Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 9.0e-263 909.8 498 100.0
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 3.9e-173 612.1 381 87.9
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 2.7e-142 509.6 380 75.0
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 9.0e-138 494.6 383 72.8
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 1.1e-127 461.1 386 67.9
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 1.8e-122 443.7 388 64.9
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.1e-103 381.3 387 60.7
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 1.9e-103 380.6 387 60.2
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 3.2e-103 379.8 387 60.5
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 1.6e-102 377.5 386 60.6
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 3.0e-101 373.2 389 57.6
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 3.0e-101 373.2 387 57.1
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 5.7e-100 369.0 397 57.4
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 2.2e-96 357.1 376 62.2
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 2.5e-95 353.6 378 58.7
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 2.3e-93 347.1 418 55.5
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 7.5e-92 342.0 384 56.2
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 9.8e-92 341.7 391 58.1
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 2.2e-91 340.5 404 56.4
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 1.4e-90 337.8 390 53.1
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 1.0e-88 331.6 406 53.0
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 1.0e-88 331.6 380 55.8
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 2.2e-88 330.5 382 58.4
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 2.9e-88 330.1 390 52.6
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 3.8e-88 329.7 392 54.3
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 1.1e-87 328.2 393 51.7
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 1.9e-87 327.4 389 53.7
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 3.6e-86 323.2 414 51.4
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 3.6e-86 323.2 388 50.8
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 4.7e-86 322.8 404 55.7
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 4.7e-86 322.8 384 53.4
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 4.7e-86 322.8 410 51.2
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 6.1e-86 322.4 385 53.2
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 3.0e-85 320.1 385 52.7
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 5.2e-85 319.3 391 56.3
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 2.0e-84 317.4 388 51.8
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 9.8e-84 315.1 384 53.1
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 1.4e-82 311.2 398 53.8
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 1.4e-82 311.2 399 53.1
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 3.1e-82 310.1 388 53.1
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 1.7e-80 304.3 396 46.7
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 1.7e-80 304.3 408 53.7
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 1.7e-80 304.3 399 52.1
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 1.5e-79 301.2 396 51.5
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 2.5e-79 300.4 386 48.7
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 1.6e-78 297.7 384 51.3
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 2.1e-78 297.4 385 54.0
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 3.6e-78 296.6 403 49.9
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 1.4e-77 294.7 389 48.3
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 1.8e-77 294.3 394 50.3
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 5.2e-77 292.7 408 48.0
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 5.2e-77 292.7 387 47.8
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 2.0e-76 290.8 395 48.1
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 2.2e-75 287.3 384 47.9
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 3.7e-75 286.6 386 54.1
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 6.4e-75 285.8 379 47.8
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 1.8e-74 284.3 394 48.0
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 1.8e-74 284.3 393 52.2
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 5.4e-74 282.7 386 47.9
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 7.0e-74 282.3 388 50.8
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 9.2e-74 282.0 396 49.7
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 2.7e-73 280.4 397 52.6
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 1.7e-72 277.7 384 47.1
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 3.0e-72 276.9 391 49.6
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 3.9e-72 276.6 386 47.4
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 5.0e-72 276.2 343 51.9
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 5.0e-72 276.2 378 50.5
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 8.6e-72 275.4 389 50.4
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 1.1e-71 275.0 392 50.0
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 1.9e-71 274.2 427 47.5
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 1.9e-71 274.2 410 49.8
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 2.5e-71 273.9 377 51.7
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 4.7e-70 269.6 384 47.1
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 1.4e-69 268.1 386 45.1
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 2.3e-69 267.3 413 46.2
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 6.4e-67 259.2 386 47.2
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 4.1e-66 256.5 391 47.1
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 2.7e-65 253.8 334 50.0
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 3.5e-65 253.4 384 48.7
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 6.0e-65 252.7 384 51.3
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 7.8e-65 252.3 390 44.6
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 8.6e-64 248.8 384 44.5
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 1.5e-63 248.1 349 47.0
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 1.9e-63 247.7 405 47.7
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 1.9e-63 247.7 395 45.8
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 2.5e-63 247.3 339 47.8
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 5.6e-63 246.1 379 44.9
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 9.5e-63 245.4 396 46.7
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 2.1e-62 244.2 419 46.1
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 2.3e-61 240.7 406 46.6
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 1.5e-60 238.0 403 46.9
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 9.8e-60 235.3 384 42.4
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 1.7e-59 234.6 395 46.8
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 6.4e-59 232.6 397 44.3
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 1.1e-58 231.9 416 45.4
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 1.4e-58 231.5 367 46.3
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 2.1e-57 227.6 391 46.0
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 2.1e-57 227.6 391 46.0
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 2.1e-57 227.6 391 46.0
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 3.5e-57 226.9 417 45.1
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 3.5e-57 226.9 392 45.7
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 3.5e-57 226.9 392 45.7
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 3.5e-57 226.9 392 45.7
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 3.5e-57 226.9 397 43.6
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 7.8e-57 225.7 397 46.6
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 1.7e-56 224.6 384 46.9
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 5.1e-56 223.0 439 40.1
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 8.6e-56 222.2 403 45.7
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 1.5e-55 221.5 356 45.8
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 9.5e-55 218.8 419 39.6
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 6.2e-54 216.1 371 42.3
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 4.0e-53 213.4 369 44.4
Dinv33475 Davidia involucrata HOM05D005109 ORTHO05D006084 8.9e-53 212.2 173 68.2
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 1.2e-52 211.8 400 43.2
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 3.4e-52 210.3 390 41.5
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 7.6e-52 209.1 395 43.8
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 7.6e-52 209.1 395 43.8
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 2.2e-51 207.6 209 60.8
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 2.9e-51 207.2 354 47.5
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 2.9e-51 207.2 354 47.5
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 2.9e-51 207.2 355 47.6
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 1.4e-50 204.9 386 43.8
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 4.1e-50 203.4 280 50.4
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.0e-48 198.7 409 43.0
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 6.6e-48 196.1 396 44.9
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 8.6e-48 195.7 383 40.2
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 8.6e-48 195.7 370 42.7
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 1.9e-47 194.5 373 45.3
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 1.2e-46 191.8 191 59.2
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 2.1e-41 174.5 384 37.8
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 6.0e-41 172.9 400 36.0
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 3.0e-40 170.6 262 47.7
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 1.1e-37 162.2 401 38.9
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 1.5e-36 158.3 267 45.3
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 4.5e-36 156.8 353 40.5
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 1.3e-35 155.2 392 35.5
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 4.5e-28 130.2 213 46.0
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 5.6e-23 113.2 214 41.1
Hund00596 Selenicereus undatus HOM05D005109 ORTHO05D006084 1.6e-22 111.7 187 44.4
CDE02G3939 Ceratophyllum demersum HOM05D005109 ORTHO05D006084 4.6e-17 93.6 133 44.4
Lj1C67T4 Lonicera japonica HOM05D005109 ORTHO05D006084 1.8e-16 91.7 351 30.2
Cpa.g.c44470 Carica papaya HOM05D005109 ORTHO05D006084 5.5e-10 70.1 163 36.2
Actinidia25795 Actinidia chinensis HOM05D005109 ORTHO05D006084 2.1e-09 68.2 219 32.0
Actinidia37514 Actinidia chinensis HOM05D000378 ORTHO05D006084 6.7e-08 63.2 52 65.4
MELO3C012884.2 Cucumis melo HOM05D005109 ORTHO05D006084 2.8e-06 57.8 94 45.7


User provided reference genes

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