Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 5.1e-201 704.1 342 100.0
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 1.2e-96 357.5 308 64.6
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 5.0e-95 352.1 308 61.4
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 3.1e-89 332.8 308 58.8
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 1.0e-79 301.2 310 52.9
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 2.9e-79 299.7 311 52.4
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 2.9e-79 299.7 310 54.8
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 5.0e-79 298.9 312 54.8
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 5.0e-79 298.9 300 53.3
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 5.0e-79 298.9 310 53.2
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 1.1e-78 297.7 317 52.4
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 2.5e-78 296.6 310 53.2
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 5.5e-78 295.4 312 52.2
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 7.2e-78 295.0 310 53.2
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 2.7e-77 293.1 310 52.6
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 1.0e-76 291.2 310 51.0
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 1.8e-76 290.4 313 52.1
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 2.3e-76 290.0 310 51.9
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 3.0e-76 289.7 310 51.6
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 6.7e-76 288.5 308 52.3
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 6.7e-76 288.5 310 51.9
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 8.8e-76 288.1 310 52.6
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 1.5e-75 287.3 310 53.2
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 5.7e-75 285.4 310 51.6
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 5.7e-75 285.4 310 50.6
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 9.7e-75 284.6 314 52.9
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 1.3e-74 284.3 310 51.6
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 1.7e-74 283.9 310 53.5
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 4.8e-74 282.3 310 50.6
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 4.8e-74 282.3 310 51.6
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 1.4e-73 280.8 322 51.6
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 2.4e-73 280.0 310 50.0
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 5.3e-73 278.9 319 51.1
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 5.3e-73 278.9 310 50.0
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 2.0e-72 276.9 320 50.3
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 3.5e-72 276.2 314 51.0
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 3.5e-72 276.2 152 83.6
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 4.5e-72 275.8 310 51.0
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 5.9e-72 275.4 313 48.9
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 5.9e-72 275.4 313 48.9
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 5.9e-72 275.4 313 50.8
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 1.0e-71 274.6 314 48.7
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 1.0e-71 274.6 308 50.3
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 1.3e-71 274.2 311 52.1
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 2.9e-71 273.1 310 50.6
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 2.9e-71 273.1 309 48.9
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 3.8e-71 272.7 152 83.6
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 3.8e-71 272.7 312 50.6
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 5.0e-71 272.3 308 50.0
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 6.5e-71 271.9 152 81.6
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 6.5e-71 271.9 303 51.2
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 8.5e-71 271.6 313 49.8
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 1.5e-70 270.8 317 50.5
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 1.5e-70 270.8 310 50.6
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 9.4e-70 268.1 319 49.5
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 9.4e-70 268.1 314 48.1
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 1.6e-69 267.3 310 47.4
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.6e-69 267.3 310 49.0
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 1.6e-69 267.3 310 49.0
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 2.7e-69 266.5 314 47.8
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 3.6e-69 266.2 308 48.7
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 3.6e-69 266.2 312 50.0
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 4.7e-69 265.8 310 48.7
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 4.7e-69 265.8 310 47.1
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 8.0e-69 265.0 311 48.6
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 1.4e-68 264.2 152 79.6
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 2.3e-68 263.5 308 49.0
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 2.3e-68 263.5 305 48.5
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 3.0e-68 263.1 310 49.0
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 3.0e-68 263.1 308 46.4
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 3.0e-68 263.1 310 48.7
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 3.0e-68 263.1 326 49.1
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 3.0e-68 263.1 311 48.6
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 5.2e-68 262.3 311 48.2
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 6.7e-68 261.9 310 47.4
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 6.7e-68 261.9 308 46.1
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 6.7e-68 261.9 316 50.3
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 8.8e-68 261.5 308 48.7
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 8.8e-68 261.5 319 48.0
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 8.8e-68 261.5 321 46.7
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 1.5e-67 260.8 316 47.5
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 1.5e-67 260.8 327 47.7
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 1.5e-67 260.8 319 48.9
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 2.6e-67 260.0 311 46.9
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 5.7e-67 258.8 152 80.9
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 9.7e-67 258.1 307 47.9
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 9.7e-67 258.1 151 79.5
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 9.7e-67 258.1 310 47.4
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 1.3e-66 257.7 308 47.4
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 1.3e-66 257.7 307 48.2
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 1.3e-66 257.7 307 48.2
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 1.7e-66 257.3 307 46.6
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 1.7e-66 257.3 308 48.4
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 1.7e-66 257.3 308 48.4
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 1.7e-66 257.3 308 48.4
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 1.7e-66 257.3 311 46.3
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 2.2e-66 256.9 308 48.1
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 3.7e-66 256.1 306 47.7
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 3.7e-66 256.1 310 48.1
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 3.7e-66 256.1 310 48.4
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 4.8e-66 255.8 308 48.1
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 4.8e-66 255.8 307 47.2
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 1.1e-65 254.6 316 47.8
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 4.1e-65 252.7 151 76.8
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 5.3e-65 252.3 314 46.8
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 7.0e-65 251.9 151 80.8
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 7.0e-65 251.9 310 47.1
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 7.0e-65 251.9 305 47.2
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 3.5e-64 249.6 142 83.8
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 4.5e-64 249.2 152 76.3
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 1.0e-63 248.1 308 45.5
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 2.9e-63 246.5 310 48.1
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.9e-63 246.5 152 75.0
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 8.5e-63 245.0 311 44.7
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 8.5e-63 245.0 311 46.3
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 1.1e-62 244.6 151 74.2
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 1.1e-62 244.6 310 46.1
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 5.5e-62 242.3 312 46.2
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 6.1e-61 238.8 311 44.7
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.8e-60 237.3 311 42.8
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 2.3e-60 236.9 321 47.4
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 2.3e-60 236.9 152 74.3
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 8.8e-60 235.0 314 44.3
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 3.4e-59 233.0 152 74.3
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 2.7e-56 223.4 326 40.5
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 4.5e-56 222.6 308 44.8
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 4.5e-56 222.6 310 44.5
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 1.7e-55 220.7 310 43.9
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.6e-53 214.2 414 35.5
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 1.2e-48 198.0 154 57.8
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 1.6e-48 197.6 153 58.2
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 5.0e-47 192.6 119 74.8
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 3.3e-46 189.9 127 66.9
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 9.5e-46 188.3 152 57.9
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 8.9e-44 181.8 310 38.7
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.2e-41 173.3 180 47.8
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 6.0e-40 169.1 157 52.2
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 1.0e-39 168.3 264 40.9
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 1.1e-38 164.9 125 61.6
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 5.4e-33 146.0 156 46.8
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.3e-30 136.7 87 74.7
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 9.2e-25 118.6 209 38.3
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 1.6e-24 117.9 216 38.0
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 1.7e-23 114.4 155 41.9
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 1.7e-23 114.4 68 75.0
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.0e-23 113.6 209 37.8
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 1.2e-21 108.2 229 34.1
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.4e-20 104.0 209 36.4
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 2.6e-19 100.5 176 31.8
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.4e-19 100.1 108 49.1
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 5.8e-19 99.4 60 81.7
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 9.2e-17 92.0 145 41.4
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.3e-15 88.2 51 76.5
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 2.5e-14 84.0 163 33.7
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.1e-12 77.0 88 47.7
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 1.1e-09 68.6 45 71.1
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 1.9e-09 67.8 47 63.8
MD02G1044000 Malus domestica HOM05D004412 ORTHO05D005316 3.5e-08 63.5 44 59.1
MD06G1023200 Malus domestica HOM05D004412 ORTHO05D005316 3.5e-08 63.5 44 59.1
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 3.0e-07 60.5 47 59.6
Nn1g04358 Nelumbo nucifera HOM05D004412 ORTHO05D005316 1.9e-06 57.8 56 44.6


User provided reference genes

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