Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 2585.4 1225 100.0
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 2209.5 1225 86.7
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 0.0e+00 2033.5 1228 79.0
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 0.0e+00 1978.4 1232 77.2
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 0.0e+00 1862.0 1227 72.1
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1803.9 1225 69.4
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 0.0e+00 1801.2 1225 69.8
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 0.0e+00 1801.2 1225 69.1
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 0.0e+00 1794.2 1229 69.0
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 0.0e+00 1790.8 1225 69.1
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 0.0e+00 1786.5 1223 68.9
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 0.0e+00 1785.8 1225 68.5
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 0.0e+00 1781.5 1229 68.7
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 0.0e+00 1778.1 1229 69.3
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 0.0e+00 1770.4 1221 68.5
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1770.4 1221 68.5
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 0.0e+00 1769.6 1225 68.4
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 0.0e+00 1763.4 1229 68.3
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1752.3 1224 68.0
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 0.0e+00 1738.8 1225 67.3
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 0.0e+00 1734.9 1228 66.3
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1721.4 1225 66.0
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1717.6 1232 66.5
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1708.7 1228 66.8
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 0.0e+00 1703.3 1228 64.9
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 0.0e+00 1699.1 1158 69.4
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 0.0e+00 1686.8 1224 64.4
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 0.0e+00 1683.7 1225 64.4
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 0.0e+00 1681.4 1229 64.4
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1680.2 1153 68.1
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 0.0e+00 1677.1 1221 64.0
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1676.4 1222 64.2
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 0.0e+00 1675.6 1222 64.7
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 0.0e+00 1675.2 1223 64.0
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 0.0e+00 1674.8 1214 65.0
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 0.0e+00 1672.9 1223 64.3
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 0.0e+00 1667.1 1225 64.4
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 0.0e+00 1667.1 1223 63.5
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 0.0e+00 1666.4 1223 63.9
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1666.4 1215 64.3
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 0.0e+00 1666.0 1215 64.1
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1665.6 1230 64.5
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 0.0e+00 1664.8 1225 64.9
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 0.0e+00 1663.7 1215 64.1
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 0.0e+00 1662.5 1215 64.0
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 0.0e+00 1662.5 1223 64.5
FAN10G2928 Fragaria x ananassa HOM05D005112 ORTHO05D006681 0.0e+00 1661.4 1221 65.6
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 0.0e+00 1656.3 1235 63.2
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 0.0e+00 1655.2 1226 63.6
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1652.1 1223 64.0
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 0.0e+00 1650.6 1212 63.9
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 0.0e+00 1645.6 1225 62.9
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 0.0e+00 1645.6 1226 63.9
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 0.0e+00 1644.0 1226 62.5
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 0.0e+00 1643.6 1224 63.7
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1641.3 1220 64.2
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 0.0e+00 1640.9 1224 62.6
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 0.0e+00 1640.2 1241 63.3
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 0.0e+00 1640.2 1224 62.8
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 0.0e+00 1639.4 1220 63.9
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 0.0e+00 1639.0 1227 62.8
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 0.0e+00 1636.7 1224 62.7
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 0.0e+00 1635.2 1223 63.1
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 0.0e+00 1635.2 1229 63.5
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 0.0e+00 1632.8 1226 63.5
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 0.0e+00 1623.6 1221 64.5
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 0.0e+00 1622.4 1220 62.7
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 0.0e+00 1618.2 1133 67.0
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 0.0e+00 1610.9 1229 61.5
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 0.0e+00 1610.9 1207 63.0
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 0.0e+00 1608.6 1157 65.5
SGA_v2.0_scaffold124G33611 Striga asiatica HOM05D005112 ORTHO05D006681 0.0e+00 1605.9 1236 61.7
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 0.0e+00 1603.2 1076 70.6
EL10Ac2g02802 Beta vulgaris HOM05D005112 ORTHO05D006681 0.0e+00 1600.9 1207 62.6
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 0.0e+00 1588.9 1214 61.6
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 0.0e+00 1587.8 1198 62.9
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 0.0e+00 1580.1 1237 59.5
AUR62026862 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1579.7 1207 62.0
AUR62032651 Chenopodium quinoa HOM05D005112 ORTHO05D006681 0.0e+00 1577.0 1205 62.1
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 0.0e+00 1551.6 1252 59.6
ECA238G0687 Erigeron canadensis HOM05D005112 ORTHO05D006681 0.0e+00 1540.4 1206 61.4
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 0.0e+00 1538.1 1234 59.7
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 0.0e+00 1490.3 1217 57.9
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 0.0e+00 1476.8 1078 64.9
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 0.0e+00 1466.8 1273 58.0
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 0.0e+00 1454.5 964 71.3
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 0.0e+00 1426.0 1192 57.1
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 0.0e+00 1410.6 1002 66.8
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 0.0e+00 1273.5 1119 55.5
Ciclev10027821m.g Citrus clementina HOM05D005112 ORTHO05D006681 0.0e+00 1247.6 918 66.1
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 0.0e+00 1236.9 1251 48.4
Mapoly0086s0033 Marchantia polymorpha HOM05D005112 ORTHO05D006681 0.0e+00 1227.2 1213 50.5
SMO266G0060 Selaginella moellendorffii HOM05D005112 ORTHO05D006681 0.0e+00 1226.8 1221 49.7
TAR636G2362 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1224.9 918 63.5
Hma1.2p1_1202F.1_g266830 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 0.0e+00 1184.9 835 66.6
vmacro12696 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 0.0e+00 1133.2 843 65.0
TAR636G0153 Trochodendron aralioides HOM05D005112 ORTHO05D006681 0.0e+00 1124.4 825 64.0
AagrBONN_evm.TU.Sc2ySwM_368.212 Anthoceros agrestis HOM05D005112 ORTHO05D006681 0.0e+00 1114.4 1243 46.3
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 0.0e+00 1097.8 729 70.4
CBR_g32018 Chara braunii HOM05D005112 ORTHO05D006681 1.5e-290 1003.4 1249 43.0
FAN10G3804 Fragaria x ananassa HOM05D005112 ORTHO05D006681 6.6e-283 978.0 739 64.0
HPP92_012095 Vanilla planifolia HOM05D005112 ORTHO05D006681 7.6e-247 858.2 747 56.4
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 1.0e-235 821.2 530 71.7
Nitab4.5_0002123g0040 Nicotiana tabacum HOM05D005112 ORTHO05D006681 2.3e-211 740.3 620 57.1
Hund27782 Selenicereus undatus HOM05D005112 ORTHO05D006681 5.5e-205 719.2 580 59.3
Hund27779 Selenicereus undatus HOM05D005112 ORTHO05D006681 1.4e-203 714.5 580 59.3
vmacro12695 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 6.2e-156 556.2 391 66.8
Cre08.g379450 Chlamydomonas reinhardtii HOM05D005112 ORTHO05D006681 4.4e-154 550.1 1484 29.5
MCO01G649 Micromonas commoda HOM05D005112 ORTHO05D006681 8.7e-142 509.2 637 44.4
Ciclev10030068m.g Citrus clementina HOM05D005112 ORTHO05D006681 1.3e-132 478.8 313 70.6
TAR636G0412 Trochodendron aralioides HOM05D005112 ORTHO05D006681 5.1e-118 430.3 301 67.1
Nitab4.5_0002123g0060 Nicotiana tabacum HOM05D005112 ORTHO05D006681 3.7e-108 397.5 305 62.3
Haze_03042 Corylus avellana HOM05D005112 ORTHO05D006681 1.7e-105 388.7 890 31.6
PRCOL_00006392 Prasinoderma coloniale HOM05D005112 ORTHO05D006681 8.5e-105 386.3 615 39.2
Atru.chr12.1338 Acer truncatum HOM05D005112 ORTHO05D006681 8.3e-84 316.6 249 62.2
CDE08G0398 Ceratophyllum demersum HOM05D005112 ORTHO05D006681 5.0e-81 307.4 312 48.1
RcHm_v2.0_Chr1g0324211 Rosa chinensis HOM05D005112 ORTHO05D006681 6.6e-81 307.0 229 62.4
ATR0980G001 Amborella trichopoda HOM05D005112 ORTHO05D006681 7.5e-77 293.5 208 67.3
MD07G1040100 Malus domestica HOM05D005112 ORTHO05D006681 1.7e-76 292.4 207 68.6
Nitab4.5_0002123g0050 Nicotiana tabacum HOM05D005112 ORTHO05D006681 1.1e-67 263.1 156 71.2
MD07G1040000 Malus domestica HOM05D005112 ORTHO05D006681 3.1e-62 245.0 164 73.2
Cpa.g.sc540.4 Carica papaya HOM05D005112 ORTHO05D006681 1.2e-61 243.0 143 72.0
SEGI_06402 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 4.6e-58 231.1 208 52.4
Hma1.2p1_1202F.1_g266800 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 1.1e-43 183.3 152 55.3
MD07G1039900 Malus domestica HOM05D005112 ORTHO05D006681 6.2e-39 167.5 153 54.9
Lsat_1_v5_gn_3_3641 Lactuca sativa HOM05D005112 ORTHO05D003508 3.8e-36 158.3 124 60.5
Lsat_1_v5_gn_3_132500 Lactuca sativa HOM05D005112 ORTHO05D001778 1.2e-34 153.3 109 67.9
ATR0980G009 Amborella trichopoda HOM05D005112 ORTHO05D006681 3.5e-34 151.8 105 61.0
Lsat_1_v5_gn_2_30340 Lactuca sativa HOM05D005112 ORTHO05D006681 4.3e-32 144.8 82 75.6
Lsat_1_v5_gn_2_52800 Lactuca sativa HOM05D005112 ORTHO05D006681 7.3e-32 144.1 69 87.0
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 3.6e-31 141.7 70 84.3
CSS0018226 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 6.2e-31 141.0 84 75.0
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 8.1e-31 140.6 69 85.5
Thecc.10G156500 Theobroma cacao HOM05D005112 ORTHO05D006681 5.3e-30 137.9 132 54.5
SEGI_07839 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 6.9e-30 137.5 142 46.5
Lsat_1_v5_gn_3_137840 Lactuca sativa HOM05D005112 ORTHO05D036434 2.2e-28 132.5 141 51.1
SEGI_07313 Sequoiadendron giganteum HOM05D005112 ORTHO05D006681 5.1e-25 121.3 75 66.7
FvH4_4g11040 Fragaria vesca HOM05D005112 ORTHO05D006681 4.8e-23 114.8 96 57.3
Lsat_1_v5_gn_9_95981 Lactuca sativa HOM05D005112 ORTHO05D036434 1.1e-22 113.6 118 52.5
CSS0001243 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 1.5e-21 109.8 53 86.8
Lsat_1_v5_gn_9_73420 Lactuca sativa HOM05D001315 ORTHO05D001618 7.6e-21 107.5 66 71.2
Lsat_1_v5_gn_4_185820 Lactuca sativa HOM05D012196 ORTHO05D016147 1.1e-16 93.6 98 46.9
Lsat_1_v5_gn_1_115820 Lactuca sativa HOM05D005112 ORTHO05D036434 1.9e-16 92.8 136 42.6
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 1.6e-15 89.7 182 32.4
Lsat_1_v5_gn_4_82640 Lactuca sativa HOM05D001821 ORTHO05D001778 2.1e-15 89.4 45 80.0
Lsat_1_v5_gn_8_160861 Lactuca sativa HOM05D000295 ORTHO05D000188 2.1e-15 89.4 45 80.0
Lsat_1_v5_gn_8_105280 Lactuca sativa HOM05D000295 ORTHO05D000188 2.8e-15 89.0 45 80.0
Lsat_1_v5_gn_4_23800 Lactuca sativa HOM05D000069 ORTHO05D016147 1.4e-14 86.7 45 80.0
Lsat_1_v5_gn_9_100881 Lactuca sativa HOM05D005112 ORTHO05D016147 5.3e-14 84.7 48 72.9
Lsat_1_v5_gn_3_85321 Lactuca sativa HOM05D000295 ORTHO05D006681 1.2e-13 83.6 45 75.6
Actinidia21519 Actinidia chinensis HOM05D000850 ORTHO05D000266 1.1e-11 77.0 50 64.0
BcaC08g43326 Brassica carinata HOM05D005112 ORTHO05D006681 2.8e-07 62.4 61 52.5
C08p29650 Brassica napus HOM05D000711 ORTHO05D000545 9.0e-06 57.4 40 65.0
BolC8t50571H Brassica oleracea HOM05D000711 ORTHO05D000545 9.0e-06 57.4 40 65.0
BolC8t50574H Brassica oleracea HOM05D000711 ORTHO05D000545 9.0e-06 57.4 40 65.0


User provided reference genes

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