Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 1.0e-232 809.7 412 100.0
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 6.8e-216 753.8 412 92.5
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 2.1e-212 742.3 410 91.7
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 8.9e-208 726.9 410 90.2
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 4.2e-197 691.4 410 84.9
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 4.3e-194 681.4 409 82.6
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 3.8e-190 668.3 409 80.0
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 4.9e-190 667.9 409 80.2
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 1.1e-189 666.8 409 79.7
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 1.9e-189 666.0 411 79.8
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 5.4e-189 664.5 410 80.5
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 3.5e-188 661.8 411 80.0
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 6.0e-188 661.0 410 79.8
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.0e-187 660.2 409 78.5
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 1.7e-187 659.4 410 79.3
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 5.1e-187 657.9 409 78.2
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 1.1e-186 656.8 408 80.4
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.1e-186 656.8 409 78.2
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.1e-186 656.8 409 78.0
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 2.5e-186 655.6 409 77.8
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 3.3e-186 655.2 410 77.6
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 2.1e-185 652.5 410 77.6
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 2.8e-185 652.1 408 79.7
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 1.4e-184 649.8 409 78.0
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 1.8e-184 649.4 412 78.6
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 1.8e-184 649.4 409 78.0
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 3.1e-184 648.7 408 78.2
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 4.0e-184 648.3 409 78.5
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 1.5e-183 646.4 409 77.3
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 1.5e-183 646.4 411 78.3
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 2.0e-183 646.0 411 78.3
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 2.6e-183 645.6 412 77.9
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 2.6e-183 645.6 410 77.6
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 3.4e-183 645.2 412 77.7
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 3.4e-183 645.2 411 77.6
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 4.5e-183 644.8 412 78.6
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 4.5e-183 644.8 410 77.6
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 5.8e-183 644.4 411 77.4
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 7.6e-183 644.0 412 77.7
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 7.6e-183 644.0 412 77.4
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 2.2e-182 642.5 411 77.1
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 2.9e-182 642.1 410 77.3
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 3.8e-182 641.7 413 77.5
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 3.8e-182 641.7 411 76.2
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 4.9e-182 641.3 412 77.4
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 4.9e-182 641.3 412 78.9
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 6.4e-182 641.0 412 76.9
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 8.4e-182 640.6 409 76.8
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 1.4e-181 639.8 411 76.2
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 1.9e-181 639.4 413 77.2
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 2.4e-181 639.0 412 78.4
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 2.4e-181 639.0 411 76.9
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 2.4e-181 639.0 412 76.7
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 3.2e-181 638.6 409 75.8
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 4.2e-181 638.3 409 77.3
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 5.4e-181 637.9 409 75.8
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 7.1e-181 637.5 412 78.4
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 1.2e-180 636.7 412 76.2
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 1.6e-180 636.3 413 77.7
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 2.7e-180 635.6 413 77.5
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 4.6e-180 634.8 409 75.8
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 6.0e-180 634.4 412 76.0
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 6.0e-180 634.4 412 76.2
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 6.0e-180 634.4 412 76.2
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 6.0e-180 634.4 408 74.3
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 7.9e-180 634.0 412 76.0
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 7.9e-180 634.0 411 77.1
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 1.0e-179 633.6 412 76.2
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.0e-179 633.6 411 77.1
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 1.0e-179 633.6 413 77.2
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 1.3e-179 633.3 410 77.8
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 1.3e-179 633.3 412 77.2
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 1.8e-179 632.9 412 76.7
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 1.8e-179 632.9 412 75.7
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 3.0e-179 632.1 411 77.4
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 6.7e-179 630.9 411 76.4
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 8.7e-179 630.6 412 75.5
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.1e-178 630.2 411 76.9
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 1.9e-178 629.4 412 76.5
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 4.3e-178 628.2 409 76.5
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 5.6e-178 627.9 409 74.6
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 7.4e-178 627.5 410 75.9
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 1.6e-177 626.3 410 75.1
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 3.7e-177 625.2 410 75.1
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 4.8e-177 624.8 410 76.3
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 8.1e-177 624.0 412 75.5
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 1.4e-176 623.2 411 76.4
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 1.8e-176 622.9 412 76.0
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 4.0e-176 621.7 409 75.6
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 9.0e-176 620.5 411 75.2
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 1.2e-175 620.2 412 75.5
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 4.5e-175 618.2 443 70.7
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 5.8e-175 617.8 408 74.5
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 7.6e-175 617.5 412 74.8
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 1.4e-173 613.2 416 73.6
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 4.2e-173 611.7 411 74.0
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 4.2e-173 611.7 476 66.6
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 3.5e-172 608.6 411 71.8
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 3.0e-171 605.5 408 73.8
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 3.0e-171 605.5 410 74.1
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 1.1e-170 603.6 418 73.0
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 5.7e-170 601.3 505 63.6
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 2.8e-169 599.0 411 73.0
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 4.1e-168 595.1 409 71.9
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 1.0e-166 590.5 417 71.2
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 2.9e-166 589.0 409 70.7
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 3.8e-166 588.6 375 77.1
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 2.5e-165 585.9 409 70.4
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 9.3e-165 583.9 456 64.7
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 1.6e-164 583.2 403 74.7
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 1.6e-161 573.2 466 63.7
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 1.6e-161 573.2 419 70.4
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 5.3e-160 568.2 411 68.1
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 6.9e-160 567.8 429 67.4
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 3.9e-155 552.0 348 79.3
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 1.3e-153 547.0 414 66.7
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 3.6e-148 528.9 409 64.1
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 1.0e-142 510.8 329 76.0
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 3.7e-137 492.3 410 58.3
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 1.8e-136 490.0 409 57.5
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 2.0e-135 486.5 303 78.9
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 3.8e-134 482.3 333 72.1
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 1.5e-133 480.3 409 59.4
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 2.2e-129 466.5 347 68.9
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 1.4e-128 463.8 335 70.1
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 1.2e-122 444.1 420 56.7
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 9.1e-120 434.5 418 55.5
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 1.2e-116 424.1 418 54.8
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 2.3e-110 403.3 234 84.2
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 3.1e-99 366.3 240 74.6
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 1.2e-87 327.8 431 43.9
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.1e-80 304.7 179 84.9
MCO03G089 Micromonas commoda HOM05D004491 ORTHO05D006742 2.2e-73 280.4 388 43.0
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 6.0e-71 272.3 246 60.2
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 2.1e-63 247.3 325 42.5
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 5.5e-56 222.6 181 66.9
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 1.9e-48 197.6 112 86.6
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 9.0e-43 178.7 252 45.6
BcaB02g07304 Brassica carinata HOM05D004491 ORTHO05D091651 3.3e-37 160.2 219 44.3
Zm00001eb098320 Zea mays HOM05D004491 ORTHO05D006742 2.5e-32 144.1 125 57.6
Sopen08g018880 Solanum pennellii HOM05D004491 ORTHO05D006742 3.7e-28 130.2 79 77.2
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 4.8e-28 129.8 85 71.8
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 6.5e-25 119.4 88 68.2
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 1.1e-24 118.6 83 63.9
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 2.5e-24 117.5 74 71.6
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 2.5e-24 117.5 74 71.6
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 1.2e-23 115.2 88 67.0
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 1.2e-23 115.2 88 67.0
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 1.2e-23 115.2 84 70.2
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 4.7e-23 113.2 74 68.9
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 8.8e-22 109.0 88 65.9
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 1.5e-21 108.2 73 72.6
Actinidia28542 Actinidia chinensis HOM05D004491 ORTHO05D057841 9.7e-21 105.5 183 41.5
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 4.5e-18 96.7 66 65.2
HPP92_013688 Vanilla planifolia HOM05D004491 ORTHO05D006742 8.5e-17 92.4 81 59.3
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 9.4e-16 89.0 59 72.9
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 2.1e-15 87.8 65 60.0
BolC6t38020H Brassica oleracea HOM05D004491 ORTHO05D040597 2.6e-13 80.9 113 46.0
C06p28520 Brassica napus HOM05D004491 ORTHO05D040597 3.4e-13 80.5 113 45.1
CAN.G1682.2 Capsicum annuum HOM05D011687 ORTHO05D014163 2.7e-10 70.9 87 48.3
A09p54850 Brassica napus HOM05D004491 ORTHO05D102086 3.6e-07 60.5 125 37.6


User provided reference genes

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