Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0035300 Salix brachista HOM05D005373 ORTHO05D006617 1.3e-120 436.4 222 100.0
Manes.01G200900 Manihot esculenta HOM05D005373 ORTHO05D006617 7.1e-34 148.3 91 84.6
Potri.002G043600 Populus trichocarpa HOM05D005373 ORTHO05D006617 9.2e-34 147.9 91 85.7
Potri.005G219400 Populus trichocarpa HOM05D005373 ORTHO05D006617 3.0e-32 142.9 91 82.4
COL.COLO4_08280 Corchorus olitorius HOM05D005373 ORTHO05D006617 8.6e-32 141.4 91 79.1
COL.COLO4_29457 Corchorus olitorius HOM05D005373 ORTHO05D006617 8.6e-32 141.4 91 79.1
CARHR157930 Cardamine hirsuta HOM05D005373 ORTHO05D006617 1.1e-31 141.0 91 81.3
AL5G28610 Arabidopsis lyrata HOM05D005373 ORTHO05D006617 1.5e-31 140.6 91 80.2
AT3G49100 Arabidopsis thaliana HOM05D005373 ORTHO05D006617 1.5e-31 140.6 91 80.2
Sp5g12980 Schrenkiella parvula HOM05D005373 ORTHO05D006617 1.5e-31 140.6 91 80.2
Ciclev10023009m.g Citrus clementina HOM05D005373 ORTHO05D006617 2.5e-31 139.8 91 80.2
Thecc.01G266100 Theobroma cacao HOM05D005373 ORTHO05D006617 2.5e-31 139.8 91 79.1
Carub.0005s1529 Capsella rubella HOM05D005373 ORTHO05D006617 3.3e-31 139.4 91 80.2
Thhalv10010849m.g Eutrema salsugineum HOM05D005373 ORTHO05D006617 3.3e-31 139.4 91 80.2
Nn3g19526 Nelumbo nucifera HOM05D005373 ORTHO05D006617 3.3e-31 139.4 104 70.2
SGA_v2.0_scaffold1G00570 Striga asiatica HOM05D005373 ORTHO05D006617 3.3e-31 139.4 128 60.2
THA.LOC104821383 Tarenaya hassleriana HOM05D005373 ORTHO05D006617 3.3e-31 139.4 91 80.2
Duzib211G0177 Durio zibethinus HOM05D005373 ORTHO05D006617 4.3e-31 139.0 91 78.0
Gohir.A08G188600 Gossypium hirsutum HOM05D005373 ORTHO05D006617 4.3e-31 139.0 91 78.0
Gohir.D08G207000 Gossypium hirsutum HOM05D005373 ORTHO05D006617 4.3e-31 139.0 91 78.0
Gorai.004G219200 Gossypium raimondii HOM05D005373 ORTHO05D006617 4.3e-31 139.0 91 78.0
Peaxi162Scf00700g00135 Petunia axillaris HOM05D005373 ORTHO05D006617 4.3e-31 139.0 92 79.3
Atru.chr5.1594 Acer truncatum HOM05D005373 ORTHO05D006617 5.6e-31 138.7 91 78.0
CSS0017854 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 5.6e-31 138.7 91 78.0
Hund17126 Selenicereus undatus HOM05D005373 ORTHO05D006617 5.6e-31 138.7 91 79.1
Cpa.g.sc52.142 Carica papaya HOM05D005373 ORTHO05D006617 7.3e-31 138.3 91 79.1
Rhsim12G0063100 Rhododendron simsii HOM05D005373 ORTHO05D006617 7.3e-31 138.3 91 78.0
Sc02g0003290 Simmondsia chinensis HOM05D005373 ORTHO05D006617 7.3e-31 138.3 91 78.0
Dinv22468 Davidia involucrata HOM05D005373 ORTHO05D006617 9.5e-31 137.9 91 78.0
THA.LOC104818165 Tarenaya hassleriana HOM05D005373 ORTHO05D006617 9.5e-31 137.9 91 79.1
Actinidia24948 Actinidia chinensis HOM05D005373 ORTHO05D006617 1.2e-30 137.5 91 78.0
arahy.Tifrunner.gnm1.ann1.W8F73Z Arachis hypogaea HOM05D005373 ORTHO05D006617 1.2e-30 137.5 91 76.9
Lalb_Chr03g0041301 Lupinus albus HOM05D005373 ORTHO05D006617 1.2e-30 137.5 91 78.0
EL10Ac1g00710 Beta vulgaris HOM05D005373 ORTHO05D006617 1.6e-30 137.1 91 76.9
Cfa002338 Carpinus fangiana HOM05D005373 ORTHO05D006617 1.6e-30 137.1 91 78.0
Cc01_g18740 Coffea canephora HOM05D005373 ORTHO05D006617 1.6e-30 137.1 92 76.1
Lj5g0027817 Lotus japonicus HOM05D005373 ORTHO05D006617 1.6e-30 137.1 91 75.8
PSO832G1599 Papaver somniferum HOM05D005373 ORTHO05D006617 1.6e-30 137.1 91 78.0
TPR.G35732 Trifolium pratense HOM05D005373 ORTHO05D006617 1.6e-30 137.1 91 76.9
Actinidia21168 Actinidia chinensis HOM05D005373 ORTHO05D006617 2.1e-30 136.7 91 76.9
BcaC07g39386 Brassica carinata HOM05D005373 ORTHO05D006617 2.1e-30 136.7 91 78.0
A06p18650 Brassica napus HOM05D005373 ORTHO05D006617 2.1e-30 136.7 91 78.0
C08p24090 Brassica napus HOM05D005373 ORTHO05D006617 2.1e-30 136.7 91 78.0
BolC8t50030H Brassica oleracea HOM05D005373 ORTHO05D006617 2.1e-30 136.7 91 78.0
BraA06t24943Z Brassica rapa HOM05D005373 ORTHO05D006617 2.1e-30 136.7 91 78.0
Medtr1g070460 Medicago truncatula HOM05D005373 ORTHO05D006617 2.1e-30 136.7 91 76.9
TAR633G1352 Trochodendron aralioides HOM05D005373 ORTHO05D006617 2.1e-30 136.7 91 76.9
vmacro11045 Vaccinium macrocarpon HOM05D005373 ORTHO05D006617 2.1e-30 136.7 91 78.0
BcaB02g09576 Brassica carinata HOM05D005373 ORTHO05D006617 2.8e-30 136.3 91 78.0
FvH4_2g22310 Fragaria vesca HOM05D005373 ORTHO05D006617 2.8e-30 136.3 91 78.0
FAN15G3255 Fragaria x ananassa HOM05D005373 ORTHO05D006617 2.8e-30 136.3 91 78.0
FAN20G0018 Fragaria x ananassa HOM05D005373 ORTHO05D006617 2.8e-30 136.3 91 78.0
FAN24G2777 Fragaria x ananassa HOM05D005373 ORTHO05D006617 2.8e-30 136.3 91 78.0
QL04p081438 Quercus lobata HOM05D005373 ORTHO05D006617 2.8e-30 136.3 90 76.7
QL12p042863 Quercus lobata HOM05D005373 ORTHO05D006617 2.8e-30 136.3 90 76.7
RcHm_v2.0_Chr6g0289311 Rosa chinensis HOM05D005373 ORTHO05D006617 2.8e-30 136.3 91 78.0
GSVIVG01000751001 Vitis vinifera HOM05D005373 ORTHO05D006617 2.8e-30 136.3 91 76.9
MBI04_g39243_MAGBIO Magnolia biondii HOM05D005373 ORTHO05D006617 3.6e-30 136.0 91 75.8
MD05G1204500 Malus domestica HOM05D005373 ORTHO05D006617 3.6e-30 136.0 91 78.0
MD10G1191500 Malus domestica HOM05D005373 ORTHO05D006617 3.6e-30 136.0 91 78.0
Nn1g02594 Nelumbo nucifera HOM05D005373 ORTHO05D006617 3.6e-30 136.0 91 75.8
Prupe.8G230800 Prunus persica HOM05D005373 ORTHO05D006617 3.6e-30 136.0 91 78.0
BcaB01g00749 Brassica carinata HOM05D005373 ORTHO05D006617 4.7e-30 135.6 91 76.9
Phvul.008G134200 Phaseolus vulgaris HOM05D005373 ORTHO05D006617 4.7e-30 135.6 91 75.8
Rhsim01G0268500 Rhododendron simsii HOM05D005373 ORTHO05D006617 4.7e-30 135.6 90 77.8
Aa31LG4G17560 Aethionema arabicum HOM05D005373 ORTHO05D006617 6.2e-30 135.2 92 79.3
MSTRG.18297 Avicennia marina HOM05D005373 ORTHO05D006617 6.2e-30 135.2 92 75.0
DCAR_012520 Daucus carota HOM05D005373 ORTHO05D006617 6.2e-30 135.2 92 76.1
Lalb_Chr19g0125981 Lupinus albus HOM05D005373 ORTHO05D006617 6.2e-30 135.2 91 74.7
BraA06t25747Z Brassica rapa HOM05D005373 ORTHO05D006617 8.1e-30 134.8 91 76.9
CANSAT01G0877 Cannabis sativa HOM05D005373 ORTHO05D006617 8.1e-30 134.8 91 76.9
MELO3C014306.2 Cucumis melo HOM05D005373 ORTHO05D006617 8.1e-30 134.8 91 75.8
CsaV3_2G013670 Cucumis sativus L. HOM05D005373 ORTHO05D006617 8.1e-30 134.8 91 75.8
Glyma.08G346000 Glycine max HOM05D005373 ORTHO05D006617 8.1e-30 134.8 91 75.8
A06p28050 Brassica napus HOM05D005373 ORTHO05D006617 1.1e-29 134.4 91 76.9
CiPaw.02G033000 Carya illinoinensis HOM05D005373 ORTHO05D006617 1.1e-29 134.4 91 76.9
CiPaw.04G182700 Carya illinoinensis HOM05D005373 ORTHO05D006617 1.1e-29 134.4 91 76.9
AUR62013793 Chenopodium quinoa HOM05D005373 ORTHO05D006617 1.1e-29 134.4 91 75.8
AUR62023362 Chenopodium quinoa HOM05D005373 ORTHO05D006617 1.1e-29 134.4 91 75.8
Glyma.18G156300 Glycine max HOM05D005373 ORTHO05D006617 1.1e-29 134.4 91 75.8
Oeu002282.1 Olea europaea HOM05D001069 ORTHO05D001549 1.1e-29 134.4 92 73.9
Psat4g197520 Pisum sativum HOM05D005373 ORTHO05D006617 1.1e-29 134.4 91 76.9
CSS0009352 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 1.4e-29 134.0 91 76.9
CANSAT11G1068 Cannabis sativa HOM05D005373 ORTHO05D006617 1.4e-29 134.0 91 76.9
ClCG07G000650 Citrullus lanatus HOM05D005373 ORTHO05D006617 1.4e-29 134.0 91 75.8
Gorai.007G142700 Gossypium raimondii HOM05D005373 ORTHO05D006617 1.4e-29 134.0 91 78.0
TAR365G0879 Trochodendron aralioides HOM05D005373 ORTHO05D006617 1.8e-29 133.7 91 74.7
Migut.D00388 Erythranthe guttata HOM05D005373 ORTHO05D006617 2.3e-29 133.3 92 75.0
PGR102G1093 Punica granatum HOM05D005373 ORTHO05D006617 2.3e-29 133.3 91 74.7
Sed0003924 Sechium edule HOM05D005373 ORTHO05D006617 2.3e-29 133.3 91 74.7
Solyc12g099820.1 Solanum lycopersicum HOM05D005373 ORTHO05D006617 3.1e-29 132.9 92 77.2
Sopen12g034450 Solanum pennellii HOM05D005373 ORTHO05D006617 3.1e-29 132.9 92 77.2
TPR.G2468 Trifolium pratense HOM05D005373 ORTHO05D006617 3.1e-29 132.9 91 74.7
ATR0665G560 Amborella trichopoda HOM05D005373 ORTHO05D006617 4.0e-29 132.5 91 73.6
Aqoxy2G03557 Aquilegia oxysepala HOM05D005373 ORTHO05D006617 4.0e-29 132.5 91 73.6
SGA_v2.0_scaffold138G35268 Striga asiatica HOM05D005373 ORTHO05D006617 4.0e-29 132.5 92 73.9
BcaC01g02388 Brassica carinata HOM05D005373 ORTHO05D006617 6.8e-29 131.7 91 75.8
BolC3t18839H Brassica oleracea HOM05D005373 ORTHO05D006617 6.8e-29 131.7 91 75.8
PGSC0003DMG400004717 Solanum tuberosum HOM05D005373 ORTHO05D006617 1.2e-28 131.0 91 76.9
SalBow4G0280 Salvia bowleyana HOM05D005373 ORTHO05D006617 1.5e-28 130.6 92 71.7
unitig_26.g10142 Utricularia gibba HOM05D005373 ORTHO05D006617 1.5e-28 130.6 92 73.9
TWI18G0681 Tripterygium wilfordii HOM05D005373 ORTHO05D006617 2.0e-28 130.2 91 72.5
Dinv34577 Davidia involucrata HOM05D005373 ORTHO05D006617 2.6e-28 129.8 91 74.7
C03p65820 Brassica napus HOM05D005373 ORTHO05D006617 3.4e-28 129.4 91 74.7
Duzib138G0987 Durio zibethinus HOM05D005373 ORTHO05D006617 4.4e-28 129.0 92 75.0
CAN.G575.93 Capsicum annuum HOM05D005373 ORTHO05D006617 5.8e-28 128.6 92 76.1
Zm00001eb281280 Zea mays HOM05D005373 ORTHO05D006617 5.8e-28 128.6 90 72.2
Eucgr.B01502 Eucalyptus grandis HOM05D005373 ORTHO05D006617 7.6e-28 128.3 91 73.6
Gohir.D11G133500 Gossypium hirsutum HOM05D005373 ORTHO05D006617 9.9e-28 127.9 87 78.2
Lsat_1_v5_gn_5_186641 Lactuca sativa HOM05D005373 ORTHO05D006617 1.7e-27 127.1 92 73.9
Nitab4.5_0002310g0090 Nicotiana tabacum HOM05D005373 ORTHO05D006617 2.2e-27 126.7 92 72.8
HanXRQChr01g0005311 Helianthus annuus HOM05D005373 ORTHO05D006617 8.4e-27 124.8 91 73.6
HanXRQChr06g0164391 Helianthus annuus HOM05D005373 ORTHO05D006617 8.4e-27 124.8 91 73.6
CDE06G2230 Ceratophyllum demersum HOM05D005373 ORTHO05D006617 1.1e-26 124.4 91 69.2
ECA248G2609 Erigeron canadensis HOM05D005373 ORTHO05D006617 1.1e-26 124.4 91 72.5
Migut.N02186 Erythranthe guttata HOM05D005373 ORTHO05D006617 1.1e-26 124.4 92 70.7
Glyma.02G141101 Glycine max HOM05D005373 ORTHO05D006617 1.1e-26 124.4 91 70.3
Glyma.10G032800 Glycine max HOM05D005373 ORTHO05D006617 1.1e-26 124.4 91 69.2
PSO063G5966 Papaver somniferum HOM05D005373 ORTHO05D006617 1.1e-26 124.4 91 73.6
Gohir.A11G127860 Gossypium hirsutum HOM05D005373 ORTHO05D006617 1.4e-26 124.0 87 77.0
HPP92_008005 Vanilla planifolia HOM05D005373 ORTHO05D006617 1.9e-26 123.6 91 70.3
arahy.Tifrunner.gnm1.ann1.ZBI3RA Arachis hypogaea HOM05D005373 ORTHO05D006617 2.4e-26 123.2 117 59.8
MSTRG.21508 Avicennia marina HOM05D005373 ORTHO05D006617 3.2e-26 122.9 92 70.7
Zm00001eb379840 Zea mays HOM05D005373 ORTHO05D006617 4.1e-26 122.5 91 70.3
Haze_24544 Corylus avellana HOM05D005373 ORTHO05D006617 9.2e-26 121.3 117 59.8
AagrBONN_evm.TU.Sc2ySwM_344.4653 Anthoceros agrestis HOM05D005373 ORTHO05D006617 6.6e-24 115.2 91 65.9
CSS0047138 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 1.9e-23 113.6 83 73.5
Mapoly0042s0050 Marchantia polymorpha HOM05D005373 ORTHO05D006617 1.6e-22 110.5 91 62.6
Pp3c14_7880 Physcomitrium patens HOM05D005373 ORTHO05D006617 2.8e-22 109.8 91 63.7
Ah.05g177620 Amaranthus hybridus HOM05D005373 ORTHO05D006617 1.1e-21 107.8 154 45.5
Hma1.2p1_1029F.1_g249680 Hydrangea macrophylla HOM05D005373 ORTHO05D006617 1.4e-21 107.5 54 90.7
Pp3c2_1790 Physcomitrium patens HOM05D005373 ORTHO05D006617 2.0e-20 103.6 91 60.4
CBR_g18652 Chara braunii HOM05D005373 ORTHO05D006617 8.4e-19 98.2 91 60.4
Sed0007692 Sechium edule HOM05D005373 ORTHO05D006617 9.3e-18 94.7 91 58.2
Gohir.A12G149900 Gossypium hirsutum HOM05D005373 ORTHO05D006617 6.0e-17 92.0 68 70.6
Atru.chr2.3918 Acer truncatum HOM05D005373 ORTHO05D006617 1.0e-16 91.3 79 65.8
Gohir.A10G156200 Gossypium hirsutum HOM05D005373 ORTHO05D006617 2.4e-13 80.1 66 65.2
TWI36G0734 Tripterygium wilfordii HOM05D000030 ORTHO05D000009 9.0e-13 78.2 67 62.7
PRCOL_00002130 Prasinoderma coloniale HOM05D005373 ORTHO05D006617 3.4e-12 76.3 53 64.2
CSS0032008 Camellia sinensis var. sinensis HOM05D005373 ORTHO05D006617 5.8e-12 75.5 64 64.1
Cre12.g546250 Chlamydomonas reinhardtii HOM05D005373 ORTHO05D006617 2.4e-10 70.1 56 55.4
Atru.chr7.944 Acer truncatum HOM05D005373 ORTHO05D006617 7.1e-10 68.6 32 96.9
TAR636G2640 Trochodendron aralioides HOM05D007216 ORTHO05D009261 4.6e-09 65.9 64 60.9


User provided reference genes

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