Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 4.0e-134 481.5 255 100.0
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 2.3e-105 386.0 236 89.4
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 1.0e-89 334.0 252 75.8
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 3.8e-84 315.5 231 77.1
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 1.3e-79 300.4 240 68.3
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 1.3e-79 300.4 238 71.4
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 1.4e-78 297.0 239 68.2
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 4.1e-78 295.4 256 68.4
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 5.4e-78 295.0 237 68.8
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 2.0e-77 293.1 237 68.8
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 1.0e-76 290.8 237 67.9
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 1.7e-76 290.0 255 66.7
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 1.2e-74 283.9 255 65.5
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 8.0e-74 281.2 241 66.0
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 8.0e-74 281.2 238 65.1
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.8e-73 280.0 241 66.0
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 2.3e-73 279.6 239 65.3
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 3.0e-73 279.3 246 66.3
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 4.0e-73 278.9 241 66.0
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 1.5e-72 276.9 237 70.0
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 2.6e-72 276.2 241 67.2
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 8.3e-71 271.2 285 59.6
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 8.3e-71 271.2 250 63.6
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 2.4e-70 269.6 239 64.9
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 7.0e-70 268.1 256 62.5
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 9.2e-70 267.7 256 62.5
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 1.2e-69 267.3 256 63.3
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 7.8e-69 264.6 238 63.0
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 1.3e-68 263.8 271 60.1
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 5.0e-68 261.9 256 62.9
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 2.5e-67 259.6 238 62.2
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 4.7e-66 255.4 266 58.6
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 8.0e-66 254.6 238 65.1
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 1.0e-65 254.2 250 60.8
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 3.1e-65 252.7 238 61.8
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 1.2e-64 250.8 240 62.1
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 2.6e-64 249.6 240 61.7
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 3.4e-64 249.2 232 62.5
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 2.2e-63 246.5 247 60.7
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 1.1e-62 244.2 240 62.9
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 5.4e-62 241.9 256 56.6
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 7.0e-62 241.5 245 59.2
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 3.5e-61 239.2 234 61.1
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 7.8e-61 238.0 242 59.1
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 1.0e-60 237.7 231 61.0
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 1.0e-60 237.7 238 59.7
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 1.3e-60 237.3 246 60.2
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.3e-60 237.3 241 58.5
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 3.9e-60 235.7 231 63.6
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 3.9e-60 235.7 257 59.9
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 5.0e-60 235.3 252 56.0
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 8.6e-60 234.6 229 61.6
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 1.1e-59 234.2 249 57.4
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 1.9e-59 233.4 244 57.8
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 1.9e-59 233.4 240 59.2
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 2.5e-59 233.0 263 55.1
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 5.6e-59 231.9 240 57.9
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 4.7e-58 228.8 234 60.7
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 6.2e-58 228.4 334 45.8
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 8.1e-58 228.0 244 58.6
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 2.3e-57 226.5 230 59.1
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 1.5e-56 223.8 238 57.1
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 2.0e-56 223.4 242 58.3
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 2.6e-56 223.0 253 53.8
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 4.4e-56 222.2 240 55.8
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 1.7e-55 220.3 233 58.4
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 2.2e-55 219.9 234 57.3
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 8.3e-55 218.0 238 56.3
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 1.1e-54 217.6 255 52.5
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 1.9e-54 216.9 235 55.7
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 2.4e-54 216.5 229 61.6
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 3.2e-54 216.1 257 53.3
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 4.1e-54 215.7 230 57.4
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 7.1e-54 214.9 231 56.7
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 1.6e-53 213.8 239 56.5
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 2.7e-53 213.0 246 55.7
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 2.7e-53 213.0 230 56.5
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 3.5e-53 212.6 237 54.9
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 4.6e-53 212.2 237 56.5
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 1.7e-52 210.3 230 56.1
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 3.0e-52 209.5 260 52.7
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 3.0e-52 209.5 209 59.8
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 3.0e-52 209.5 209 59.8
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 3.0e-52 209.5 238 54.6
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 1.1e-51 207.6 238 55.9
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 1.9e-51 206.8 230 55.2
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 1.9e-51 206.8 230 55.2
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 3.3e-51 206.1 228 53.9
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 4.3e-51 205.7 231 54.5
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 7.3e-51 204.9 238 52.9
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 7.3e-51 204.9 259 52.5
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 1.2e-50 204.1 229 55.9
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 2.1e-50 203.4 248 53.2
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 2.1e-50 203.4 238 51.3
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 4.7e-50 202.2 229 52.4
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 2.3e-49 199.9 227 55.1
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 5.2e-49 198.7 230 55.2
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 6.8e-49 198.4 232 56.0
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 6.8e-49 198.4 232 56.0
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 6.8e-49 198.4 232 56.0
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 6.8e-49 198.4 232 54.3
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 1.5e-48 197.2 238 52.5
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 4.4e-48 195.7 232 53.9
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 4.4e-48 195.7 232 53.9
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 4.4e-48 195.7 239 53.1
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 3.7e-47 192.6 211 57.3
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 1.2e-45 187.6 242 52.1
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 2.7e-45 186.4 241 52.3
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 3.5e-45 186.0 230 53.9
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 7.8e-45 184.9 230 50.9
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 2.3e-44 183.3 234 50.9
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 2.5e-43 179.9 242 50.0
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 3.6e-42 176.0 253 46.2
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 3.6e-42 176.0 243 51.4
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 8.9e-41 171.4 240 48.3
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 8.9e-41 171.4 240 48.3
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 1.2e-40 171.0 196 53.1
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 2.6e-40 169.9 258 45.7
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 2.6e-40 169.9 258 45.7
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 3.4e-40 169.5 222 49.1
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 7.1e-38 161.8 178 60.1
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 1.1e-35 154.5 308 39.9
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 1.1e-35 154.5 243 45.3
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 4.3e-35 152.5 181 54.7
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 6.9e-33 145.2 131 64.9
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 9.9e-32 141.4 227 42.3
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 4.2e-30 136.0 236 41.9
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 4.6e-29 132.5 227 43.6
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 6.0e-29 132.1 100 71.0
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 3.3e-27 126.3 169 52.1
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 5.6e-27 125.6 166 50.6
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 1.3e-23 114.4 251 37.5
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 1.0e-20 104.8 156 48.7
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 6.7e-20 102.1 255 35.3
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 9.6e-19 98.2 174 44.3
MBI03_g11127_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 1.8e-17 94.0 132 47.7
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 2.6e-16 90.1 72 62.5
GSVIVG01013911001 Vitis vinifera HOM05D004799 ORTHO05D005500 3.8e-15 86.3 96 53.1
SEGI_00858 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 1.5e-11 74.3 133 42.9
arahy.Tifrunner.gnm1.ann1.DUW5WJ Arachis hypogaea HOM05D004799 ORTHO05D005500 4.3e-11 72.8 72 61.1
Pp3c4_27250 Physcomitrium patens HOM05D004799 ORTHO05D005500 9.6e-11 71.6 170 34.7
BcaB03g13258 Brassica carinata HOM05D004799 ORTHO05D005500 1.3e-10 71.2 91 49.5
A09p63310 Brassica napus HOM05D004799 ORTHO05D005500 3.1e-09 66.6 60 63.3
BraA09t41682Z Brassica rapa HOM05D004799 ORTHO05D005500 3.1e-09 66.6 60 63.3
Lj5A253T37 Lonicera japonica HOM05D012292 ORTHO05D012234 3.1e-09 66.6 216 32.4
Lj5A252G43 Lonicera japonica HOM05D012292 ORTHO05D012234 5.3e-09 65.9 94 46.8
CSS0012117 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 6.9e-09 65.5 43 79.1
CSS0018254 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 1.5e-08 64.3 43 79.1
SMO367G0479 Selaginella moellendorffii HOM05D004799 ORTHO05D005500 3.4e-08 63.2 39 74.4
Lj5A250G20 Lonicera japonica HOM05D012292 ORTHO05D012234 1.0e-07 61.6 74 40.5
Cre06.g279250 Chlamydomonas reinhardtii HOM05D004799 ORTHO05D005500 5.5e-06 55.8 229 27.1
Ah.13g066130 Amaranthus hybridus HOM05D004799 ORTHO05D005500 7.2e-06 55.5 65 50.8
Lsat_1_v5_gn_2_102640 Lactuca sativa HOM05D004799 ORTHO05D005500 9.3e-06 55.1 58 58.6


User provided reference genes

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