Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G1089 Selaginella moellendorffii HOM05D006097 ORTHO05D008538 0.0e+00 1149.0 565 100.0
SMO367G0062 Selaginella moellendorffii HOM05D006097 ORTHO05D005621 2.5e-224 782.3 557 77.0
SEGI_19069 Sequoiadendron giganteum HOM05D006097 ORTHO05D008538 1.2e-162 577.4 560 52.0
CAN.G176.2 Capsicum annuum HOM05D006097 ORTHO05D008538 2.0e-162 576.6 549 51.7
AagrBONN_evm.TU.Sc2ySwM_340.253 Anthoceros agrestis HOM05D006097 ORTHO05D008538 4.6e-162 575.5 539 54.2
Nitab4.5_0001621g0010 Nicotiana tabacum HOM05D006097 ORTHO05D008538 4.3e-160 568.9 570 50.0
Hund13358 Selenicereus undatus HOM05D006097 ORTHO05D008538 1.6e-159 567.0 561 51.7
Dinv22036 Davidia involucrata HOM05D006097 ORTHO05D008538 2.1e-159 566.6 566 50.5
Actinidia21518 Actinidia chinensis HOM05D006097 ORTHO05D008538 3.6e-159 565.8 540 52.8
PSO339G1331 Papaver somniferum HOM05D006097 ORTHO05D008538 4.7e-159 565.5 534 50.6
Sopen08g005450 Solanum pennellii HOM05D006097 ORTHO05D008538 4.7e-159 565.5 547 50.6
Peaxi162Scf00767g00518 Petunia axillaris HOM05D006097 ORTHO05D008538 6.2e-159 565.1 534 51.1
CiPaw.14G007600 Carya illinoinensis HOM05D006097 ORTHO05D008538 1.8e-158 563.5 558 50.7
Haze_03039 Corylus avellana HOM05D006097 ORTHO05D008538 5.2e-158 562.0 537 51.8
CANSAT56G2143 Cannabis sativa HOM05D006097 ORTHO05D008538 1.5e-157 560.5 560 50.0
Os01g0952700 Oryza sativa ssp. japonica HOM05D006097 ORTHO05D008538 1.5e-157 560.5 536 50.2
Prupe.2G036100 Prunus persica HOM05D006097 ORTHO05D008538 2.6e-157 559.7 548 51.1
Atru.chr7.628 Acer truncatum HOM05D006097 ORTHO05D008538 7.5e-157 558.1 537 51.6
HanXRQChr04g0113861 Helianthus annuus HOM05D006097 ORTHO05D008538 1.4e-155 553.9 571 48.7
QL04p017855 Quercus lobata HOM05D006097 ORTHO05D008538 1.4e-155 553.9 537 51.0
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 1.9e-155 553.5 540 49.8
Psat5g221440 Pisum sativum HOM05D006097 ORTHO05D008538 1.9e-155 553.5 572 48.8
ECA236G3136 Erigeron canadensis HOM05D006097 ORTHO05D008538 2.4e-155 553.1 562 49.5
RcHm_v2.0_Chr1g0324291 Rosa chinensis HOM05D006097 ORTHO05D008538 3.2e-155 552.7 546 50.4
MD07G1040200 Malus domestica HOM05D006097 ORTHO05D008538 5.4e-155 552.0 566 48.9
Cc02_g30220 Coffea canephora HOM05D006097 ORTHO05D008538 9.2e-155 551.2 538 50.6
Ciclev10004623m.g Citrus clementina HOM05D006097 ORTHO05D008538 1.6e-154 550.4 534 51.1
PGR031G1965 Punica granatum HOM05D006097 ORTHO05D008538 1.6e-154 550.4 537 51.6
Cfa010917 Carpinus fangiana HOM05D006097 ORTHO05D008538 2.0e-154 550.1 570 49.6
ATR0745G019 Amborella trichopoda HOM05D006097 ORTHO05D008538 2.7e-154 549.7 564 48.6
Gohir.D06G184900 Gossypium hirsutum HOM05D006097 ORTHO05D008538 4.6e-154 548.9 569 48.7
Migut.N01845 Erythranthe guttata HOM05D006097 ORTHO05D008538 6.0e-154 548.5 574 49.3
Manes.04G159300 Manihot esculenta HOM05D006097 ORTHO05D008538 7.8e-154 548.1 534 51.5
Gorai.010G216200 Gossypium raimondii HOM05D006097 ORTHO05D008538 1.7e-153 547.0 571 48.9
THA.LOC104826726 Tarenaya hassleriana HOM05D006097 ORTHO05D008538 1.7e-153 547.0 534 49.8
Gohir.A06G175000 Gossypium hirsutum HOM05D006097 ORTHO05D008538 2.3e-153 546.6 534 50.0
SMO343G0029 Selaginella moellendorffii HOM05D004978 ORTHO05D005621 6.6e-153 545.0 501 62.7
SGA_v2.0_scaffold232G43504 Striga asiatica HOM05D006097 ORTHO05D008538 8.6e-153 544.7 572 48.6
HPP92_013975 Vanilla planifolia HOM05D006097 ORTHO05D008538 1.1e-152 544.3 537 50.5
Medtr3g014750 Medicago truncatula HOM05D006097 ORTHO05D008538 1.5e-152 543.9 567 48.0
FAN01G0546 Fragaria x ananassa HOM05D006097 ORTHO05D008538 1.9e-152 543.5 560 48.9
Ah.12g062830 Amaranthus hybridus HOM05D006097 ORTHO05D008538 3.3e-152 542.7 534 49.8
Duzib114G0946 Durio zibethinus HOM05D006097 ORTHO05D008538 3.3e-152 542.7 534 50.0
GSVIVG01013488001 Vitis vinifera HOM05D006097 ORTHO05D008538 4.3e-152 542.3 538 50.6
Thecc.10G154600 Theobroma cacao HOM05D006097 ORTHO05D008538 5.6e-152 542.0 567 48.7
BraA04t16135Z Brassica rapa HOM05D006097 ORTHO05D008538 7.3e-152 541.6 530 50.9
Nn2g14836 Nelumbo nucifera HOM05D006097 ORTHO05D008538 9.5e-152 541.2 562 49.3
TPR.G17806 Trifolium pratense HOM05D006097 ORTHO05D008538 1.2e-151 540.8 572 48.1
AUR62032650 Chenopodium quinoa HOM05D006097 ORTHO05D008538 2.8e-151 539.7 565 47.6
Aa31LG10G10820 Aethionema arabicum HOM05D006097 ORTHO05D008538 3.6e-151 539.3 530 49.4
C04p36530 Brassica napus HOM05D006097 ORTHO05D008538 3.6e-151 539.3 550 49.6
Potri.003G196300 Populus trichocarpa HOM05D006097 ORTHO05D008538 3.6e-151 539.3 533 48.6
A04p04190 Brassica napus HOM05D006097 ORTHO05D008538 1.1e-150 537.7 530 50.8
BcaB02g08396 Brassica carinata HOM05D006097 ORTHO05D008538 1.8e-150 537.0 530 50.2
COL.COLO4_20657 Corchorus olitorius HOM05D006097 ORTHO05D008538 4.0e-150 535.8 538 49.4
BcaC02g09793 Brassica carinata HOM05D006097 ORTHO05D008538 5.2e-150 535.4 550 49.3
Glyma.13G197200 Glycine max HOM05D006097 ORTHO05D008538 6.8e-150 535.0 561 48.7
Lj3g0013868 Lotus japonicus HOM05D006097 ORTHO05D008538 1.2e-149 534.3 543 49.9
Lalb_Chr19g0132421 Lupinus albus HOM05D006097 ORTHO05D008538 1.5e-149 533.9 536 50.6
Mapoly0021s0162 Marchantia polymorpha HOM05D006097 ORTHO05D008538 9.9e-149 531.2 529 49.1
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 1.7e-148 530.4 559 48.1
Sp5g06630 Schrenkiella parvula HOM05D006097 ORTHO05D008538 3.7e-148 529.3 530 49.8
BolC4t25143H Brassica oleracea HOM05D006097 ORTHO05D008538 4.9e-148 528.9 568 48.1
Pp3c20_1490 Physcomitrium patens HOM05D006097 ORTHO05D008538 4.9e-148 528.9 537 50.3
SalBow6G4726 Salvia bowleyana HOM05D006097 ORTHO05D008538 1.1e-147 527.7 556 47.8
AL5G37140 Arabidopsis lyrata HOM05D006097 ORTHO05D008538 1.4e-147 527.3 533 49.3
AUR62026861 Chenopodium quinoa HOM05D006097 ORTHO05D008538 7.1e-147 525.0 564 47.2
Carub.0005s2263 Capsella rubella HOM05D006097 ORTHO05D008538 1.7e-145 520.4 533 48.8
Thhalv10010237m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 2.3e-145 520.0 573 47.3
CARHR165960 Cardamine hirsuta HOM05D006097 ORTHO05D008538 8.6e-145 518.1 577 47.0
CSS0004732 Camellia sinensis var. sinensis HOM05D006097 ORTHO05D008538 3.3e-144 516.2 569 48.2
Sabra03G0146400 Salix brachista HOM05D006097 ORTHO05D008538 2.8e-143 513.1 575 44.3
CsaV3_5G036770 Cucumis sativus L. HOM05D006097 ORTHO05D008538 6.2e-143 511.9 539 48.4
arahy.Tifrunner.gnm1.ann1.HF4B4K Arachis hypogaea HOM05D006097 ORTHO05D008538 1.5e-141 507.3 620 44.8
Aqoxy2G00367 Aquilegia oxysepala HOM05D006097 ORTHO05D008538 7.1e-139 498.4 511 48.9
Phvul.011G206500 Phaseolus vulgaris HOM05D006097 ORTHO05D008538 2.7e-138 496.5 487 50.5
EL10Ac2g02801 Beta vulgaris HOM05D006097 ORTHO05D008538 7.8e-138 495.0 644 42.1
Eucgr.G03235 Eucalyptus grandis HOM05D006097 ORTHO05D008538 1.9e-136 490.3 566 45.9
ClCG05G026810 Citrullus lanatus HOM05D006097 ORTHO05D008538 5.6e-136 488.8 546 46.9
Solyc08g014470.4 Solanum lycopersicum HOM05D006097 ORTHO05D008538 3.8e-132 476.1 457 50.5
PGSC0003DMG400025223 Solanum tuberosum HOM05D006097 ORTHO05D008538 4.9e-132 475.7 460 50.9
Sc07g0002170 Simmondsia chinensis HOM05D006097 ORTHO05D008538 1.1e-128 464.5 461 50.1
DCAR_031244 Daucus carota HOM05D006097 ORTHO05D008538 4.3e-128 462.6 463 49.2
Hma1.2p1_1627F.1_g294440 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 6.2e-127 458.8 465 49.5
MELO3C012474.2 Cucumis melo HOM05D006097 ORTHO05D008538 1.9e-120 437.2 435 49.4
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 2.5e-120 436.8 539 45.6
QL04p017846 Quercus lobata HOM05D006097 ORTHO05D008538 9.6e-120 434.9 395 51.4
MBI19_g07612_MAGBIO Magnolia biondii HOM05D006097 ORTHO05D008538 6.9e-118 428.7 452 48.5
AT3G55850 Arabidopsis thaliana HOM05D006097 ORTHO05D008538 2.0e-117 427.2 452 48.5
unitig_52.g17390 Utricularia gibba HOM05D006097 ORTHO05D008538 2.9e-116 423.3 512 46.1
arahy.Tifrunner.gnm1.ann1.RMFD7W Arachis hypogaea HOM05D006097 ORTHO05D008538 9.3e-115 418.3 608 40.3
Hma1.2p1_1627F.1_g294450 Hydrangea macrophylla HOM05D006097 ORTHO05D008538 8.4e-108 395.2 465 45.2
Sed0002543 Sechium edule HOM05D006097 ORTHO05D008538 1.8e-105 387.5 520 41.0
Oeu048573.1 Olea europaea HOM05D006097 ORTHO05D008538 1.7e-100 370.9 323 52.3
Glyma.15G235400 Glycine max HOM05D006097 ORTHO05D008538 4.6e-98 362.8 486 39.7
AUR62037188 Chenopodium quinoa HOM05D006097 ORTHO05D008538 6.9e-94 349.0 397 45.3
TAR623G0406 Trochodendron aralioides HOM05D006097 ORTHO05D008538 5.9e-93 345.9 349 50.4
MCO06G284 Micromonas commoda HOM05D006097 ORTHO05D008538 1.4e-91 341.3 582 38.8
CDE06G1230 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 1.0e-89 335.1 354 48.0
Ca_26912_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 8.0e-82 308.9 296 48.0
Thhalv10010899m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 1.2e-74 285.0 268 49.3
Cre06.g279350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 1.3e-71 275.0 610 32.3
vmacro12697 Vaccinium macrocarpon HOM05D006097 ORTHO05D008538 7.7e-69 265.8 263 53.2
FAN10G0529 Fragaria x ananassa HOM05D006097 ORTHO05D008538 7.5e-64 249.2 411 36.3
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 6.3e-63 246.1 532 31.2
Cre07.g313350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 2.4e-62 244.2 609 31.7
Lj9A654G51 Lonicera japonica HOM05D006097 ORTHO05D008538 5.4e-62 243.0 236 49.6
SMO197G0087 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 2.7e-61 240.7 140 87.9
VMungo1127G1698 Vigna mungo HOM05D006097 ORTHO05D008538 2.8e-58 230.7 238 50.4
Zm00001eb140700 Zea mays HOM05D006097 ORTHO05D008538 2.8e-58 230.7 248 48.8
SMO125G0001 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 9.5e-51 205.7 141 75.9
VMungo1127G1548 Vigna mungo HOM05D006097 ORTHO05D008538 1.6e-50 204.9 185 51.9
Pp3s32_630 Physcomitrium patens HOM05D006097 ORTHO05D008538 2.3e-49 201.1 545 29.7
SMO005G0015 Selaginella moellendorffii HOM05D006097 ORTHO05D011308 2.6e-48 197.6 112 86.6
PRCOL_00006109 Prasinoderma coloniale HOM05D006097 ORTHO05D008538 4.9e-47 193.4 403 34.0
SMO274G0019 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 7.0e-46 189.5 111 82.0
SMO009G0029 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 1.6e-45 188.3 126 76.2
SMO212G0005 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 4.6e-45 186.8 128 74.2
TAR623G0702 Trochodendron aralioides HOM05D006097 ORTHO05D008538 3.9e-44 183.7 187 48.7
Lj9A654T55 Lonicera japonica HOM05D006097 ORTHO05D008538 9.8e-40 169.1 140 55.0
SMO077G0003 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 1.3e-23 115.5 65 89.2
SMO077G0007 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 6.4e-23 113.2 65 87.7
CDE06G0927 Ceratophyllum demersum HOM05D006097 ORTHO05D020391 1.9e-22 111.7 132 41.7
SMO012G0011 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 2.4e-22 111.3 65 86.2
SMO245G0008 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 3.2e-22 110.9 65 86.2
SMO281G0019 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 3.2e-22 110.9 99 67.7
SMO062G0005 Selaginella moellendorffii HOM05D003320 ORTHO05D003941 4.6e-21 107.1 97 68.0
Medtr1224s0010 Medicago truncatula HOM05D006097 ORTHO05D008538 1.3e-20 105.5 578 26.0
SMO199G0080 Selaginella moellendorffii HOM05D003320 ORTHO05D011006 1.1e-19 102.4 65 83.1
QL04p017840 Quercus lobata HOM05D006097 ORTHO05D008538 1.6e-18 98.6 125 41.6
DCAR_031243 Daucus carota HOM05D006097 ORTHO05D020391 8.1e-18 96.3 104 48.1
SEGI_33421 Sequoiadendron giganteum HOM05D006097 ORTHO05D020391 3.1e-17 94.4 104 49.0
SMO068G0001 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 1.9e-14 85.1 52 82.7
SMO149G0001 Selaginella moellendorffii HOM05D003320 ORTHO05D011006 1.9e-14 85.1 52 82.7
SMO347G0565 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 1.9e-14 85.1 52 82.7
SMO192G0013 Selaginella moellendorffii HOM05D009261 ORTHO05D011006 9.3e-14 82.8 52 80.8
Nn2g16009 Nelumbo nucifera HOM05D006097 ORTHO05D008538 1.6e-13 82.0 82 47.6
SMO300G0019 Selaginella moellendorffii HOM05D003320 ORTHO05D011006 1.3e-10 72.4 43 83.7
Ca_03883_v3 Cicer arietinum L. HOM05D006097 ORTHO05D008538 3.6e-10 70.9 97 42.3
CDE06G2151 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 6.9e-09 66.6 80 41.2
Carub.0002s2671 Capsella rubella HOM05D006097 ORTHO05D008538 2.0e-08 65.1 50 54.0
RcHm_v2.0_Chr6g0254811 Rosa chinensis HOM05D006097 ORTHO05D020391 3.4e-08 64.3 55 49.1
CDE06G1678 Ceratophyllum demersum HOM05D006097 ORTHO05D008538 3.8e-07 60.8 70 45.7


User provided reference genes

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