Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0128800 Salix brachista HOM05D002625 ORTHO05D050513 1.5e-42 175.6 83 100.0
CSS0048071 Camellia sinensis var. sinensis HOM05D002625 ORTHO05D002977 2.0e-10 68.9 80 51.2
HPP92_022225 Vanilla planifolia HOM05D002625 ORTHO05D002977 5.9e-10 67.4 84 51.2
Potri.014G087600 Populus trichocarpa HOM05D002625 ORTHO05D002977 1.0e-09 66.6 84 52.4
CiPaw.02G033300 Carya illinoinensis HOM05D002625 ORTHO05D002977 1.3e-09 66.2 89 46.1
Actinidia10045 Actinidia chinensis HOM05D002625 ORTHO05D002977 8.5e-09 63.5 80 47.5
arahy.Tifrunner.gnm1.ann1.F051D6 Arachis hypogaea HOM05D002625 ORTHO05D002977 8.5e-09 63.5 83 45.8
arahy.Tifrunner.gnm1.ann1.QMK3CD Arachis hypogaea HOM05D002625 ORTHO05D002977 8.5e-09 63.5 83 45.8
CSS0003657 Camellia sinensis var. sinensis HOM05D002625 ORTHO05D002977 1.1e-08 63.2 83 45.8
CSS0039015 Camellia sinensis var. sinensis HOM05D002625 ORTHO05D002977 1.1e-08 63.2 83 45.8
Glyma.05G209900 Glycine max HOM05D002625 ORTHO05D002977 1.1e-08 63.2 30 93.3
Phvul.002G291700 Phaseolus vulgaris HOM05D002625 ORTHO05D002977 1.1e-08 63.2 30 93.3
HPP92_007336 Vanilla planifolia HOM05D002625 ORTHO05D002977 1.1e-08 63.2 80 48.8
Medtr8g098735 Medicago truncatula HOM05D002625 ORTHO05D002977 1.5e-08 62.8 30 90.0
Actinidia20886 Actinidia chinensis HOM05D002625 ORTHO05D002977 1.9e-08 62.4 80 47.5
QL12p032345 Quercus lobata HOM05D002625 ORTHO05D002977 1.9e-08 62.4 79 45.6
CiPaw.11G132400 Carya illinoinensis HOM05D002625 ORTHO05D002977 2.5e-08 62.0 78 47.4
Glyma.08G016600 Glycine max HOM05D002625 ORTHO05D002977 2.5e-08 62.0 30 90.0
GSVIVG01026997001 Vitis vinifera HOM05D002625 ORTHO05D002977 2.5e-08 62.0 76 50.0
Aa31LG6G6660 Aethionema arabicum HOM05D002625 ORTHO05D002977 3.2e-08 61.6 81 50.6
Lalb_Chr05g0224611 Lupinus albus HOM05D002625 ORTHO05D002977 3.2e-08 61.6 78 50.0
Manes.01G059200 Manihot esculenta HOM05D002625 ORTHO05D002977 3.2e-08 61.6 78 47.4
Manes.02G019200 Manihot esculenta HOM05D002625 ORTHO05D002977 3.2e-08 61.6 30 90.0
VMungo0251G0855 Vigna mungo HOM05D002625 ORTHO05D002977 3.2e-08 61.6 30 90.0
Lalb_Chr05g0211771 Lupinus albus HOM05D002625 ORTHO05D002977 4.2e-08 61.2 78 44.9
TWI60G0865 Tripterygium wilfordii HOM05D002625 ORTHO05D002977 4.2e-08 61.2 78 48.7
Sabra01G0076100 Salix brachista HOM05D002625 ORTHO05D002977 5.5e-08 60.8 75 45.3
Atru.chr9.2151 Acer truncatum HOM05D002625 ORTHO05D002977 9.4e-08 60.1 85 48.2
CSS0023146 Camellia sinensis var. sinensis HOM05D002625 ORTHO05D002977 9.4e-08 60.1 83 45.8
CAN.G1265.1 Capsicum annuum HOM05D002625 ORTHO05D002977 1.2e-07 59.7 30 90.0
HanXRQChr03g0085931 Helianthus annuus HOM05D002625 ORTHO05D002977 1.2e-07 59.7 79 48.1
Nitab4.5_0007313g0020 Nicotiana tabacum HOM05D002625 ORTHO05D002977 1.2e-07 59.7 30 90.0
Solyc12g056210.3 Solanum lycopersicum HOM05D002625 ORTHO05D002977 1.2e-07 59.7 30 90.0
Sopen12g028720 Solanum pennellii HOM05D002625 ORTHO05D002977 1.2e-07 59.7 30 90.0
Potri.003G130700 Populus trichocarpa HOM05D002625 ORTHO05D002977 1.6e-07 59.3 30 86.7
Rhsim07G0012900 Rhododendron simsii HOM05D002625 ORTHO05D002977 1.6e-07 59.3 79 44.3
Lj4g0007440 Lotus japonicus HOM05D002625 ORTHO05D002977 2.1e-07 58.9 30 83.3
Manes.05G031800 Manihot esculenta HOM05D002625 ORTHO05D002977 2.1e-07 58.9 30 83.3
Cpa.g.sc180.15 Carica papaya HOM05D002625 ORTHO05D002977 2.7e-07 58.5 78 47.4
Peaxi162Scf00117g01731 Petunia axillaris HOM05D002625 ORTHO05D002977 2.7e-07 58.5 30 86.7
Sc22g0005430 Simmondsia chinensis HOM05D002625 ORTHO05D002977 2.7e-07 58.5 80 46.2
PGSC0003DMG400004981 Solanum tuberosum HOM05D002625 ORTHO05D002977 2.7e-07 58.5 30 86.7
MSTRG.25624 Avicennia marina HOM05D002625 ORTHO05D002977 3.6e-07 58.2 30 86.7
MSTRG.11968 Avicennia marina HOM05D002625 ORTHO05D002977 4.7e-07 57.8 87 42.5
Ciclev10021784m.g Citrus clementina HOM05D002625 ORTHO05D002977 4.7e-07 57.8 97 39.2
Potri.001G101100 Populus trichocarpa HOM05D002625 ORTHO05D002977 4.7e-07 57.8 74 48.6
Sed0016833 Sechium edule HOM05D002625 ORTHO05D002977 4.7e-07 57.8 28 85.7
PGSC0003DMG400000053 Solanum tuberosum HOM05D002625 ORTHO05D002977 4.7e-07 57.8 81 45.7
Migut.A00748 Erythranthe guttata HOM05D002625 ORTHO05D002977 6.1e-07 57.4 30 83.3
Thhalv10026035m.g Eutrema salsugineum HOM05D002625 ORTHO05D002977 6.1e-07 57.4 30 86.7
Gohir.D12G232200 Gossypium hirsutum HOM05D002625 ORTHO05D002977 6.1e-07 57.4 30 86.7
Gorai.008G248500 Gossypium raimondii HOM05D002625 ORTHO05D002977 6.1e-07 57.4 30 86.7
Nitab4.5_0003043g0020 Nicotiana tabacum HOM05D002625 ORTHO05D002977 6.1e-07 57.4 77 45.5
Ah.12g051770 Amaranthus hybridus HOM05D002625 ORTHO05D002977 8.0e-07 57.0 30 90.0
AUR62027262 Chenopodium quinoa HOM05D002625 ORTHO05D002977 8.0e-07 57.0 30 90.0
Glyma.01G221200 Glycine max HOM05D002625 ORTHO05D002977 8.0e-07 57.0 30 83.3
PGR031G2871 Punica granatum HOM05D002625 ORTHO05D002977 8.0e-07 57.0 30 83.3
Ca_10938_v3 Cicer arietinum L. HOM05D002625 ORTHO05D002977 1.0e-06 56.6 77 42.9
Duzib068G1381 Durio zibethinus HOM05D002625 ORTHO05D002977 1.0e-06 56.6 30 86.7
Duzib084G1145 Durio zibethinus HOM05D002625 ORTHO05D002977 1.0e-06 56.6 30 86.7
Gohir.D08G136500 Gossypium hirsutum HOM05D002625 ORTHO05D002977 1.0e-06 56.6 30 86.7
Gorai.004G139700 Gossypium raimondii HOM05D002625 ORTHO05D002977 1.0e-06 56.6 30 86.7
Potri.002G161801 Populus trichocarpa HOM05D002625 ORTHO05D050513 1.0e-06 56.6 36 83.3
RcHm_v2.0_Chr1g0356841 Rosa chinensis HOM05D002625 ORTHO05D002977 1.0e-06 56.6 80 43.8
MBI04_g35058_MAGBIO Magnolia biondii HOM05D002625 ORTHO05D002977 1.4e-06 56.2 83 43.4
Sp7g21370 Schrenkiella parvula HOM05D002625 ORTHO05D002977 1.4e-06 56.2 78 46.2
Thecc.03G283000 Theobroma cacao HOM05D002625 ORTHO05D002977 1.4e-06 56.2 86 48.8
Haze_15538 Corylus avellana HOM05D002625 ORTHO05D002977 1.8e-06 55.8 82 45.1
Lsat_1_v5_gn_6_85341 Lactuca sativa HOM05D002625 ORTHO05D002977 1.8e-06 55.8 30 83.3
Os03g0123600 Oryza sativa ssp. japonica HOM05D002625 ORTHO05D002977 1.8e-06 55.8 30 86.7
Sopen01g038650 Solanum pennellii HOM05D002625 ORTHO05D002977 1.8e-06 55.8 79 45.6
TPR.G12898 Trifolium pratense HOM05D002625 ORTHO05D002977 1.8e-06 55.8 77 44.2
Phvul.002G158600 Phaseolus vulgaris HOM05D002625 ORTHO05D002977 2.3e-06 55.5 30 80.0
Hund11450 Selenicereus undatus HOM05D002625 ORTHO05D002977 2.3e-06 55.5 30 83.3
Solyc01g094870.3 Solanum lycopersicum HOM05D002625 ORTHO05D002977 2.3e-06 55.5 79 45.6
THA.LOC104806418 Tarenaya hassleriana HOM05D002625 ORTHO05D002977 2.3e-06 55.5 30 83.3
TWI81G0702 Tripterygium wilfordii HOM05D002625 ORTHO05D002977 2.3e-06 55.5 78 46.2
TAR629G0130 Trochodendron aralioides HOM05D002625 ORTHO05D002977 2.3e-06 55.5 90 42.2
Aqoxy7G00255 Aquilegia oxysepala HOM05D002625 ORTHO05D002977 3.0e-06 55.1 78 44.9
VMungo1215G0754 Vigna mungo HOM05D002625 ORTHO05D002977 3.0e-06 55.1 30 80.0
ATR0661G245 Amborella trichopoda HOM05D002625 ORTHO05D002977 4.0e-06 54.7 30 76.7
Rhsim02G0234200 Rhododendron simsii HOM05D002625 ORTHO05D002977 4.0e-06 54.7 30 83.3
EL10Ac5g12805 Beta vulgaris HOM05D002625 ORTHO05D002977 5.2e-06 54.3 80 47.5
BcaNung04481 Brassica carinata HOM05D002625 ORTHO05D002977 5.2e-06 54.3 78 46.2
Carub.0007s1766 Capsella rubella HOM05D002625 ORTHO05D002977 5.2e-06 54.3 30 83.3
Gohir.A12G231100 Gossypium hirsutum HOM05D002625 ORTHO05D002977 5.2e-06 54.3 30 83.3
SGA_v2.0_scaffold96G28923 Striga asiatica HOM05D002625 ORTHO05D002977 5.2e-06 54.3 76 48.7
AL7G29990 Arabidopsis lyrata HOM05D002625 ORTHO05D002977 6.8e-06 53.9 84 44.0
CAN.G78.101 Capsicum annuum HOM05D002625 ORTHO05D002977 6.8e-06 53.9 81 44.4
Cc08_g15030 Coffea canephora HOM05D002625 ORTHO05D002977 6.8e-06 53.9 87 41.4
Haze_08816 Corylus avellana HOM05D002625 ORTHO05D002977 6.8e-06 53.9 84 46.4
Duzib133G1440 Durio zibethinus HOM05D002625 ORTHO05D002977 6.8e-06 53.9 81 45.7
Duzib205G1176 Durio zibethinus HOM05D002625 ORTHO05D002977 6.8e-06 53.9 77 46.8
Nitab4.5_0006942g0030 Nicotiana tabacum HOM05D002625 ORTHO05D002977 6.8e-06 53.9 78 44.9
Peaxi162Scf00020g01026 Petunia axillaris HOM05D002625 ORTHO05D002977 6.8e-06 53.9 30 80.0
vmacro23483 Vaccinium macrocarpon HOM05D002625 ORTHO05D002977 6.8e-06 53.9 78 47.4
Zm00001eb403710 Zea mays HOM05D002625 ORTHO05D002977 6.8e-06 53.9 86 47.7
BcaC09g50994 Brassica carinata HOM05D002625 ORTHO05D002977 8.8e-06 53.5 28 89.3
BcaNung01048 Brassica carinata HOM05D002625 ORTHO05D002977 8.8e-06 53.5 28 89.3
A01p14690 Brassica napus HOM05D002625 ORTHO05D002977 8.8e-06 53.5 28 89.3
A03p54330 Brassica napus HOM05D002625 ORTHO05D002977 8.8e-06 53.5 28 89.3
C01p18200 Brassica napus HOM05D002625 ORTHO05D002977 8.8e-06 53.5 28 89.3
C07p52730 Brassica napus HOM05D002625 ORTHO05D002977 8.8e-06 53.5 28 89.3
BolC1t01746H Brassica oleracea HOM05D002625 ORTHO05D002977 8.8e-06 53.5 28 89.3
BolC7t45773H Brassica oleracea HOM05D002625 ORTHO05D002977 8.8e-06 53.5 28 89.3
BraA01t01409Z Brassica rapa HOM05D002625 ORTHO05D002977 8.8e-06 53.5 28 89.3
BraA03t14495Z Brassica rapa HOM05D002625 ORTHO05D002977 8.8e-06 53.5 28 89.3
AUR62010716 Chenopodium quinoa HOM05D002625 ORTHO05D002977 8.8e-06 53.5 30 83.3
ECA246G2689 Erigeron canadensis HOM05D002625 ORTHO05D002977 8.8e-06 53.5 82 47.6
Eucgr.D02309 Eucalyptus grandis HOM05D002625 ORTHO05D002977 8.8e-06 53.5 80 43.8
Lsat_1_v5_gn_6_5060 Lactuca sativa HOM05D002625 ORTHO05D002977 8.8e-06 53.5 30 80.0
Nitab4.5_0014843g0030 Nicotiana tabacum HOM05D002625 ORTHO05D002977 8.8e-06 53.5 79 46.8
Peaxi162Scf00585g00010 Petunia axillaris HOM05D002625 ORTHO05D002977 8.8e-06 53.5 80 46.2
Sabra03G0092900 Salix brachista HOM05D002625 ORTHO05D002977 8.8e-06 53.5 80 42.5
vmacro11393 Vaccinium macrocarpon HOM05D003441 ORTHO05D004516 8.8e-06 53.5 78 41.0


User provided reference genes

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