Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 7.0e-75 283.9 144 100.0
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 7.3e-56 220.7 161 77.0
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 1.7e-44 183.0 148 68.9
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 6.4e-44 181.0 143 67.8
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 8.3e-44 180.6 143 67.1
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 1.6e-42 176.4 143 67.8
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 7.8e-42 174.1 149 65.1
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 1.3e-41 173.3 145 64.8
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 3.0e-41 172.2 166 60.8
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 5.0e-41 171.4 143 66.4
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 8.6e-41 170.6 160 63.8
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 1.1e-40 170.2 161 63.4
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 2.5e-40 169.1 169 61.5
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 7.3e-40 167.5 123 72.4
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 1.6e-39 166.4 143 65.0
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 2.8e-39 165.6 127 69.3
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 2.8e-39 165.6 143 67.1
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 2.8e-39 165.6 127 68.5
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 6.2e-39 164.5 127 68.5
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 1.1e-38 163.7 142 64.1
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 1.1e-38 163.7 142 64.1
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 2.3e-38 162.5 146 65.8
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 2.3e-38 162.5 126 71.4
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 2.3e-38 162.5 143 64.3
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 2.3e-38 162.5 142 63.4
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 2.3e-38 162.5 146 63.0
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 2.3e-38 162.5 143 66.4
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 5.2e-38 161.4 145 64.8
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 5.2e-38 161.4 127 68.5
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 6.8e-38 161.0 147 63.3
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 8.9e-38 160.6 138 66.7
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 8.9e-38 160.6 108 74.1
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 8.9e-38 160.6 108 74.1
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 8.9e-38 160.6 108 74.1
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 1.2e-37 160.2 148 64.9
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.2e-37 160.2 173 57.8
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 1.5e-37 159.8 142 62.7
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 1.5e-37 159.8 142 63.4
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 1.5e-37 159.8 143 67.8
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 3.4e-37 158.7 152 63.8
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 3.4e-37 158.7 144 62.5
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 4.4e-37 158.3 141 63.1
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 4.4e-37 158.3 173 56.6
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 5.8e-37 157.9 127 66.1
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 5.8e-37 157.9 142 62.7
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 5.8e-37 157.9 123 67.5
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 9.9e-37 157.1 147 65.3
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 9.9e-37 157.1 123 67.5
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 9.9e-37 157.1 103 80.6
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 9.9e-37 157.1 152 63.2
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 1.3e-36 156.8 128 66.4
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 1.3e-36 156.8 146 61.0
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 1.3e-36 156.8 152 63.2
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 1.3e-36 156.8 141 62.4
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 1.3e-36 156.8 142 64.1
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 1.7e-36 156.4 125 68.8
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 2.2e-36 156.0 142 63.4
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 2.9e-36 155.6 145 64.1
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 2.9e-36 155.6 143 64.3
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 3.7e-36 155.2 142 64.8
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 3.7e-36 155.2 173 54.3
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 3.7e-36 155.2 141 58.9
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 6.4e-36 154.5 126 66.7
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 1.1e-35 153.7 150 59.3
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 1.1e-35 153.7 136 61.0
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 1.4e-35 153.3 141 58.2
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.4e-35 153.3 169 56.2
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 1.4e-35 153.3 154 57.1
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 1.4e-35 153.3 126 66.7
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 1.9e-35 152.9 145 60.7
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 2.4e-35 152.5 146 61.6
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 2.4e-35 152.5 126 66.7
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 3.2e-35 152.1 138 60.9
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 4.1e-35 151.8 141 58.2
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 4.1e-35 151.8 141 58.2
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 5.4e-35 151.4 141 58.2
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 5.4e-35 151.4 180 57.2
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 1.2e-34 150.2 141 56.7
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 1.2e-34 150.2 141 56.7
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 1.2e-34 150.2 146 60.3
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 1.2e-34 150.2 146 60.3
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 1.2e-34 150.2 146 60.3
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.6e-34 149.8 167 58.1
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.6e-34 149.8 169 56.2
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 1.6e-34 149.8 167 58.1
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 1.6e-34 149.8 125 64.0
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.6e-34 149.8 125 64.0
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.6e-34 149.8 125 64.0
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 1.6e-34 149.8 154 56.5
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 1.6e-34 149.8 157 56.7
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 2.1e-34 149.4 125 66.4
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 2.7e-34 149.1 141 58.2
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 2.7e-34 149.1 143 58.0
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 2.7e-34 149.1 125 62.4
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 4.6e-34 148.3 149 57.7
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 6.0e-34 147.9 147 58.5
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 1.7e-33 146.4 119 64.7
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 2.3e-33 146.0 144 62.5
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 2.3e-33 146.0 120 66.7
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 2.3e-33 146.0 124 66.1
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 3.9e-33 145.2 125 60.0
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 5.1e-33 144.8 121 65.3
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 1.1e-32 143.7 144 61.8
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 1.1e-32 143.7 146 58.9
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 1.9e-32 142.9 125 63.2
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 2.5e-32 142.5 118 66.9
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 4.3e-32 141.7 141 57.4
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 7.3e-32 141.0 166 56.0
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 7.3e-32 141.0 212 47.6
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 9.5e-32 140.6 120 61.7
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 1.2e-31 140.2 141 56.0
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 1.2e-31 140.2 116 67.2
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 2.8e-31 139.0 146 55.5
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 4.7e-31 138.3 117 61.5
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 4.0e-30 135.2 155 56.8
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 4.0e-30 135.2 140 55.0
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 5.2e-30 134.8 120 60.0
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 5.2e-30 134.8 144 53.5
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 8.9e-30 134.0 119 61.3
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 8.9e-30 134.0 116 62.9
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 1.5e-29 133.3 106 68.9
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 2.0e-29 132.9 105 69.5
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 3.4e-29 132.1 115 61.7
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 4.4e-29 131.7 127 59.1
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 9.9e-29 130.6 145 55.9
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 1.3e-28 130.2 143 57.3
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 2.9e-28 129.0 115 64.3
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 6.4e-28 127.9 187 45.5
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 3.2e-27 125.6 111 60.4
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 3.2e-27 125.6 154 51.3
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 7.1e-27 124.4 146 55.5
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 1.2e-26 123.6 138 54.3
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 2.7e-26 122.5 129 55.0
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 3.5e-26 122.1 120 57.5
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 4.6e-26 121.7 157 49.7
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 1.3e-25 120.2 155 47.1
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.3e-25 119.4 189 45.0
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 8.7e-25 117.5 106 61.3
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 1.5e-24 116.7 116 53.4
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 9.6e-24 114.0 125 53.6
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 1.6e-23 113.2 155 51.0
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 1.4e-22 110.2 111 57.7
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 1.4e-22 110.2 74 78.4
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 1.8e-22 109.8 118 49.2
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 3.1e-22 109.0 100 57.0
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 3.1e-22 109.0 101 59.4
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 3.0e-17 92.4 110 55.5
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 6.6e-17 91.3 95 55.8
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 1.1e-16 90.5 66 65.2
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 9.6e-16 87.4 66 63.6
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 1.3e-15 87.0 66 63.6
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 4.0e-14 82.0 70 67.1
DCAR_008576 Daucus carota HOM05D004437 ORTHO05D005401 1.2e-13 80.5 129 44.2
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 2.0e-13 79.7 125 37.6
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 2.0e-13 79.7 107 47.7
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 2.2e-12 76.3 60 66.7
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 2.2e-12 76.3 44 79.5
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 6.4e-12 74.7 131 38.9
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 7.9e-10 67.8 64 54.7
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 1.8e-09 66.6 58 62.1
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 1.1e-06 57.4 58 58.6


User provided reference genes

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