Gene: AT3G15390

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G15390
  • Transcript Identifier AT3G15390.1
  • Gene Type Coding gene
  • Location Chr3 : 5196689-5199531 : negative

Gene Family Information

  • ID HOM05D004205
  • #Genes/#Species 168/89
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G15390.1
  • symbol SDE5
  • uniprot Q9LUQ3

Descriptions

  • Description silencing defective 5
  • Computational description silencing defective 5 (SDE5); CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1771 (InterPro:IPR013899); BEST Arabidopsis thaliana protein match is: smr (Small MutS Related) domain-containing protein (TAIR:AT5G58720.1); Has 92 Blast hits to 92 proteins in 30 species: Archae - 0; Bacteria - 4; Metazoa - 16; Fungi - 4; Plants - 47; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010267
TAS
Gene Ontologyproduction of ta-siRNAs involved in RNA interference1
GO:0006952
IEA
GOA Databasedefense response
GO:0031047
IEA
GOA Databasegene silencing by RNA

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003674
ND
Gene Ontologymolecular_function

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0009507
ISM
Gene Ontologychloroplast
GO:0005829
HDA
Gene Ontologycytosol2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013899 Domain of unknown function DUF1771
Mapman id Description
16.10.1.5 RNA processing.messenger ribonucleoparticle (mRNP) export.TREX/THO mRNP trafficking complex.regulatory mRNA export factor (SDE5)