Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 0.0e+00 1077.0 533 100.0
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 3.1e-269 931.4 554 85.7
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 3.2e-226 788.5 558 73.5
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 5.5e-226 787.7 550 73.1
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 7.2e-226 787.3 552 73.6
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 2.1e-225 785.8 545 74.9
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 4.7e-225 784.6 550 73.8
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 3.9e-224 781.6 555 72.1
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 2.6e-223 778.9 561 72.0
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 1.7e-222 776.2 550 73.3
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 2.8e-222 775.4 561 71.8
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 2.8e-222 775.4 542 73.1
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 3.1e-221 771.9 561 71.7
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 4.1e-221 771.5 542 72.3
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 7.0e-221 770.8 545 73.0
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 2.6e-220 768.8 545 73.0
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.6e-220 768.8 545 72.7
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.7e-220 767.3 545 72.7
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.7e-220 767.3 545 72.8
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.3e-219 766.5 545 72.8
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 1.3e-219 766.5 551 72.2
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 2.2e-219 765.8 548 72.1
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 2.2e-219 765.8 547 72.2
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 3.8e-219 765.0 551 71.1
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 3.8e-219 765.0 551 71.3
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 3.2e-218 761.9 546 72.2
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 1.2e-217 760.0 555 71.5
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 8.0e-217 757.3 550 71.1
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 4.0e-216 755.0 553 70.7
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 3.3e-215 751.9 550 70.9
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 2.8e-214 748.8 577 69.0
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 1.1e-213 746.9 546 69.6
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 1.1e-213 746.9 546 70.7
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 4.1e-213 745.0 575 67.5
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 9.1e-213 743.8 541 72.3
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 9.1e-213 743.8 545 70.1
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 1.2e-212 743.4 545 70.1
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 1.6e-212 743.0 431 85.8
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 2.7e-212 742.3 549 69.6
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 3.5e-212 741.9 544 70.4
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 7.7e-212 740.7 526 72.6
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.7e-211 739.6 523 73.6
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 2.2e-211 739.2 546 69.8
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 1.1e-210 736.9 549 69.2
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 3.2e-210 735.3 548 68.8
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 3.2e-210 735.3 558 68.8
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 7.2e-210 734.2 544 70.2
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 3.6e-209 731.9 551 68.8
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 4.0e-208 728.4 550 69.5
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 4.4e-207 724.9 552 67.9
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 9.8e-207 723.8 518 72.2
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 1.3e-206 723.4 550 69.5
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 1.3e-206 723.4 526 71.7
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 2.2e-206 722.6 557 67.1
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 3.7e-206 721.8 553 67.8
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 6.3e-206 721.1 545 68.3
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 6.3e-206 721.1 502 74.3
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 1.4e-205 719.9 552 68.3
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 2.4e-205 719.2 551 67.9
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 4.1e-205 718.4 535 69.3
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 1.6e-204 716.5 560 68.2
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 2.0e-204 716.1 559 66.7
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.7e-204 715.7 554 67.3
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 2.7e-204 715.7 552 67.9
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 5.9e-204 714.5 544 67.5
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 1.3e-203 713.4 546 68.1
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 1.7e-203 713.0 554 67.3
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.9e-203 712.2 545 68.6
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 1.9e-202 709.5 548 67.3
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 4.2e-202 708.4 495 73.9
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 5.5e-202 708.0 534 69.5
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 7.2e-202 707.6 561 66.3
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 2.1e-201 706.1 551 69.0
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 1.0e-200 703.7 545 67.7
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 1.2e-199 700.3 555 66.8
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 1.2e-199 700.3 555 66.8
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 5.7e-199 698.0 625 61.8
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 3.1e-197 692.2 581 64.0
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 4.1e-197 691.8 550 66.7
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 9.2e-197 690.6 569 64.7
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 1.2e-196 690.3 531 66.5
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 1.0e-195 687.2 554 65.3
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 5.0e-195 684.9 516 68.8
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 1.8e-192 676.4 552 64.9
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 3.1e-192 675.6 549 65.2
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 6.8e-192 674.5 548 64.2
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 1.7e-190 669.8 548 65.0
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 4.6e-188 661.8 531 66.5
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 1.2e-185 653.7 508 68.1
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 2.1e-185 652.9 508 68.1
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 5.2e-184 648.3 487 69.4
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 1.3e-182 643.7 538 66.2
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 3.7e-182 642.1 553 61.8
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 6.6e-179 631.3 438 74.2
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 4.3e-178 628.6 546 61.2
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 8.1e-177 624.4 417 76.7
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 8.9e-176 620.9 547 61.2
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 1.3e-171 607.1 371 81.9
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 2.5e-170 602.8 371 81.1
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 3.3e-170 602.4 566 58.3
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 7.8e-164 581.3 566 58.0
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 1.1e-162 577.4 369 78.3
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 3.3e-162 575.9 531 57.4
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 1.8e-160 570.1 361 79.5
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 1.3e-158 563.9 363 79.1
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 1.7e-155 553.5 573 52.9
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 2.8e-153 546.2 520 57.9
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 1.5e-151 540.4 491 61.3
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 7.6e-151 538.1 516 57.4
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 2.4e-149 533.1 514 56.6
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 7.4e-146 521.5 521 54.3
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 3.4e-143 512.7 338 78.7
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 1.1e-141 507.7 391 68.3
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 2.7e-140 503.1 547 51.6
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 7.9e-140 501.5 513 54.8
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 7.4e-138 495.0 512 53.5
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 1.8e-136 490.3 375 69.3
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 4.2e-133 479.2 574 47.9
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 3.7e-129 466.1 398 63.8
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 2.9e-126 456.4 357 70.0
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 5.7e-122 442.2 330 69.1
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 1.7e-121 440.7 527 47.2
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 5.0e-118 429.1 534 46.6
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 6.7e-115 418.7 344 67.7
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 4.8e-113 412.5 324 67.9
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.3e-105 387.9 542 46.5
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 9.8e-98 361.7 295 63.7
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 8.5e-94 348.6 431 45.0
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.7e-89 333.2 317 59.3
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 4.1e-80 303.1 263 62.0
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 7.5e-66 255.8 205 69.8
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 1.2e-60 238.4 284 48.9
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 5.8e-58 229.6 198 60.6
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 1.3e-57 228.4 431 35.0
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.2e-55 221.9 255 49.8
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 3.5e-55 220.3 167 67.1
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 2.1e-52 211.1 167 64.1
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 4.2e-48 196.8 167 62.3
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 4.2e-48 196.8 344 36.9
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 4.0e-43 180.3 167 58.7
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 1.9e-40 171.4 365 35.1
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 6.0e-39 166.4 193 51.8
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 3.8e-33 147.1 137 56.2
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 5.5e-32 143.3 141 62.4
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.7e-31 141.0 137 54.0
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 1.9e-21 108.2 105 56.2
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 7.4e-21 106.3 370 25.7
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 1.4e-16 92.0 65 70.8
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 1.9e-16 91.7 457 24.7
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 2.3e-14 84.7 72 61.1
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 3.7e-12 77.4 93 50.5
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 9.0e-11 72.8 42 81.0
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 2.2e-09 68.2 53 56.6
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 8.5e-09 66.2 74 44.6
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 2.5e-08 64.7 33 90.9
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 6.1e-07 60.1 37 78.4
CARHR263810 Cardamine hirsuta HOM05D004730 ORTHO05D005705 5.1e-06 57.0 111 38.7


User provided reference genes

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