Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0154600 Salix brachista HOM05D004753 ORTHO05D005920 2.6e-212 741.9 380 100.0
Potri.002G204900 Populus trichocarpa HOM05D004753 ORTHO05D005920 7.6e-164 580.9 311 95.2
Potri.014G129700 Populus trichocarpa HOM05D004753 ORTHO05D005920 1.1e-159 567.0 311 92.0
Sabra14G0096300 Salix brachista HOM05D004753 ORTHO05D005920 1.9e-159 566.2 310 91.3
CiPaw.14G100000 Carya illinoinensis HOM05D004753 ORTHO05D005920 4.2e-154 548.5 311 86.5
Haze_24929 Corylus avellana HOM05D004753 ORTHO05D005920 2.1e-153 546.2 311 86.2
QL09p032163 Quercus lobata HOM05D004753 ORTHO05D005920 4.6e-153 545.0 349 79.4
ClCG10G010920 Citrullus lanatus HOM05D004753 ORTHO05D005920 1.3e-152 543.5 308 88.0
Haze_04935 Corylus avellana HOM05D004753 ORTHO05D005920 1.7e-152 543.1 311 85.5
QL12p028506 Quercus lobata HOM05D004753 ORTHO05D005920 1.5e-151 540.0 310 87.1
Ciclev10023300m.g Citrus clementina HOM05D004753 ORTHO05D005920 4.3e-151 538.5 309 86.4
MELO3C017956.2 Cucumis melo HOM05D004753 ORTHO05D005920 7.3e-151 537.7 312 86.2
MD11G1310300 Malus domestica HOM05D004753 ORTHO05D005920 2.1e-150 536.2 311 84.2
PGR044G2668 Punica granatum HOM05D004753 ORTHO05D005920 2.8e-150 535.8 311 83.9
THA.LOC104818291 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 2.8e-150 535.8 313 84.0
Manes.01G218800 Manihot esculenta HOM05D004753 ORTHO05D005920 3.6e-150 535.4 311 85.2
CSS0011058 Camellia sinensis var. sinensis HOM05D004753 ORTHO05D005920 4.8e-150 535.0 303 86.5
MD03G1288000 Malus domestica HOM05D004753 ORTHO05D005920 4.8e-150 535.0 311 84.2
CsaV3_4G000800 Cucumis sativus L. HOM05D004753 ORTHO05D005920 1.1e-149 533.9 312 85.6
Sed0000474 Sechium edule HOM05D004753 ORTHO05D005920 1.4e-149 533.5 302 87.1
Cpa.g.sc16.169 Carica papaya HOM05D004753 ORTHO05D005920 2.4e-149 532.7 303 86.1
Cc09_g07750 Coffea canephora HOM05D004753 ORTHO05D005920 2.4e-149 532.7 312 85.3
GSVIVG01028012001 Vitis vinifera HOM05D004753 ORTHO05D005920 5.3e-149 531.6 311 84.9
vmacro15009 Vaccinium macrocarpon HOM05D004753 ORTHO05D005920 1.5e-148 530.0 306 86.3
Eucgr.K03479 Eucalyptus grandis HOM05D004753 ORTHO05D005920 2.6e-148 529.3 312 84.3
Oeu046682.2 Olea europaea HOM05D004753 ORTHO05D005920 2.6e-148 529.3 303 86.8
TAR636G3371 Trochodendron aralioides HOM05D004753 ORTHO05D005920 3.4e-148 528.9 313 84.0
CANSAT54G1658 Cannabis sativa HOM05D004753 ORTHO05D005920 7.6e-148 527.7 303 86.8
Nn3g21484 Nelumbo nucifera HOM05D004753 ORTHO05D005920 7.6e-148 527.7 303 86.1
TWI59G0801 Tripterygium wilfordii HOM05D004753 ORTHO05D005920 7.6e-148 527.7 316 83.2
Duzib138G1754 Durio zibethinus HOM05D004753 ORTHO05D005920 8.4e-147 524.2 312 84.0
Lsat_1_v5_gn_4_87281 Lactuca sativa HOM05D004753 ORTHO05D005920 1.1e-146 523.9 312 83.3
Atru.chr5.901 Acer truncatum HOM05D004753 ORTHO05D005920 3.2e-146 522.3 315 82.5
Oeu011458.1 Olea europaea HOM05D004753 ORTHO05D005920 7.1e-146 521.2 311 83.9
Thecc.01G300100 Theobroma cacao HOM05D004753 ORTHO05D005920 1.2e-145 520.4 315 83.2
MSTRG.18152 Avicennia marina HOM05D004753 ORTHO05D005920 6.0e-145 518.1 311 83.3
Duzib133G0229 Durio zibethinus HOM05D004753 ORTHO05D005920 7.9e-145 517.7 313 83.1
Rhsim01G0243400 Rhododendron simsii HOM05D004753 ORTHO05D005920 7.9e-145 517.7 354 75.1
MBI18_g06877_MAGBIO Magnolia biondii HOM05D004753 ORTHO05D005920 3.0e-144 515.8 312 81.7
SGA_v2.0_scaffold2G01394 Striga asiatica HOM05D004753 ORTHO05D005920 8.7e-144 514.2 306 84.0
Thhalv10004503m.g Eutrema salsugineum HOM05D004753 ORTHO05D005920 2.5e-143 512.7 313 80.8
SalBow3G1002 Salvia bowleyana HOM05D004753 ORTHO05D005920 3.3e-143 512.3 311 83.3
Sp2g24970 Schrenkiella parvula HOM05D004753 ORTHO05D005920 4.3e-143 511.9 310 81.3
ECA238G0492 Erigeron canadensis HOM05D004753 ORTHO05D005920 1.3e-142 510.4 311 81.4
Lj2A1194G52 Lonicera japonica HOM05D004753 ORTHO05D005920 1.3e-142 510.4 302 85.1
CARHR275530 Cardamine hirsuta HOM05D004753 ORTHO05D005920 1.6e-142 510.0 313 80.2
Hund05425 Selenicereus undatus HOM05D004753 ORTHO05D005920 1.6e-142 510.0 323 78.9
Gohir.D08G138800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 3.7e-142 508.8 313 81.8
Gorai.004G142400 Gossypium raimondii HOM05D004753 ORTHO05D005920 8.1e-142 507.7 313 81.8
Nitab4.5_0002687g0080 Nicotiana tabacum HOM05D004753 ORTHO05D005920 1.8e-141 506.5 312 82.1
Peaxi162Scf01084g00120 Petunia axillaris HOM05D004753 ORTHO05D005920 2.4e-141 506.1 308 81.8
COL.COLO4_23348 Corchorus olitorius HOM05D004753 ORTHO05D005920 6.9e-141 504.6 319 79.6
Gohir.A08G117800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.2e-140 503.8 311 82.0
HanXRQChr08g0207921 Helianthus annuus HOM05D004753 ORTHO05D005920 1.5e-140 503.4 319 79.3
AL8G38530 Arabidopsis lyrata HOM05D004753 ORTHO05D005920 2.6e-140 502.7 312 79.5
SGA_v2.0_scaffold1G00368 Striga asiatica HOM05D004753 ORTHO05D005920 4.5e-140 501.9 328 79.3
DCAR_012396 Daucus carota HOM05D004753 ORTHO05D005920 1.3e-139 500.4 308 80.2
Aa31LG11G1720 Aethionema arabicum HOM05D004753 ORTHO05D005920 2.9e-139 499.2 308 80.5
Carub.0008s2246 Capsella rubella HOM05D004753 ORTHO05D005920 8.4e-139 497.7 303 81.2
Sc17g0002740 Simmondsia chinensis HOM05D004753 ORTHO05D005920 8.4e-139 497.7 298 81.2
Aqoxy2G02947 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 1.1e-138 497.3 311 79.4
BcaB02g09600 Brassica carinata HOM05D004753 ORTHO05D005920 1.1e-138 497.3 315 78.7
AT5G61770 Arabidopsis thaliana HOM05D004753 ORTHO05D005920 1.4e-138 496.9 312 78.8
Nitab4.5_0008999g0010 Nicotiana tabacum HOM05D004753 ORTHO05D005920 1.4e-138 496.9 296 83.8
BcaC04g23436 Brassica carinata HOM05D004753 ORTHO05D005920 3.2e-138 495.7 311 80.1
C09p08350 Brassica napus HOM05D004753 ORTHO05D005920 3.2e-138 495.7 311 80.1
BolC9t53745H Brassica oleracea HOM05D004753 ORTHO05D005920 3.2e-138 495.7 311 80.1
BcaC01g02428 Brassica carinata HOM05D004753 ORTHO05D005920 4.2e-138 495.4 313 78.0
A06p28420 Brassica napus HOM05D004753 ORTHO05D005920 4.2e-138 495.4 313 78.0
C03p65390 Brassica napus HOM05D004753 ORTHO05D005920 4.2e-138 495.4 313 78.0
BolC3t18792H Brassica oleracea HOM05D004753 ORTHO05D005920 4.2e-138 495.4 313 78.0
BraA06t25786Z Brassica rapa HOM05D004753 ORTHO05D005920 4.2e-138 495.4 313 78.0
PGSC0003DMG401027528 Solanum tuberosum HOM05D004753 ORTHO05D005920 9.3e-138 494.2 312 78.8
BraA09t36398Z Brassica rapa HOM05D004753 ORTHO05D005920 7.9e-137 491.1 311 79.1
ATR0584G246 Amborella trichopoda HOM05D004753 ORTHO05D005920 1.3e-136 490.3 297 80.1
Actinidia15830 Actinidia chinensis HOM05D004753 ORTHO05D005920 3.0e-136 489.2 309 80.3
A09p07440 Brassica napus HOM05D004753 ORTHO05D005920 3.0e-136 489.2 311 78.8
CAN.G134.43 Capsicum annuum HOM05D004753 ORTHO05D005920 9.6e-135 484.2 312 77.9
HPP92_002997 Vanilla planifolia HOM05D004753 ORTHO05D005920 9.6e-135 484.2 310 77.4
Solyc01g096800.3 Solanum lycopersicum HOM05D004753 ORTHO05D005920 1.1e-133 480.7 312 76.9
Sopen01g040500 Solanum pennellii HOM05D004753 ORTHO05D005920 5.3e-133 478.4 312 76.6
BcaNung01420 Brassica carinata HOM05D004753 ORTHO05D005920 1.5e-132 476.9 314 77.7
Glyma.12G026700 Glycine max HOM05D004753 ORTHO05D005920 4.5e-132 475.3 307 77.5
AUR62008626 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.0e-131 474.2 301 77.7
Phvul.011G029700 Phaseolus vulgaris HOM05D004753 ORTHO05D005920 1.7e-131 473.4 305 76.7
PSO832G3876 Papaver somniferum HOM05D004753 ORTHO05D005920 3.8e-131 472.2 315 77.5
FvH4_2g25700 Fragaria vesca HOM05D004753 ORTHO05D005920 6.5e-131 471.5 317 73.8
Lj3g0027269 Lotus japonicus HOM05D004753 ORTHO05D005920 6.5e-131 471.5 309 76.4
VMungo1127G1640 Vigna mungo HOM05D004753 ORTHO05D005920 6.5e-131 471.5 314 75.5
Ca_19020_v3 Cicer arietinum L. HOM05D004753 ORTHO05D005920 1.1e-130 470.7 314 74.2
arahy.Tifrunner.gnm1.ann1.B7L3V1 Arachis hypogaea HOM05D004753 ORTHO05D005920 1.4e-130 470.3 305 77.7
Glyma.11G100700 Glycine max HOM05D004753 ORTHO05D005920 1.4e-130 470.3 307 76.2
FAN24G0086 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.9e-130 469.9 317 73.5
RcHm_v2.0_Chr6g0293981 Rosa chinensis HOM05D004753 ORTHO05D005920 1.9e-130 469.9 319 72.4
arahy.Tifrunner.gnm1.ann1.89EUFG Arachis hypogaea HOM05D004753 ORTHO05D005920 5.5e-130 468.4 312 76.0
FAN15G2487 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.2e-129 467.2 322 72.7
PSO017G3074 Papaver somniferum HOM05D004753 ORTHO05D005920 1.6e-129 466.8 314 76.1
PSO210G3006 Papaver somniferum HOM05D004753 ORTHO05D005920 1.6e-129 466.8 314 76.4
PSO170G0569 Papaver somniferum HOM05D004753 ORTHO05D005920 2.1e-129 466.5 314 75.8
HanXRQChr12g0368811 Helianthus annuus HOM05D004753 ORTHO05D005920 2.7e-129 466.1 304 77.6
Lalb_Chr01g0001441 Lupinus albus HOM05D004753 ORTHO05D005920 7.9e-129 464.5 295 78.3
FAN20G2170 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.8e-128 463.4 322 72.0
FAN27G0535 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.8e-128 463.4 322 72.0
Dinv37873 Davidia involucrata HOM05D004753 ORTHO05D005920 8.7e-128 461.1 254 88.2
TPR.G32348 Trifolium pratense HOM05D004753 ORTHO05D005920 2.5e-127 459.5 307 74.6
unitig_26.g10170 Utricularia gibba HOM05D004753 ORTHO05D005920 4.6e-121 438.7 260 82.7
Ah.08g213470 Amaranthus hybridus HOM05D004753 ORTHO05D005920 3.3e-119 432.6 314 72.3
AUR62033145 Chenopodium quinoa HOM05D004753 ORTHO05D005920 2.2e-118 429.9 301 72.8
Ah.15g093220 Amaranthus hybridus HOM05D004753 ORTHO05D005920 1.4e-114 417.2 296 72.6
TAR365G0243 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.5e-111 407.1 230 86.1
Prupe.8G261200 Prunus persica HOM05D004753 ORTHO05D005920 8.2e-110 401.4 230 84.3
Pp3c2_30030 Physcomitrium patens HOM05D004753 ORTHO05D005920 7.7e-108 394.8 307 62.2
CDE09G1083 Ceratophyllum demersum HOM05D004753 ORTHO05D005920 8.5e-107 391.3 255 76.1
Actinidia01484 Actinidia chinensis HOM05D004753 ORTHO05D005920 9.4e-106 387.9 270 76.3
Os03g0343700 Oryza sativa ssp. japonica HOM05D004753 ORTHO05D005920 1.2e-105 387.5 289 63.3
SMO331G0088 Selaginella moellendorffii HOM05D004753 ORTHO05D005920 1.2e-105 387.5 284 64.8
Gorai.002G117300 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.5e-103 380.6 292 69.2
Medtr4g075050 Medicago truncatula HOM05D004753 ORTHO05D005920 3.3e-103 379.4 307 65.1
Zm00001eb016460 Zea mays HOM05D004753 ORTHO05D005920 4.4e-103 379.0 282 64.2
AagrBONN_evm.TU.Sc2ySwM_362.2675 Anthoceros agrestis HOM05D004753 ORTHO05D005920 1.7e-102 377.1 301 61.5
Mapoly0097s0041 Marchantia polymorpha HOM05D004753 ORTHO05D005920 2.4e-101 373.2 301 59.1
Aqoxy311s002 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 9.4e-98 361.3 221 80.1
Psat7g177400 Pisum sativum HOM05D004753 ORTHO05D005920 6.7e-96 355.1 218 78.9
Actinidia32213 Actinidia chinensis HOM05D004753 ORTHO05D005920 2.0e-87 327.0 237 71.7
CBR_g227 Chara braunii HOM05D004753 ORTHO05D005920 8.3e-86 321.6 246 63.4
Cre10.g450879 Chlamydomonas reinhardtii HOM05D004753 ORTHO05D005920 3.1e-77 293.1 277 49.8
MCO08G191 Micromonas commoda HOM05D004753 ORTHO05D005920 8.6e-75 285.0 304 47.7
Sed0023746 Sechium edule HOM05D004753 ORTHO05D005920 5.6e-74 282.3 318 52.2
THA.LOC104801723 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 9.5e-74 281.6 149 89.3
Gorai.012G092400 Gossypium raimondii HOM05D004753 ORTHO05D005920 4.3e-66 256.1 166 77.1
PRCOL_00006477 Prasinoderma coloniale HOM05D004753 ORTHO05D005920 3.7e-54 216.5 234 44.9
AUR62033152 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.8e-48 197.6 158 63.9
Migut.B01152 Erythranthe guttata HOM05D004753 ORTHO05D005920 1.3e-43 181.4 112 78.6
Haze_27315 Corylus avellana HOM05D004753 ORTHO05D005920 1.7e-43 181.0 291 37.8
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.4e-40 170.6 194 51.0
Cfa026076 Carpinus fangiana HOM05D004753 ORTHO05D005920 3.1e-40 170.2 370 32.4
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.9e-34 151.0 94 76.6
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 5.6e-34 149.4 94 75.5
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 5.6e-34 149.4 94 75.5
MD08G1232400 Malus domestica HOM05D004753 ORTHO05D005920 7.3e-34 149.1 111 70.3
Actinidia16175 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.3e-33 148.3 130 62.3
arahy.Tifrunner.gnm1.ann1.81M7HI Arachis hypogaea HOM05D004753 ORTHO05D005920 2.6e-31 140.6 97 75.3
arahy.Tifrunner.gnm1.ann1.JRXS1U Arachis hypogaea HOM05D004753 ORTHO05D005920 7.6e-31 139.0 95 75.8
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 5.1e-19 99.8 100 57.0
Gorai.007G256100 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.1e-18 98.6 72 68.1
PGSC0003DMG400004411 Solanum tuberosum HOM05D004753 ORTHO05D005920 6.2e-17 92.8 53 83.0
Migut.D00217 Erythranthe guttata HOM05D004753 ORTHO05D005920 1.8e-16 91.3 67 73.1
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 5.3e-16 89.7 59 74.6
CANSAT21G1846 Cannabis sativa HOM05D000521 ORTHO05D000384 1.5e-15 88.2 51 84.3
Hma1.2p1_1471F.1_g285675 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 2.2e-14 84.3 48 85.4
Hma1.2p1_1471F.1_g285690 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 2.2e-14 84.3 48 85.4
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 6.9e-08 62.8 84 44.0
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 6.5e-06 56.2 31 80.6
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 6.5e-06 56.2 31 80.6
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 6.5e-06 56.2 31 80.6
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 6.5e-06 56.2 31 80.6
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 6.5e-06 56.2 31 80.6


User provided reference genes

Program Settings