Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0046800 Salix brachista HOM05D004931 ORTHO05D006579 3.3e-141 505.0 247 100.0
Potri.001G067400 Populus trichocarpa HOM05D004931 ORTHO05D006579 6.3e-108 394.4 264 78.8
Potri.003G162600 Populus trichocarpa HOM05D004931 ORTHO05D006579 2.1e-103 379.4 249 78.7
Atru.chr12.1413 Acer truncatum HOM05D004931 ORTHO05D006579 1.3e-97 360.1 249 72.7
Ciclev10005352m.g Citrus clementina HOM05D004931 ORTHO05D006579 2.5e-96 355.9 249 73.1
Manes.08G101500 Manihot esculenta HOM05D004931 ORTHO05D006579 5.5e-96 354.8 249 72.7
Haze_12500 Corylus avellana HOM05D004931 ORTHO05D006579 3.6e-95 352.1 250 74.0
Prupe.1G215300 Prunus persica HOM05D004931 ORTHO05D006579 1.0e-94 350.5 249 73.5
Cfa009447 Carpinus fangiana HOM05D004931 ORTHO05D006579 1.8e-94 349.7 249 73.9
CiPaw.05G101400 Carya illinoinensis HOM05D004931 ORTHO05D006579 2.3e-94 349.4 249 71.9
MD00G1177400 Malus domestica HOM05D004931 ORTHO05D006579 3.0e-94 349.0 249 73.1
RcHm_v2.0_Chr4g0428911 Rosa chinensis HOM05D004931 ORTHO05D006579 6.8e-94 347.8 248 73.4
FvH4_4g22670 Fragaria vesca HOM05D004931 ORTHO05D006579 8.8e-94 347.4 249 73.1
MD13G1130400 Malus domestica HOM05D004931 ORTHO05D006579 1.5e-93 346.7 264 69.7
Thecc.02G192700 Theobroma cacao HOM05D004931 ORTHO05D006579 5.7e-93 344.7 249 71.5
COL.COLO4_21767 Corchorus olitorius HOM05D004931 ORTHO05D006579 9.8e-93 344.0 249 71.9
Dinv06619 Davidia involucrata HOM05D004931 ORTHO05D006579 1.7e-92 343.2 250 70.4
THA.LOC104814207 Tarenaya hassleriana HOM05D004931 ORTHO05D006579 1.7e-92 343.2 249 70.3
QL03p049374 Quercus lobata HOM05D004931 ORTHO05D006579 2.2e-92 342.8 271 67.2
Actinidia34703 Actinidia chinensis HOM05D004931 ORTHO05D006579 4.8e-92 341.7 251 72.1
Lj6A838G27 Lonicera japonica HOM05D004931 ORTHO05D006579 4.8e-92 341.7 253 71.9
TWI36G0173 Tripterygium wilfordii HOM05D004931 ORTHO05D006579 4.8e-92 341.7 255 70.6
Duzib248G0794 Durio zibethinus HOM05D004931 ORTHO05D006579 6.3e-92 341.3 249 71.5
CSS0024647 Camellia sinensis var. sinensis HOM05D004931 ORTHO05D006579 1.4e-91 340.1 249 71.1
Carub.0001s2655 Capsella rubella HOM05D004931 ORTHO05D006579 2.4e-91 339.3 248 70.6
Psat1g210240 Pisum sativum HOM05D004931 ORTHO05D006579 3.1e-91 339.0 249 69.9
Gohir.D02G175400 Gossypium hirsutum HOM05D004931 ORTHO05D006579 5.4e-91 338.2 249 70.7
ClCG07G011910 Citrullus lanatus HOM05D004931 ORTHO05D006579 9.1e-91 337.4 254 68.9
Medtr2g011420 Medicago truncatula HOM05D004931 ORTHO05D006579 1.2e-90 337.0 249 71.1
Thhalv10008031m.g Eutrema salsugineum HOM05D004931 ORTHO05D006579 2.0e-90 336.3 248 69.8
AL1G41640 Arabidopsis lyrata HOM05D004931 ORTHO05D006579 2.7e-90 335.9 250 69.6
PGR102G0149 Punica granatum HOM05D004931 ORTHO05D006579 3.5e-90 335.5 250 70.0
Sp1g24310 Schrenkiella parvula HOM05D004931 ORTHO05D006579 3.5e-90 335.5 248 69.8
AUR62028841 Chenopodium quinoa HOM05D004931 ORTHO05D006579 4.5e-90 335.1 249 70.7
Gorai.005G197000 Gossypium raimondii HOM05D004931 ORTHO05D006579 4.5e-90 335.1 249 70.3
AT1G28120 Arabidopsis thaliana HOM05D004931 ORTHO05D006579 5.9e-90 334.7 279 63.8
Gohir.A03G152300 Gossypium hirsutum HOM05D004931 ORTHO05D006579 7.7e-90 334.3 249 69.9
CsaV3_4G002250 Cucumis sativus L. HOM05D004931 ORTHO05D006579 1.0e-89 334.0 249 69.9
CARHR027590 Cardamine hirsuta HOM05D004931 ORTHO05D006579 1.3e-89 333.6 248 69.4
AUR62005713 Chenopodium quinoa HOM05D004931 ORTHO05D006579 1.3e-89 333.6 249 69.9
TAR374G0634 Trochodendron aralioides HOM05D004931 ORTHO05D006579 1.3e-89 333.6 249 69.1
MBI07_g35974_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 1.7e-89 333.2 225 72.4
Ca_00224_v3 Cicer arietinum L. HOM05D004931 ORTHO05D006579 2.2e-89 332.8 248 69.0
PSO478G0594 Papaver somniferum HOM05D004931 ORTHO05D006579 2.2e-89 332.8 249 68.3
PSO017G2176 Papaver somniferum HOM05D004931 ORTHO05D006579 2.9e-89 332.4 249 67.9
Nn3g16276 Nelumbo nucifera HOM05D004931 ORTHO05D006579 5.0e-89 331.6 249 67.1
Cpa.g.sc38.82 Carica papaya HOM05D004931 ORTHO05D006579 6.5e-89 331.3 249 69.5
Sed0000722 Sechium edule HOM05D004931 ORTHO05D006579 1.1e-88 330.5 250 69.2
MELO3C017814.2 Cucumis melo HOM05D004931 ORTHO05D006579 1.5e-88 330.1 249 69.1
Glyma.15G065800 Glycine max HOM05D004931 ORTHO05D006579 1.9e-88 329.7 249 68.7
Manes.09G188000 Manihot esculenta HOM05D004931 ORTHO05D006579 1.9e-88 329.7 249 69.5
TPR.G19613 Trifolium pratense HOM05D004931 ORTHO05D006579 2.5e-88 329.3 249 69.1
VMungo0540G0694 Vigna mungo HOM05D004931 ORTHO05D006579 3.2e-88 328.9 249 69.5
BcaB03g12136 Brassica carinata HOM05D004931 ORTHO05D006579 4.2e-88 328.6 249 69.5
Glyma.13G248100 Glycine max HOM05D004931 ORTHO05D006579 5.5e-88 328.2 249 68.3
TAR622G0753 Trochodendron aralioides HOM05D004931 ORTHO05D006579 5.5e-88 328.2 251 68.1
BolC3t19725H Brassica oleracea HOM05D004931 ORTHO05D006579 2.1e-87 326.2 249 69.1
Aa31sc45G20 Aethionema arabicum HOM05D004931 ORTHO05D006579 2.7e-87 325.9 248 67.7
Cc11_g15020 Coffea canephora HOM05D004931 ORTHO05D006579 6.1e-87 324.7 249 66.3
BcaC01g00008 Brassica carinata HOM05D004931 ORTHO05D006579 1.0e-86 323.9 249 68.3
Rhsim09G0128100 Rhododendron simsii HOM05D004931 ORTHO05D006579 1.0e-86 323.9 312 58.7
ECA238G3692 Erigeron canadensis HOM05D004931 ORTHO05D006579 1.4e-86 323.6 263 64.6
Lj6g0004184 Lotus japonicus HOM05D004931 ORTHO05D006579 1.4e-86 323.6 249 67.9
C03p74760 Brassica napus HOM05D004931 ORTHO05D006579 1.8e-86 323.2 274 63.5
vmacro10419 Vaccinium macrocarpon HOM05D004931 ORTHO05D006579 1.8e-86 323.2 276 64.1
GSVIVG01001087001 Vitis vinifera HOM05D004931 ORTHO05D006579 1.8e-86 323.2 251 66.1
HanXRQChr17g0559151 Helianthus annuus HOM05D004931 ORTHO05D006579 3.0e-86 322.4 251 67.7
CANSAT01G2308 Cannabis sativa HOM05D004931 ORTHO05D006579 4.0e-86 322.0 250 66.8
BcaB03g13953 Brassica carinata HOM05D004931 ORTHO05D006579 6.8e-86 321.2 265 65.3
Phvul.006G193900 Phaseolus vulgaris HOM05D004931 ORTHO05D006579 6.8e-86 321.2 250 68.0
A08p25870 Brassica napus HOM05D004931 ORTHO05D006579 8.8e-86 320.9 274 63.5
arahy.Tifrunner.gnm1.ann1.BF7HNV Arachis hypogaea HOM05D004931 ORTHO05D006579 1.2e-85 320.5 249 66.3
arahy.Tifrunner.gnm1.ann1.Q671IP Arachis hypogaea HOM05D004931 ORTHO05D006579 1.2e-85 320.5 249 66.3
EL10Ac6g13609 Beta vulgaris HOM05D004931 ORTHO05D006579 1.2e-85 320.5 249 66.7
Aqoxy5G03136 Aquilegia oxysepala HOM05D004931 ORTHO05D006579 5.7e-85 318.2 249 65.1
DCAR_024966 Daucus carota HOM05D004931 ORTHO05D006579 2.2e-84 316.2 228 70.6
Ah.02g131420 Amaranthus hybridus HOM05D004931 ORTHO05D006579 1.1e-83 313.9 247 67.6
SalBow2G3164 Salvia bowleyana HOM05D004931 ORTHO05D006579 1.8e-83 313.2 284 58.8
MSTRG.455 Avicennia marina HOM05D004931 ORTHO05D006579 5.4e-83 311.6 249 64.3
CDE05G3195 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 9.1e-83 310.8 252 63.9
Lsat_1_v5_gn_2_17061 Lactuca sativa HOM05D004931 ORTHO05D006579 9.1e-83 310.8 257 65.0
Os08g0537800 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D006579 1.2e-82 310.5 249 63.9
FAN17G1056 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.6e-82 310.1 232 70.7
FAN07G1868 Fragaria x ananassa HOM05D004931 ORTHO05D006579 2.0e-82 309.7 241 68.0
CDE05G1203 Ceratophyllum demersum HOM05D004931 ORTHO05D006579 7.7e-82 307.8 251 63.7
BraA08t34541Z Brassica rapa HOM05D004931 ORTHO05D006579 2.3e-81 306.2 274 62.0
Migut.K01057 Erythranthe guttata HOM05D004931 ORTHO05D006579 2.3e-81 306.2 251 65.3
Sc14g0009240 Simmondsia chinensis HOM05D004931 ORTHO05D006579 2.9e-81 305.8 251 62.5
SGA_v2.0_scaffold80G25951 Striga asiatica HOM05D004931 ORTHO05D006579 3.3e-80 302.4 249 65.1
SGA_v2.0_scaffold81G25976 Striga asiatica HOM05D004931 ORTHO05D006579 3.3e-80 302.4 257 63.4
Solyc04g045480.3 Solanum lycopersicum HOM05D004931 ORTHO05D006579 9.5e-80 300.8 249 63.1
Zm00001eb175560 Zea mays HOM05D004931 ORTHO05D006579 9.5e-80 300.8 251 62.2
Sopen04g017340 Solanum pennellii HOM05D004931 ORTHO05D006579 4.0e-78 295.4 249 61.8
FAN12G1488 Fragaria x ananassa HOM05D004931 ORTHO05D006579 1.3e-76 290.4 208 72.6
HPP92_011736 Vanilla planifolia HOM05D004931 ORTHO05D006579 7.0e-75 284.6 250 58.4
unitig_8.g2895 Utricularia gibba HOM05D004931 ORTHO05D006579 9.2e-75 284.3 251 59.8
BolC7t42231H Brassica oleracea HOM05D004931 ORTHO05D006579 3.5e-74 282.3 250 61.6
C07p17280 Brassica napus HOM05D004931 ORTHO05D006579 2.3e-73 279.6 250 61.6
CAN.G465.9 Capsicum annuum HOM05D004931 ORTHO05D006579 6.6e-73 278.1 263 56.7
Nitab4.5_0007183g0010 Nicotiana tabacum HOM05D004931 ORTHO05D006579 2.5e-72 276.2 251 59.8
SEGI_13679 Sequoiadendron giganteum HOM05D004931 ORTHO05D006579 3.3e-72 275.8 250 58.0
Peaxi162Scf00128g01757 Petunia axillaris HOM05D004931 ORTHO05D006579 9.5e-72 274.2 251 58.2
BcaC06g35334 Brassica carinata HOM05D004931 ORTHO05D006579 1.5e-69 266.9 250 59.2
AagrBONN_evm.TU.Sc2ySwM_368.2426 Anthoceros agrestis HOM05D004931 ORTHO05D006579 4.4e-69 265.4 251 55.8
Duzib132G0410 Durio zibethinus HOM05D004931 ORTHO05D006579 7.5e-69 264.6 177 76.8
ATR0582G144 Amborella trichopoda HOM05D004931 ORTHO05D006579 1.4e-67 260.4 249 55.8
Hund26708 Selenicereus undatus HOM05D004931 ORTHO05D006579 1.6e-66 256.9 248 57.3
HPP92_011677 Vanilla planifolia HOM05D004931 ORTHO05D006579 1.3e-65 253.8 233 56.7
MBI10_g42797_MAGBIO Magnolia biondii HOM05D004931 ORTHO05D006579 1.7e-65 253.4 247 54.3
Lalb_Chr15g0090151 Lupinus albus HOM05D004931 ORTHO05D006579 2.8e-63 246.1 203 64.5
Mapoly0005s0248 Marchantia polymorpha HOM05D004931 ORTHO05D006579 4.7e-63 245.4 260 50.8
Nitab4.5_0001408g0040 Nicotiana tabacum HOM05D004931 ORTHO05D006579 4.7e-63 245.4 215 62.8
SMO358G0085 Selaginella moellendorffii HOM05D004931 ORTHO05D006579 4.7e-63 245.4 251 51.8
AagrBONN_evm.TU.Sc2ySwM_26.3 Anthoceros agrestis HOM05D004931 ORTHO05D006579 9.8e-61 237.7 222 56.3
Pp3c5_2520 Physcomitrium patens HOM05D004931 ORTHO05D006579 4.1e-59 232.3 258 49.6
Pp3c6_24540 Physcomitrium patens HOM05D004931 ORTHO05D006579 3.5e-58 229.2 249 50.2
Sed0016914 Sechium edule HOM05D004931 ORTHO05D006579 1.4e-51 207.2 126 81.0
PSO832G0491 Papaver somniferum HOM05D004931 ORTHO05D006579 3.0e-49 199.5 219 52.5
Dinv02758 Davidia involucrata HOM05D004931 ORTHO05D006579 3.9e-49 199.1 126 77.0
Actinidia31350 Actinidia chinensis HOM05D004931 ORTHO05D006579 2.4e-46 189.9 172 62.8
BraA07t28936Z Brassica rapa HOM05D004931 ORTHO05D006579 4.0e-38 162.5 250 42.4
A07p11470 Brassica napus HOM05D004931 ORTHO05D006579 5.3e-38 162.2 249 42.6
Cre10.g441500 Chlamydomonas reinhardtii HOM05D004931 ORTHO05D006579 5.3e-38 162.2 265 37.4
PRCOL_00001027 Prasinoderma coloniale HOM05D004931 ORTHO05D006579 1.4e-35 154.1 248 39.1
RcHm_v2.0_Chr7g0205601 Rosa chinensis HOM05D004931 ORTHO05D006579 1.4e-35 154.1 88 83.0
Lalb_Chr18g0060061 Lupinus albus HOM05D004931 ORTHO05D006579 2.1e-34 150.2 88 80.7
PGSC0003DMG401006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 5.1e-33 145.6 93 72.0
Haze_27431 Corylus avellana HOM05D004931 ORTHO05D006579 2.1e-31 140.2 245 36.7
Eucgr.B03557 Eucalyptus grandis HOM05D004931 ORTHO05D006579 6.2e-31 138.7 88 72.7
PGSC0003DMG402006689 Solanum tuberosum HOM05D004931 ORTHO05D006579 7.1e-27 125.2 90 67.8
PSO170G5257 Papaver somniferum HOM05D004650 ORTHO05D005715 1.3e-25 120.9 90 64.4
ECA238G1930 Erigeron canadensis HOM05D000406 ORTHO05D006918 2.6e-21 106.7 73 69.9
TPR.G382 Trifolium pratense HOM05D004931 ORTHO05D006579 8.4e-20 101.7 54 87.0
CBR_g45420 Chara braunii HOM05D000019 ORTHO05D000048 9.3e-19 98.2 93 54.8
Zm00001eb406040 Zea mays HOM05D004931 ORTHO05D006579 3.5e-18 96.3 293 26.6
TPR.G19900 Trifolium pratense HOM05D004931 ORTHO05D006579 1.3e-15 87.8 54 79.6
Zm00001eb037020 Zea mays HOM05D004931 ORTHO05D006579 4.1e-14 82.8 51 70.6
Zm00001eb406050 Zea mays HOM05D004931 ORTHO05D444756 1.5e-13 80.9 211 27.5
Solyc03g059395.1 Solanum lycopersicum HOM05D004931 ORTHO05D006579 5.0e-12 75.9 51 64.7
Os04g0652600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D299584 1.4e-11 74.3 318 25.2
Lalb_Chr18g0060051 Lupinus albus HOM05D004931 ORTHO05D006579 4.2e-11 72.8 47 70.2
Os02g0521600 Oryza sativa ssp. japonica HOM05D004931 ORTHO05D037234 4.6e-10 69.3 263 24.3
Zm00001eb242070 Zea mays HOM05D004931 ORTHO05D037234 3.3e-08 63.2 237 25.7
FAN01G2784 Fragaria x ananassa HOM05D005362 ORTHO05D006895 4.3e-08 62.8 64 50.0
Sopen03g014100 Solanum pennellii HOM05D004931 ORTHO05D006579 9.7e-08 61.6 41 68.3
TPR.G399 Trifolium pratense HOM05D004931 ORTHO05D006579 2.8e-07 60.1 54 57.4
Cre06.g253459 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D146359 3.1e-06 56.6 68 38.2
Cre06.g253755 Chlamydomonas reinhardtii HOM05D018811 ORTHO05D145199 3.1e-06 56.6 68 38.2


User provided reference genes

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