Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0095100 Salix brachista HOM05D004205 ORTHO05D004977 2.7e-75 285.4 164 100.0
Sabra04G0014500 Salix brachista HOM05D000022 ORTHO05D000306 1.4e-66 256.5 164 93.9
Sabra11G0035300 Salix brachista HOM05D004205 ORTHO05D004977 1.1e-47 193.7 154 80.5
Potri.011G051300 Populus trichocarpa HOM05D004205 ORTHO05D004977 4.1e-39 165.2 152 61.8
Sabra04G0026200 Salix brachista HOM05D004205 ORTHO05D004977 5.4e-31 138.3 151 53.6
Potri.004G042100 Populus trichocarpa HOM05D004205 ORTHO05D004977 5.0e-29 131.7 152 53.9
Manes.17G044200 Manihot esculenta HOM05D004205 ORTHO05D004977 4.4e-17 92.0 65 61.5
Atru.chr10.1899 Acer truncatum HOM05D004205 ORTHO05D004977 3.2e-15 85.9 124 41.1
Ciclev10014995m.g Citrus clementina HOM05D004205 ORTHO05D004977 3.9e-13 79.0 124 41.1
Gohir.A09G072300 Gossypium hirsutum HOM05D004205 ORTHO05D004977 5.1e-13 78.6 65 56.9
Duzib235G1315 Durio zibethinus HOM05D004205 ORTHO05D004977 8.7e-13 77.8 62 61.3
Gohir.D09G072000 Gossypium hirsutum HOM05D004205 ORTHO05D004977 1.1e-12 77.4 65 55.4
Gorai.006G087000 Gossypium raimondii HOM05D004205 ORTHO05D004977 2.5e-12 76.3 65 55.4
TAR629G3452 Trochodendron aralioides HOM05D004205 ORTHO05D004977 7.3e-12 74.7 72 51.4
Eucgr.E03316 Eucalyptus grandis HOM05D004205 ORTHO05D004977 1.2e-11 73.9 114 38.6
TWI38G1735 Tripterygium wilfordii HOM05D004205 ORTHO05D004977 4.7e-11 72.0 69 49.3
Cfa000433 Carpinus fangiana HOM05D001170 ORTHO05D006602 1.4e-10 70.5 115 40.0
Prupe.4G045500 Prunus persica HOM05D004205 ORTHO05D004977 2.4e-10 69.7 61 55.7
Manes.03G112016 Manihot esculenta HOM05D004205 ORTHO05D004977 3.1e-10 69.3 65 49.2
Lalb_Chr20g0121931 Lupinus albus HOM05D004205 ORTHO05D004977 4.0e-10 68.9 118 36.4
Psat1g205560 Pisum sativum HOM05D004205 ORTHO05D004977 4.0e-10 68.9 129 38.0
Dinv04315 Davidia involucrata HOM05D004205 ORTHO05D004977 5.2e-10 68.6 53 58.5
Manes.03G112100 Manihot esculenta HOM05D004205 ORTHO05D004977 5.2e-10 68.6 65 49.2
Cpa.g.sc27.52 Carica papaya HOM05D004205 ORTHO05D004977 1.2e-09 67.4 160 36.9
Cpa.g.sc80.45 Carica papaya HOM05D004205 ORTHO05D004977 1.2e-09 67.4 147 30.6
QL05p039984 Quercus lobata HOM05D004205 ORTHO05D004977 2.0e-09 66.6 136 37.5
Oeu011680.1 Olea europaea HOM05D004205 ORTHO05D004977 4.4e-09 65.5 69 47.8
Carub.0003s1511 Capsella rubella HOM05D004205 ORTHO05D004977 5.8e-09 65.1 72 43.1
Atru.chr2.2712 Acer truncatum HOM05D004205 ORTHO05D004977 7.6e-09 64.7 66 45.5
Aa31LG8G2620 Aethionema arabicum HOM05D004205 ORTHO05D004977 1.3e-08 63.9 57 52.6
Haze_06483 Corylus avellana HOM05D004205 ORTHO05D004977 1.3e-08 63.9 143 35.7
Lj6g0013418 Lotus japonicus HOM05D004205 ORTHO05D004977 1.3e-08 63.9 119 33.6
Nn1g06581 Nelumbo nucifera HOM05D004205 ORTHO05D004977 1.3e-08 63.9 57 56.1
AL230U10030 Arabidopsis lyrata HOM05D004205 ORTHO05D004977 1.7e-08 63.5 52 51.9
arahy.Tifrunner.gnm1.ann1.R761X6 Arachis hypogaea HOM05D004205 ORTHO05D004977 1.7e-08 63.5 129 33.3
GSVIVG01002063001 Vitis vinifera HOM05D004205 ORTHO05D004977 1.7e-08 63.5 149 35.6
Dinv08307 Davidia involucrata HOM05D004205 ORTHO05D004977 2.2e-08 63.2 60 48.3
Dinv20162 Davidia involucrata HOM05D004205 ORTHO05D004977 2.2e-08 63.2 60 48.3
AL3G27930 Arabidopsis lyrata HOM05D004205 ORTHO05D004977 2.9e-08 62.8 52 50.0
AT3G15390 Arabidopsis thaliana HOM05D004205 ORTHO05D004977 2.9e-08 62.8 52 50.0
Ciclev10010785m.g Citrus clementina HOM05D004205 ORTHO05D004977 2.9e-08 62.8 47 59.6
Medtr2g013430 Medicago truncatula HOM05D004205 ORTHO05D004977 2.9e-08 62.8 118 37.3
Sp3g13640 Schrenkiella parvula HOM05D004205 ORTHO05D004977 2.9e-08 62.8 52 48.1
COL.COLO4_31489 Corchorus olitorius HOM05D004205 ORTHO05D004977 3.8e-08 62.4 44 63.6
Actinidia05372 Actinidia chinensis HOM05D004205 ORTHO05D004977 4.9e-08 62.0 53 56.6
BcaC09g48505 Brassica carinata HOM05D004205 ORTHO05D004977 4.9e-08 62.0 60 46.7
C01p49060 Brassica napus HOM05D004205 ORTHO05D004977 4.9e-08 62.0 60 46.7
BolC1t04869H Brassica oleracea HOM05D004205 ORTHO05D004977 4.9e-08 62.0 60 46.7
BraA01t03912Z Brassica rapa HOM05D004205 ORTHO05D004977 4.9e-08 62.0 60 46.7
Thhalv10020594m.g Eutrema salsugineum HOM05D004205 ORTHO05D004977 4.9e-08 62.0 53 50.9
arahy.Tifrunner.gnm1.ann1.USTZ5W Arachis hypogaea HOM05D004205 ORTHO05D001463 6.4e-08 61.6 119 32.8
Gohir.D10G025800 Gossypium hirsutum HOM05D004205 ORTHO05D004977 6.4e-08 61.6 45 64.4
Gorai.011G027100 Gossypium raimondii HOM05D004205 ORTHO05D004977 6.4e-08 61.6 45 64.4
Potri.001G401900 Populus trichocarpa HOM05D004205 ORTHO05D004977 6.4e-08 61.6 56 53.6
Cfa020556 Carpinus fangiana HOM05D004205 ORTHO05D004977 8.4e-08 61.2 63 49.2
THA.LOC104818068 Tarenaya hassleriana HOM05D004205 ORTHO05D004977 8.4e-08 61.2 67 47.8
A01p38730 Brassica napus HOM05D004205 ORTHO05D004977 1.1e-07 60.8 60 45.0
Ciclev10027211m.g Citrus clementina HOM05D004205 ORTHO05D004977 1.1e-07 60.8 119 37.0
Oeu019333.1 Olea europaea HOM05D004205 ORTHO05D004977 1.1e-07 60.8 54 51.9
Prupe.4G184000 Prunus persica HOM05D004205 ORTHO05D004977 1.1e-07 60.8 59 54.2
BcaB04g20928 Brassica carinata HOM05D004205 ORTHO05D004977 1.9e-07 60.1 60 46.7
Phvul.006G186500 Phaseolus vulgaris HOM05D004205 ORTHO05D004977 2.4e-07 59.7 65 44.6
Gohir.A10G025100 Gossypium hirsutum HOM05D004205 ORTHO05D004977 3.2e-07 59.3 44 61.4
QL08p020409 Quercus lobata HOM05D004205 ORTHO05D004977 3.2e-07 59.3 68 50.0
Gohir.A01G065100 Gossypium hirsutum HOM05D004205 ORTHO05D004977 4.2e-07 58.9 65 44.6
TPR.G29053 Trifolium pratense HOM05D004205 ORTHO05D004977 4.2e-07 58.9 118 37.3
Ciclev10027317m.g Citrus clementina HOM05D004205 ORTHO05D004977 5.4e-07 58.5 56 53.6
Gohir.D01G052500 Gossypium hirsutum HOM05D004205 ORTHO05D004977 7.1e-07 58.2 65 44.6
Gorai.002G072300 Gossypium raimondii HOM05D004205 ORTHO05D004977 7.1e-07 58.2 65 44.6
CSS0032517 Camellia sinensis var. sinensis HOM05D004205 ORTHO05D004977 2.1e-06 56.6 53 54.7
Thecc.06G189300 Theobroma cacao HOM05D004205 ORTHO05D004977 2.1e-06 56.6 43 55.8
Gorai.002G215200 Gossypium raimondii HOM05D004205 ORTHO05D004977 4.6e-06 55.5 55 50.9
PGR004G2376 Punica granatum HOM05D004205 ORTHO05D004977 6.0e-06 55.1 65 46.2
Thecc.07G080400 Theobroma cacao HOM05D004205 ORTHO05D004977 6.0e-06 55.1 58 43.1
VMungo0540G0305 Vigna mungo HOM05D004205 ORTHO05D004977 6.0e-06 55.1 47 53.2
Haze_09457 Corylus avellana HOM05D004205 ORTHO05D004977 7.8e-06 54.7 63 47.6


User provided reference genes

Program Settings