Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 0.0e+00 1374.0 685 100.0
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 8.0e-278 960.3 561 87.9
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 6.2e-230 801.2 584 72.1
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 6.0e-225 784.6 572 70.8
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 3.3e-223 778.9 562 71.5
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 4.3e-223 778.5 538 74.0
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 5.6e-223 778.1 573 70.7
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 9.6e-223 777.3 573 70.5
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 2.8e-222 775.8 573 70.3
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 8.1e-222 774.2 573 70.5
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 2.4e-221 772.7 511 75.9
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 3.1e-221 772.3 557 70.7
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 2.6e-220 769.2 568 70.1
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 5.8e-220 768.1 582 69.2
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 9.9e-220 767.3 558 71.7
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 6.4e-219 764.6 512 75.4
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 1.9e-218 763.1 510 75.9
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 1.9e-218 763.1 556 70.3
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 5.4e-218 761.5 564 69.1
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 9.3e-218 760.8 601 66.6
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 1.2e-217 760.4 568 69.5
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 1.2e-217 760.4 564 69.5
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 1.2e-217 760.4 567 69.5
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.6e-217 760.0 513 74.3
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 1.6e-217 760.0 575 68.9
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.6e-217 760.0 562 68.7
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 2.1e-217 759.6 582 69.1
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 2.7e-217 759.2 599 66.8
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 2.7e-217 759.2 514 73.9
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 4.6e-217 758.4 573 68.9
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 4.6e-217 758.4 553 70.0
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 6.0e-217 758.1 509 73.9
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 7.8e-217 757.7 509 74.1
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 1.7e-216 756.5 514 73.7
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 2.3e-216 756.1 565 69.0
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 3.0e-216 755.7 542 70.7
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 3.0e-216 755.7 588 67.0
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 3.0e-216 755.7 563 68.6
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 3.9e-216 755.4 512 73.0
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 5.1e-216 755.0 578 68.7
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 6.6e-216 754.6 576 68.2
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 6.6e-216 754.6 573 67.9
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 8.7e-216 754.2 581 67.5
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.1e-215 753.8 513 73.3
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 1.1e-215 753.8 576 68.1
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.5e-215 753.4 575 67.8
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 1.9e-215 753.1 566 67.8
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 1.9e-215 753.1 512 73.2
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 2.5e-215 752.7 546 70.1
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 2.5e-215 752.7 570 67.7
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 2.5e-215 752.7 512 73.6
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 3.3e-215 752.3 571 66.2
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 4.3e-215 751.9 557 69.1
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 7.3e-215 751.1 514 72.6
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 2.8e-214 749.2 564 67.9
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 2.8e-214 749.2 510 73.5
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 8.1e-214 747.7 570 67.9
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 1.1e-213 747.3 556 68.5
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 2.4e-213 746.1 511 72.8
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 3.1e-213 745.7 554 69.3
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 9.0e-213 744.2 567 67.5
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 3.4e-212 742.3 540 70.9
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 7.6e-212 741.1 511 72.0
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 7.6e-212 741.1 531 70.6
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 7.6e-212 741.1 567 67.0
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 9.9e-212 740.7 564 67.4
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 1.7e-211 740.0 562 67.3
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 2.2e-211 739.6 511 72.0
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 2.9e-211 739.2 567 67.4
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 4.9e-211 738.4 509 72.5
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 6.4e-211 738.0 569 67.5
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 8.4e-211 737.6 509 71.7
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 1.4e-210 736.9 515 72.2
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 1.9e-210 736.5 513 71.7
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 2.4e-210 736.1 565 67.4
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 2.4e-210 736.1 600 64.8
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 2.4e-210 736.1 563 67.3
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 7.1e-210 734.6 562 67.3
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 7.1e-210 734.6 592 65.4
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 9.3e-210 734.2 565 66.9
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 9.3e-210 734.2 509 72.5
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 9.3e-210 734.2 572 65.9
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 1.6e-209 733.4 569 67.3
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 1.6e-209 733.4 503 73.6
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 2.7e-209 732.6 523 70.2
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 7.9e-209 731.1 563 67.7
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 1.0e-208 730.7 524 70.4
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 1.8e-208 729.9 587 65.6
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 2.3e-208 729.6 512 71.1
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 3.0e-208 729.2 507 71.2
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 2.5e-207 726.1 511 71.0
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 5.6e-207 724.9 584 64.9
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 7.4e-207 724.5 559 66.4
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 2.1e-206 723.0 622 62.4
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 8.1e-206 721.1 509 71.5
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 1.1e-205 720.7 518 69.5
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 1.1e-202 710.7 572 64.5
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 7.9e-201 704.5 570 64.9
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 3.3e-199 699.1 516 69.0
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 5.6e-199 698.4 572 64.9
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 7.4e-199 698.0 525 67.0
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 1.1e-197 694.1 511 68.9
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 2.5e-194 682.9 508 65.7
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 2.2e-190 669.8 514 64.0
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 3.7e-190 669.1 470 71.9
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 9.0e-189 664.5 509 67.0
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 1.2e-188 664.1 568 59.2
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 1.2e-188 664.1 513 66.3
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 7.7e-188 661.4 465 70.8
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 2.5e-186 656.4 510 63.1
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 3.2e-186 656.0 418 79.2
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 3.6e-185 652.5 486 71.8
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 1.8e-184 650.2 574 62.9
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 3.0e-184 649.4 477 72.1
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 3.9e-184 649.0 510 62.5
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.5e-183 647.1 513 65.3
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 4.5e-180 635.6 481 67.6
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 3.0e-176 622.9 423 73.5
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 3.3e-175 619.4 431 74.5
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 4.8e-174 615.5 504 62.9
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 2.4e-173 613.2 423 72.3
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 9.1e-173 611.3 510 64.5
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 5.0e-171 605.5 723 48.3
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 6.5e-171 605.1 503 60.0
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 1.7e-166 590.5 529 59.7
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 2.5e-162 576.6 503 62.4
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 1.2e-161 574.3 504 59.5
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 8.8e-152 541.6 375 74.4
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 2.8e-145 520.0 477 60.2
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 1.3e-115 421.4 410 59.0
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 2.5e-106 390.6 356 61.0
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 1.2e-103 381.7 247 75.7
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 2.3e-91 340.9 342 53.8
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 6.9e-88 329.3 285 62.5
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 1.0e-83 315.5 499 36.5
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 4.3e-82 310.1 239 66.5
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 1.8e-80 304.7 508 35.6
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 2.9e-78 297.4 226 66.4
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 5.1e-75 286.6 502 35.1
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 5.9e-63 246.5 136 86.8
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 1.4e-59 235.3 432 37.0
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 3.1e-56 224.2 194 61.9
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 8.0e-52 209.5 182 59.9
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 4.4e-50 203.8 203 55.2
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 1.3e-46 192.2 208 51.0
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 3.6e-44 184.1 100 89.0
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 6.3e-41 173.3 92 91.3
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 3.5e-39 167.5 144 56.9
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 6.5e-38 163.3 135 56.3
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 5.2e-35 153.7 83 85.5
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.5e-34 152.1 427 26.7
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 5.7e-34 150.2 299 34.4
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 1.3e-33 149.1 134 59.0
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 1.5e-29 135.6 93 74.2
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 5.2e-27 127.1 124 45.2
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 3.4e-26 124.4 100 63.0
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 5.7e-26 123.6 100 62.0
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 2.9e-22 111.3 112 55.4
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 6.4e-17 93.6 181 34.8
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 3.9e-14 84.3 57 63.2
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 5.6e-13 80.5 63 57.1
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 6.2e-12 77.0 67 58.2
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 3.1e-11 74.7 47 72.3
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 3.4e-10 71.2 109 47.7
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 9.2e-08 63.2 40 77.5
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 2.7e-07 61.6 35 80.0
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 6.6e-06 57.0 34 76.5


User provided reference genes

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