Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 0.0e+00 1934.1 974 100.0
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 0.0e+00 1428.3 812 90.6
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 0.0e+00 1159.1 822 74.8
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1148.3 831 73.9
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 0.0e+00 1141.7 831 73.8
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 0.0e+00 1140.9 825 73.6
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 0.0e+00 1139.8 820 73.5
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 0.0e+00 1134.4 817 74.4
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1134.0 831 73.0
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 0.0e+00 1132.5 822 73.4
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 0.0e+00 1130.9 812 74.0
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 0.0e+00 1128.6 814 73.8
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 0.0e+00 1125.9 764 76.8
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 0.0e+00 1122.5 809 73.9
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 0.0e+00 1121.7 772 75.3
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 0.0e+00 1119.4 827 73.2
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1116.3 817 73.1
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 0.0e+00 1113.6 812 73.2
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 0.0e+00 1112.4 817 72.3
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 0.0e+00 1112.4 758 76.6
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 0.0e+00 1109.7 818 72.9
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 0.0e+00 1107.8 820 71.3
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1105.9 767 75.0
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 0.0e+00 1105.1 826 71.5
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1102.8 826 71.1
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1101.7 815 72.3
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 0.0e+00 1101.3 804 73.1
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1100.1 765 74.8
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1099.0 820 71.7
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 0.0e+00 1095.5 747 77.1
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 0.0e+00 1094.3 807 71.5
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 0.0e+00 1090.5 829 70.1
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 0.0e+00 1088.6 812 71.3
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 0.0e+00 1086.2 809 70.7
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 0.0e+00 1082.8 833 70.3
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 0.0e+00 1082.8 819 70.3
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 0.0e+00 1080.5 739 75.8
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 0.0e+00 1078.5 794 71.5
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 0.0e+00 1077.4 807 70.6
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 0.0e+00 1076.6 815 69.6
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 6.7e-312 1073.5 839 68.7
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 3.6e-308 1061.6 757 72.8
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 3.6e-308 1061.6 800 70.4
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 4.7e-308 1061.2 832 69.2
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 1.8e-307 1059.3 807 69.0
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 1.8e-307 1059.3 804 69.4
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 2.6e-306 1055.4 829 68.9
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 7.5e-306 1053.9 803 70.0
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 9.8e-306 1053.5 815 69.2
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 3.7e-305 1051.6 729 75.4
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 1.9e-304 1049.3 812 70.1
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 1.6e-300 1036.2 763 72.9
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 2.3e-299 1032.3 825 67.8
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 1.3e-297 1026.5 775 69.5
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 2.2e-297 1025.8 808 67.0
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 3.2e-296 1021.9 822 66.3
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 5.4e-296 1021.1 822 67.8
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 7.1e-296 1020.8 761 70.7
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 1.6e-295 1019.6 822 67.5
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 1.6e-295 1019.6 753 71.4
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 2.1e-295 1019.2 773 70.1
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 1.3e-294 1016.5 761 70.3
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 1.3e-294 1016.5 761 70.3
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 3.9e-294 1015.0 698 75.5
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 6.6e-294 1014.2 761 70.2
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 4.3e-293 1011.5 766 69.3
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 2.1e-292 1009.2 762 70.2
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 1.1e-291 1006.9 814 67.3
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 1.8e-291 1006.1 805 67.2
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 4.4e-290 1001.5 802 66.8
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 5.8e-290 1001.1 820 66.1
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 9.9e-290 1000.3 706 73.7
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 2.9e-289 998.8 797 66.6
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 3.2e-288 995.3 751 71.1
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 7.1e-288 994.2 816 67.3
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 7.8e-287 990.7 820 66.0
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 1.3e-286 989.9 764 69.2
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 1.6e-284 983.0 827 65.3
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 2.1e-284 982.6 880 62.2
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 8.1e-284 980.7 820 65.6
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 1.1e-283 980.3 823 65.1
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 1.4e-283 979.9 824 65.0
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 2.4e-283 979.2 823 65.1
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 3.1e-283 978.8 825 65.2
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 4.0e-283 978.4 825 65.0
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 6.9e-283 977.6 821 65.2
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 9.0e-283 977.2 820 65.4
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 1.2e-282 976.9 819 65.4
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 1.9e-280 969.5 816 64.1
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 3.5e-279 965.3 809 64.4
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 2.3e-278 962.6 793 64.9
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 3.0e-278 962.2 819 64.6
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 1.6e-276 956.4 765 65.8
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 3.1e-275 952.2 773 64.9
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 5.3e-275 951.4 738 68.7
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 3.9e-270 935.3 778 64.9
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 1.4e-246 857.1 635 73.4
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.9e-240 836.6 606 71.1
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 1.2e-239 833.9 606 70.8
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 4.5e-226 788.9 768 54.6
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 4.5e-226 788.9 779 55.2
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.4e-222 777.3 769 54.4
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 8.8e-222 774.6 746 56.3
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 3.0e-214 749.6 577 63.6
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 8.8e-214 748.0 752 55.5
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 1.8e-203 713.8 638 58.0
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 7.0e-203 711.8 568 62.1
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.1e-192 677.9 599 58.4
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 5.4e-187 659.1 453 73.3
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 9.0e-166 588.6 437 70.3
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.4e-158 563.9 453 60.9
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 7.1e-147 525.8 382 70.9
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 3.6e-122 443.7 303 72.9
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 5.5e-99 366.7 711 35.7
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.0e-93 348.2 272 65.1
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 3.5e-93 347.4 535 39.6
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 4.5e-93 347.1 295 63.1
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 3.2e-86 324.3 668 39.2
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 2.2e-71 275.0 278 58.6
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 1.4e-65 255.8 370 44.3
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 2.6e-64 251.5 622 30.9
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 2.1e-42 178.7 100 81.0
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 7.4e-35 153.7 103 71.8
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 2.3e-28 132.1 158 51.9
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 1.1e-27 129.8 128 59.4
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 2.5e-22 112.1 55 87.3
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 7.9e-21 107.1 136 46.3
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 2.3e-20 105.5 103 56.3
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 5.3e-17 94.4 123 47.2
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 7.4e-11 73.9 75 58.7
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 7.4e-11 73.9 41 80.5
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 2.2e-10 72.4 108 43.5
MBI06_g27478_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 1.1e-09 70.1 408 24.8
PRCOL_00003060 Prasinoderma coloniale HOM05D008474 ORTHO05D010618 4.5e-08 64.7 327 24.5
Gohir.A01G040200 Gossypium hirsutum HOM05D008447 ORTHO05D010638 1.1e-06 60.1 254 24.4
Gohir.D01G027900 Gossypium hirsutum HOM05D008447 ORTHO05D010638 1.1e-06 60.1 256 24.6
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 3.2e-06 58.5 55 61.8
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 3.2e-06 58.5 80 43.8
Prupe.7G070400 Prunus persica HOM05D008447 ORTHO05D010638 3.2e-06 58.5 277 26.0
Pp3c3_2590 Physcomitrium patens HOM05D005554 ORTHO05D313840 7.2e-06 57.4 85 40.0
Gorai.002G037200 Gossypium raimondii HOM05D008447 ORTHO05D010638 9.4e-06 57.0 299 24.4


User provided reference genes

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