Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 0.0e+00 1254.6 663 100.0
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 7.7e-294 1013.4 663 84.6
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 8.0e-267 923.7 663 76.2
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 4.3e-252 874.8 664 73.2
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 2.1e-238 829.3 664 69.1
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 6.2e-219 764.6 669 62.0
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 1.1e-218 763.8 673 62.7
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 4.0e-218 761.9 673 62.6
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 4.9e-216 755.0 672 61.3
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 2.4e-215 752.7 672 61.6
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 3.2e-215 752.3 682 64.5
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 6.7e-213 744.6 669 61.4
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 8.7e-213 744.2 607 71.3
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 1.9e-212 743.0 661 64.1
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 4.3e-212 741.9 666 62.5
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 3.6e-211 738.8 682 63.2
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 1.8e-210 736.5 664 62.2
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 6.9e-210 734.6 686 63.6
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 9.9e-209 730.7 631 66.4
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 2.2e-208 729.6 674 63.5
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 1.6e-206 723.4 669 63.1
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 1.6e-206 723.4 670 60.4
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 2.7e-206 722.6 678 60.2
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 1.3e-205 720.3 666 59.0
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 5.1e-205 718.4 657 60.0
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 5.1e-205 718.4 669 62.8
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 5.6e-204 714.9 664 59.8
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 9.6e-204 714.1 664 60.7
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 5.3e-202 708.4 661 61.4
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 3.8e-200 702.2 704 56.5
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 5.1e-197 691.8 681 57.1
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 1.1e-196 690.6 569 65.4
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 3.3e-196 689.1 657 59.5
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 7.4e-196 688.0 674 57.0
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 1.6e-195 686.8 695 61.6
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 4.8e-195 685.3 674 56.2
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 8.2e-195 684.5 675 59.3
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 8.2e-195 684.5 665 58.3
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 1.4e-194 683.7 681 60.1
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 1.8e-194 683.3 673 56.2
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 2.4e-194 682.9 671 57.1
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 5.3e-194 681.8 587 66.8
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 1.5e-193 680.2 669 56.7
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 7.6e-193 677.9 623 61.2
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 1.7e-192 676.8 587 65.4
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 1.7e-192 676.8 649 58.9
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 3.8e-192 675.6 644 59.0
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 6.5e-192 674.9 655 58.2
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 3.2e-191 672.5 643 59.3
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 4.2e-191 672.2 682 55.0
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 5.5e-191 671.8 674 57.9
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 5.5e-191 671.8 666 57.8
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 7.2e-191 671.4 670 59.0
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 1.2e-190 670.6 687 54.1
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 1.2e-190 670.6 659 59.9
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 2.7e-190 669.5 562 63.5
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 6.1e-190 668.3 664 58.0
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 1.0e-189 667.5 666 58.4
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 1.0e-189 667.5 672 58.6
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 1.0e-189 667.5 673 58.7
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 1.0e-189 667.5 684 58.2
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 1.3e-189 667.2 666 58.9
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.8e-189 666.8 664 57.4
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 2.3e-189 666.4 674 53.4
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 3.0e-189 666.0 682 58.4
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 3.0e-189 666.0 652 58.1
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 3.0e-189 666.0 646 58.0
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 3.9e-189 665.6 700 55.0
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 5.1e-189 665.2 685 58.4
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 8.7e-189 664.5 664 58.3
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 1.1e-188 664.1 672 55.1
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 1.9e-188 663.3 661 56.0
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 2.5e-188 662.9 674 56.7
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 2.5e-188 662.9 641 56.6
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 4.3e-188 662.1 674 57.1
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 4.3e-188 662.1 682 58.4
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 5.7e-188 661.8 683 54.9
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 7.4e-188 661.4 675 56.7
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 9.7e-188 661.0 665 55.8
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 1.3e-187 660.6 666 56.6
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 1.3e-187 660.6 643 56.6
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 1.3e-187 660.6 672 54.8
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 2.2e-187 659.8 642 56.5
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 6.3e-187 658.3 640 61.6
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 6.3e-187 658.3 673 59.0
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 5.3e-186 655.2 655 57.4
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 2.6e-185 652.9 672 55.4
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 4.5e-185 652.1 664 57.7
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 4.5e-185 652.1 669 56.1
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 5.9e-185 651.7 720 56.4
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 7.7e-185 651.4 643 59.1
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 5.0e-184 648.7 694 55.6
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 8.5e-184 647.9 576 59.7
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 9.4e-183 644.4 642 56.4
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 1.2e-182 644.0 677 52.7
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 3.9e-181 639.0 676 54.3
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 6.7e-181 638.3 679 56.1
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 8.8e-181 637.9 678 56.0
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 5.7e-180 635.2 633 54.5
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 7.4e-180 634.8 542 63.5
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 7.4e-180 634.8 636 57.4
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 9.7e-180 634.4 674 53.9
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 2.9e-176 622.9 634 54.7
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 6.5e-176 621.7 666 52.1
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 6.5e-176 621.7 666 53.6
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 8.5e-176 621.3 666 53.8
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 1.1e-175 620.9 666 53.5
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 1.4e-175 620.5 666 52.1
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 2.5e-175 619.8 665 52.3
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 3.2e-175 619.4 625 54.9
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 4.2e-175 619.0 665 52.6
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 7.2e-175 618.2 628 61.3
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 2.1e-174 616.7 633 53.7
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 6.1e-174 615.1 657 57.4
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 1.5e-172 610.5 630 52.9
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 3.3e-172 609.4 630 53.7
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 6.3e-171 605.1 620 57.1
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 6.3e-171 605.1 601 55.4
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 1.2e-169 600.9 666 53.0
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 1.6e-169 600.5 663 53.5
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 1.3e-168 597.4 629 54.8
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 8.5e-168 594.7 628 53.7
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 1.4e-165 587.4 636 54.2
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 5.2e-165 585.5 506 63.2
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 3.3e-164 582.8 598 57.2
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 2.7e-161 573.2 607 54.9
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 2.2e-160 570.1 661 50.8
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 2.5e-159 566.6 702 50.1
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 4.2e-159 565.8 675 51.1
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 4.7e-158 562.4 554 60.6
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 1.4e-157 560.8 595 54.5
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 5.0e-152 542.3 646 49.1
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 6.5e-152 542.0 629 50.2
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 1.3e-147 527.7 654 47.4
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 1.0e-141 508.1 628 46.8
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 1.2e-140 504.6 479 55.9
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 9.2e-138 495.0 625 48.2
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 4.6e-137 492.7 673 46.8
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 3.9e-136 489.6 699 43.9
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 2.1e-134 483.8 423 65.2
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 1.8e-133 480.7 604 49.0
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 1.3e-123 448.0 356 66.9
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 2.7e-121 440.3 519 49.5
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 2.8e-110 403.7 431 55.9
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 6.0e-105 386.0 325 64.6
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 9.6e-95 352.1 316 62.7
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 4.0e-93 346.7 417 48.7
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 2.9e-91 340.5 543 37.6
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 1.7e-67 261.5 163 82.2
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 6.7e-64 249.6 271 56.5
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 5.9e-52 209.9 228 57.5
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 9.4e-50 202.6 252 46.4
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 3.3e-47 194.1 138 75.4
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 2.8e-33 147.9 472 27.8
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 5.4e-29 133.7 167 52.1
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 7.3e-26 123.2 561 21.9
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 1.0e-24 119.4 509 23.2
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 1.1e-21 109.4 79 63.3
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 1.7e-19 102.1 92 52.2
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 5.0e-19 100.5 91 56.0
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 8.6e-19 99.8 72 69.4
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 1.2e-17 95.9 72 66.7
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 3.6e-17 94.4 195 47.7
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 2.3e-16 91.7 62 72.6
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 3.4e-15 87.8 66 72.7
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 1.7e-14 85.5 101 50.5
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 3.7e-14 84.3 139 39.6
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 1.4e-13 82.4 103 49.5
Lsat_1_v5_gn_5_80480 Lactuca sativa HOM05D004045 ORTHO05D002405 2.0e-07 62.0 35 85.7
Lsat_1_v5_gn_1_65601 Lactuca sativa HOM05D001017 ORTHO05D001025 7.5e-07 60.1 36 83.3
AUR62026403 Chenopodium quinoa HOM05D012008 ORTHO05D014086 1.3e-06 59.3 34 76.5
RhsimUnG0001000 Rhododendron simsii HOM05D004045 ORTHO05D004923 4.9e-06 57.4 34 76.5


User provided reference genes

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