
PGSC0003DMG400005211 Solanum tuberosum HOM05D006460 ORTHO05D008143 3.1e-169 599.0 443 65.5
PGR083G0788 Punica granatum HOM05D006460 ORTHO05D008143 4.0e-169 598.6 461 64.6
Gohir.A07G130500 Gossypium hirsutum HOM05D006460 ORTHO05D008143 8.9e-169 597.4 456 64.7
Solyc01g068050.3 Solanum lycopersicum HOM05D006460 ORTHO05D008143 8.9e-169 597.4 443 65.2
Cfa004883 Carpinus fangiana HOM05D006460 ORTHO05D008143 1.2e-168 597.0 403 72.0
ClCG09G004700 Citrullus lanatus HOM05D006460 ORTHO05D008143 1.5e-168 596.7 462 62.1
FAN19G0891 Fragaria x ananassa HOM05D006460 ORTHO05D008143 7.5e-168 594.3 485 64.1
CSS0037090 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 9.9e-168 594.0 485 62.1
CAN.G100.27 Capsicum annuum HOM05D006460 ORTHO05D008143 9.9e-168 594.0 452 65.3
FAN26G0500 Fragaria x ananassa HOM05D006460 ORTHO05D008143 1.3e-167 593.6 482 64.3
AUR62024570 Chenopodium quinoa HOM05D006460 ORTHO05D008143 1.7e-167 593.2 442 64.5
Medtr1g032120 Medicago truncatula HOM05D006460 ORTHO05D008143 3.7e-167 592.0 460 63.3
vmacro02372 Vaccinium macrocarpon HOM05D006460 ORTHO05D008143 4.1e-166 588.6 519 58.2
AUR62011736 Chenopodium quinoa HOM05D006460 ORTHO05D008143 9.2e-166 587.4 442 63.8
Psat6g046360 Pisum sativum HOM05D006460 ORTHO05D008143 1.2e-165 587.0 460 62.4
THA.LOC104801320 Tarenaya hassleriana HOM05D006460 ORTHO05D008143 2.1e-165 586.3 455 63.3
TPR.G36866 Trifolium pratense HOM05D006460 ORTHO05D008143 4.6e-165 585.1 495 58.8
Aqoxy5G02768 Aquilegia oxysepala HOM05D006460 ORTHO05D008143 1.3e-164 583.6 469 60.6
arahy.Tifrunner.gnm1.ann1.N25L3F Arachis hypogaea HOM05D006460 ORTHO05D008143 3.9e-164 582.0 499 59.7
Thhalv10028644m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 5.1e-164 581.6 455 62.4
Thhalv10028645m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 5.1e-164 581.6 455 62.4
BcaB01g02385 Brassica carinata HOM05D006460 ORTHO05D008143 1.5e-163 580.1 445 63.6
C03p38430 Brassica napus HOM05D006460 ORTHO05D008143 1.9e-163 579.7 447 63.1
AT4G01880 Arabidopsis thaliana HOM05D006460 ORTHO05D008143 5.6e-163 578.2 447 63.8
BcaC01g06799 Brassica carinata HOM05D006460 ORTHO05D008143 5.6e-163 578.2 447 62.9
BolC3t16117H Brassica oleracea HOM05D006460 ORTHO05D008143 5.6e-163 578.2 447 62.9
arahy.Tifrunner.gnm1.ann1.R72PZK Arachis hypogaea HOM05D006460 ORTHO05D008143 7.3e-163 577.8 505 58.8
A03p31440 Brassica napus HOM05D006460 ORTHO05D008143 7.3e-163 577.8 448 62.7
CARHR249840 Cardamine hirsuta HOM05D006460 ORTHO05D008143 7.3e-163 577.8 444 63.1
AL6G51420 Arabidopsis lyrata HOM05D006460 ORTHO05D008143 3.6e-162 575.5 452 63.3
Carub.0006s3536 Capsella rubella HOM05D006460 ORTHO05D008143 8.1e-162 574.3 451 63.0
BraA03t12325Z Brassica rapa HOM05D006460 ORTHO05D008143 1.1e-161 573.9 449 62.8
Cc01_g21920 Coffea canephora HOM05D006460 ORTHO05D008143 1.4e-161 573.5 455 62.9
SalBow6G2760 Salvia bowleyana HOM05D006460 ORTHO05D008143 1.4e-161 573.5 455 61.8
Sp6g01720 Schrenkiella parvula HOM05D006460 ORTHO05D008143 1.8e-161 573.2 456 62.9
Migut.D00030 Erythranthe guttata HOM05D006460 ORTHO05D008143 3.1e-161 572.4 456 62.3
PSO357G0369 Papaver somniferum HOM05D006460 ORTHO05D008143 1.2e-160 570.5 460 62.2
Nitab4.5_0000222g0270 Nicotiana tabacum HOM05D006460 ORTHO05D008143 7.6e-160 567.8 476 60.7
HanXRQChr13g0414441 Helianthus annuus HOM05D006460 ORTHO05D008143 1.3e-159 567.0 444 64.2
Aa31LG5G1480 Aethionema arabicum HOM05D006460 ORTHO05D008143 7.1e-158 561.2 477 60.6
MSTRG.21724 Avicennia marina HOM05D006460 ORTHO05D008143 7.1e-158 561.2 455 60.9
SGA_v2.0_scaffold417G51258 Striga asiatica HOM05D006460 ORTHO05D008143 1.7e-156 556.6 460 59.6
Hund09677 Selenicereus undatus HOM05D006460 ORTHO05D008143 2.5e-155 552.7 460 60.4
Rhsim13G0001100 Rhododendron simsii HOM05D006460 ORTHO05D008143 5.6e-155 551.6 417 67.6
Lsat_1_v5_gn_8_167341 Lactuca sativa HOM05D006460 ORTHO05D008143 1.5e-152 543.5 443 61.9
ATR0796G118 Amborella trichopoda HOM05D006460 ORTHO05D008143 1.0e-148 530.8 495 53.7
EL10As5g23582 Beta vulgaris HOM05D006460 ORTHO05D008143 5.6e-147 525.0 463 59.4
CDE08G1018 Ceratophyllum demersum HOM05D006460 ORTHO05D008143 7.3e-147 524.6 476 55.7
MELO3C023610.2 Cucumis melo HOM05D006460 ORTHO05D008143 1.2e-144 517.3 438 57.1
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 1.6e-141 506.9 411 61.1
Nitab4.5_0002994g0020 Nicotiana tabacum HOM05D006460 ORTHO05D008143 1.5e-139 500.4 470 55.7
CsaV3_7G030430 Cucumis sativus L. HOM05D006460 ORTHO05D008143 3.4e-136 489.2 356 66.0
Eucgr.L00887 Eucalyptus grandis HOM05D006460 ORTHO05D008143 5.8e-136 488.4 349 67.9
PSO170G6216 Papaver somniferum HOM05D006460 ORTHO05D008143 8.4e-135 484.6 385 63.4
PSO384G3244 Papaver somniferum HOM05D006460 ORTHO05D008143 2.1e-133 479.9 385 62.3
Dinv33158 Davidia involucrata HOM05D001974 ORTHO05D001995 7.9e-133 478.0 333 69.1
HPP92_010877 Vanilla planifolia HOM05D000746 ORTHO05D000573 7.9e-133 478.0 444 52.9
CSS0008981 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 9.6e-131 471.1 359 66.3
Ah.11g045760 Amaranthus hybridus HOM05D006460 ORTHO05D008143 4.9e-127 458.8 449 53.7
Zm00001eb211340 Zea mays HOM05D006460 ORTHO05D008143 2.9e-119 433.0 354 59.6
AagrBONN_evm.TU.Sc2ySwM_228.322 Anthoceros agrestis HOM05D006460 ORTHO05D008143 1.1e-110 404.4 449 46.5
AagrBONN_evm.TU.Sc2ySwM_344.3324 Anthoceros agrestis HOM05D006460 ORTHO05D008143 8.8e-108 394.8 447 45.6
Pp3c21_16200 Physcomitrium patens HOM05D006460 ORTHO05D008143 1.4e-105 387.5 517 38.9
Mapoly0095s0050 Marchantia polymorpha HOM05D006460 ORTHO05D008143 1.3e-103 380.9 485 41.2
Sopen01g029980 Solanum pennellii HOM05D006460 ORTHO05D008143 4.7e-101 372.5 288 64.2
SMO010G0007 Selaginella moellendorffii HOM05D006460 ORTHO05D008143 1.2e-96 357.8 452 40.0
Peaxi162Scf00919g00047 Petunia axillaris HOM05D006460 ORTHO05D008143 4.5e-96 355.9 356 54.2
MBI18_g28900_MAGBIO Magnolia biondii HOM05D006460 ORTHO05D008143 1.9e-86 323.9 438 42.2
unitig_578.g16638 Utricularia gibba HOM05D006460 ORTHO05D008143 1.3e-74 284.6 447 39.6
Os03g0833200 Oryza sativa ssp. japonica HOM05D006460 ORTHO05D008143 3.5e-64 250.0 234 53.0
MCO13G012 Micromonas commoda HOM05D006460 ORTHO05D008143 6.0e-48 196.1 466 30.3
MD17G1281000 Malus domestica HOM05D006460 ORTHO05D008143 2.4e-44 184.1 234 46.6
SMO339G0034 Selaginella moellendorffii HOM05D006460 ORTHO05D008143 8.9e-44 182.2 247 39.7
PRCOL_00001885 Prasinoderma coloniale HOM05D006460 ORTHO05D008143 3.8e-42 176.8 477 29.6
SEGI_40178 Sequoiadendron giganteum HOM05D006460 ORTHO05D008143 1.4e-41 174.9 278 37.1
AUR62029044 Chenopodium quinoa HOM05D006460 ORTHO05D008143 3.2e-41 173.7 155 58.7
AUR62036055 Chenopodium quinoa HOM05D006460 ORTHO05D008143 2.1e-40 171.0 155 57.4
CBR_g49426 Chara braunii HOM05D006460 ORTHO05D008143 6.2e-21 106.3 91 52.7
AagrBONN_evm.TU.Sc2ySwM_228.45 Anthoceros agrestis HOM05D006460 ORTHO05D008143 1.4e-20 105.1 212 34.0
QL04p085746 Quercus lobata HOM05D006460 ORTHO05D008143 6.9e-20 102.8 107 53.3
AUR62007801 Chenopodium quinoa HOM05D006460 ORTHO05D008143 9.3e-17 92.4 79 58.2
RcHm_v2.0_Chr7g0232271 Rosa chinensis HOM05D006460 ORTHO05D008143 1.6e-16 91.7 78 65.4
QL05p033637 Quercus lobata HOM05D000101 ORTHO05D000089 4.6e-16 90.1 71 59.2
Hund09679 Selenicereus undatus HOM05D006460 ORTHO05D008143 7.4e-14 82.8 59 57.6
Cre16.g654992 Chlamydomonas reinhardtii HOM05D006460 ORTHO05D008143 9.0e-12 75.9 102 39.2
CDE02G3709 Ceratophyllum demersum HOM05D006460 ORTHO05D008143 2.1e-08 64.7 48 56.2
AUR62043166 Chenopodium quinoa HOM05D006460 ORTHO05D008143 2.7e-08 64.3 64 54.7
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 1.0e-07 62.4 75 42.7


User provided reference genes

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