Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G1066 Selaginella moellendorffii HOM05D024584 ORTHO05D008218 2.2e-274 948.3 482 100.0
SMO367G0395 Selaginella moellendorffii HOM05D024584 ORTHO05D008218 5.8e-150 535.0 575 58.6
SMO275G0009 Selaginella moellendorffii HOM05D024584 ORTHO05D008218 2.2e-149 533.1 575 58.3
SMO275G0035 Selaginella moellendorffii HOM05D024584 ORTHO05D008218 9.6e-28 129.0 341 33.4
SMO367G1250 Selaginella moellendorffii HOM05D024584 ORTHO05D008218 5.8e-25 119.8 148 52.0
Mapoly0029s0145 Marchantia polymorpha HOM05D006924 ORTHO05D008218 1.5e-17 95.1 99 47.5
BcaB08g37076 Brassica carinata HOM05D006924 ORTHO05D008218 7.4e-12 76.3 60 53.3
Thhalv10013990m.g Eutrema salsugineum HOM05D006924 ORTHO05D008218 7.4e-12 76.3 60 53.3
Sp6g32290 Schrenkiella parvula HOM05D006924 ORTHO05D008218 7.4e-12 76.3 60 53.3
Pp3c19_15790 Physcomitrium patens HOM05D006924 ORTHO05D008218 9.7e-12 75.9 116 35.3
BolC9t59383H Brassica oleracea HOM05D006924 ORTHO05D008218 1.6e-11 75.1 60 51.7
CSS0004992 Camellia sinensis var. sinensis HOM05D006924 ORTHO05D008218 1.6e-11 75.1 57 54.4
CSS0024674 Camellia sinensis var. sinensis HOM05D006924 ORTHO05D008218 1.6e-11 75.1 57 54.4
AL6G21900 Arabidopsis lyrata HOM05D006924 ORTHO05D008218 2.2e-11 74.7 54 55.6
AT5G11270 Arabidopsis thaliana HOM05D006924 ORTHO05D008218 2.2e-11 74.7 54 55.6
Lsat_1_v5_gn_5_30481 Lactuca sativa HOM05D006924 ORTHO05D008218 2.2e-11 74.7 54 57.4
Aa31LG3G15920 Aethionema arabicum HOM05D006924 ORTHO05D008218 2.8e-11 74.3 60 51.7
CARHR201990 Cardamine hirsuta HOM05D006924 ORTHO05D008218 3.7e-11 73.9 60 48.3
Carub.0006s0974 Capsella rubella HOM05D006924 ORTHO05D008218 4.8e-11 73.6 54 53.7
THA.LOC104815037 Tarenaya hassleriana HOM05D006924 ORTHO05D008218 4.8e-11 73.6 62 50.0
ECA246G2052 Erigeron canadensis HOM05D000004 ORTHO05D000048 6.3e-11 73.2 75 45.3
Nitab4.5_0002007g0080 Nicotiana tabacum HOM05D006924 ORTHO05D008218 6.3e-11 73.2 55 58.2
Nitab4.5_0009676g0020 Nicotiana tabacum HOM05D006924 ORTHO05D008218 6.3e-11 73.2 55 58.2
VMungo1309G0550 Vigna mungo HOM05D006924 ORTHO05D008218 6.3e-11 73.2 54 51.9
MSTRG.1715 Avicennia marina HOM05D006924 ORTHO05D008218 8.2e-11 72.8 54 57.4
Rhsim02G0195700 Rhododendron simsii HOM05D006924 ORTHO05D008218 8.2e-11 72.8 55 50.9
Rhsim02G0198800 Rhododendron simsii HOM05D006924 ORTHO05D008218 8.2e-11 72.8 82 42.7
PGSC0003DMG400020785 Solanum tuberosum HOM05D006924 ORTHO05D008218 8.2e-11 72.8 54 59.3
Cc08_g00950 Coffea canephora HOM05D006924 ORTHO05D008218 1.1e-10 72.4 54 57.4
A10p26450 Brassica napus HOM05D006924 ORTHO05D008218 1.4e-10 72.0 100 37.0
BraA10t44702Z Brassica rapa HOM05D006924 ORTHO05D008218 1.4e-10 72.0 100 37.0
COL.COLO4_00196 Corchorus olitorius HOM05D006924 ORTHO05D008218 1.8e-10 71.6 54 55.6
Glyma.04G068000 Glycine max HOM05D006924 ORTHO05D008218 1.8e-10 71.6 54 50.0
Glyma.06G069700 Glycine max HOM05D006924 ORTHO05D008218 1.8e-10 71.6 54 50.0
Manes.03G016800 Manihot esculenta HOM05D006924 ORTHO05D008218 1.8e-10 71.6 54 53.7
Peaxi162Scf00073g01120 Petunia axillaris HOM05D006924 ORTHO05D008218 1.8e-10 71.6 55 56.4
Psat5g028520 Pisum sativum HOM05D006924 ORTHO05D008218 2.4e-10 71.2 54 53.7
Sopen08g016210 Solanum pennellii HOM05D006924 ORTHO05D008218 2.4e-10 71.2 54 57.4
CsaV3_3G046540 Cucumis sativus L. HOM05D006924 ORTHO05D008218 3.1e-10 70.9 56 50.0
Duzib187G1593 Durio zibethinus HOM05D006924 ORTHO05D008218 3.1e-10 70.9 54 53.7
RcHm_v2.0_Chr6g0298241 Rosa chinensis HOM05D006924 ORTHO05D008218 3.1e-10 70.9 52 53.8
unitig_26.g9317 Utricularia gibba HOM05D006924 ORTHO05D008218 3.1e-10 70.9 52 53.8
CDE04G2397 Ceratophyllum demersum HOM05D006924 ORTHO05D008218 4.1e-10 70.5 54 53.7
Sed0001141 Sechium edule HOM05D006924 ORTHO05D008218 4.1e-10 70.5 56 48.2
MELO3C003685.2 Cucumis melo HOM05D006924 ORTHO05D008218 5.3e-10 70.1 56 50.0
Phvul.009G094300 Phaseolus vulgaris HOM05D006924 ORTHO05D008218 5.3e-10 70.1 54 51.9
Solyc08g061140.3 Solanum lycopersicum HOM05D006924 ORTHO05D008218 5.3e-10 70.1 54 55.6
BcaC04g19245 Brassica carinata HOM05D006924 ORTHO05D008218 6.9e-10 69.7 100 36.0
Potri.006G251700 Populus trichocarpa HOM05D006924 ORTHO05D008218 6.9e-10 69.7 89 40.4
Sc09g0008380 Simmondsia chinensis HOM05D006924 ORTHO05D008218 6.9e-10 69.7 53 50.9
TPR.G31774 Trifolium pratense HOM05D006924 ORTHO05D008218 6.9e-10 69.7 54 51.9
GSVIVG01035827001 Vitis vinifera HOM05D006924 ORTHO05D008218 6.9e-10 69.7 54 53.7
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 9.0e-10 69.3 76 42.1
Thecc.09G150000 Theobroma cacao HOM05D006924 ORTHO05D008218 9.0e-10 69.3 54 51.9
TWI63G1089 Tripterygium wilfordii HOM05D006924 ORTHO05D008218 9.0e-10 69.3 54 50.0
FvH4_2g29450 Fragaria vesca HOM05D006924 ORTHO05D008218 1.2e-09 68.9 51 52.9
FAN20G0173 Fragaria x ananassa HOM05D006924 ORTHO05D008218 1.2e-09 68.9 51 52.9
FAN24G1985 Fragaria x ananassa HOM05D006924 ORTHO05D008218 1.2e-09 68.9 51 52.9
FAN27G0236 Fragaria x ananassa HOM05D006924 ORTHO05D008218 1.2e-09 68.9 51 52.9
Lj1g0004722 Lotus japonicus HOM05D006924 ORTHO05D008218 1.2e-09 68.9 59 44.1
Lalb_Chr23g0268731 Lupinus albus HOM05D006924 ORTHO05D008218 1.2e-09 68.9 56 50.0
Actinidia13248 Actinidia chinensis HOM05D006924 ORTHO05D008218 1.5e-09 68.6 55 49.1
Dinv15967 Davidia involucrata HOM05D006924 ORTHO05D008218 1.5e-09 68.6 54 51.9
Dinv18229 Davidia involucrata HOM05D006924 ORTHO05D008218 1.5e-09 68.6 54 51.9
SMO361G0012 Selaginella moellendorffii HOM05D047218 ORTHO05D376377 1.5e-09 68.6 155 33.5
TWI34G0486 Tripterygium wilfordii HOM05D006924 ORTHO05D008218 1.5e-09 68.6 69 42.0
Gohir.A08G236600 Gossypium hirsutum HOM05D006924 ORTHO05D008218 2.0e-09 68.2 54 50.0
Gohir.D08G257200 Gossypium hirsutum HOM05D006924 ORTHO05D008218 2.0e-09 68.2 54 50.0
Gorai.004G274200 Gossypium raimondii HOM05D006924 ORTHO05D008218 2.0e-09 68.2 54 50.0
Prupe.1G478200 Prunus persica HOM05D006924 ORTHO05D008218 2.0e-09 68.2 51 54.9
QL02p022351 Quercus lobata HOM05D006924 ORTHO05D008218 2.0e-09 68.2 54 51.9
SalBow1G5089 Salvia bowleyana HOM05D006924 ORTHO05D008218 2.0e-09 68.2 54 51.9
HanXRQChr08g0234821 Helianthus annuus HOM05D006924 ORTHO05D008218 2.6e-09 67.8 96 40.6
SMO361G0090 Selaginella moellendorffii HOM05D047218 ORTHO05D374505 2.6e-09 67.8 155 33.5
CAN.G6.23 Capsicum annuum HOM05D006924 ORTHO05D008218 3.4e-09 67.4 99 37.4
Cfa013171 Carpinus fangiana HOM05D006924 ORTHO05D008218 3.4e-09 67.4 54 51.9
Hund25749 Selenicereus undatus HOM05D006924 ORTHO05D008218 3.4e-09 67.4 98 39.8
Ah.12g064050 Amaranthus hybridus HOM05D006924 ORTHO05D008218 4.5e-09 67.0 55 49.1
arahy.Tifrunner.gnm1.ann1.748QI4 Arachis hypogaea HOM05D006924 ORTHO05D008218 4.5e-09 67.0 54 48.1
arahy.Tifrunner.gnm1.ann1.SMV5T8 Arachis hypogaea HOM05D006924 ORTHO05D008218 4.5e-09 67.0 54 48.1
Migut.E01789 Erythranthe guttata HOM05D006924 ORTHO05D008218 4.5e-09 67.0 54 48.1
Cpa.g.sc115.10 Carica papaya HOM05D006924 ORTHO05D008218 5.9e-09 66.6 96 39.6
Medtr3g107530 Medicago truncatula HOM05D006924 ORTHO05D008218 5.9e-09 66.6 54 48.1
Atru.chr7.2389 Acer truncatum HOM05D006924 ORTHO05D008218 7.7e-09 66.2 54 48.1
PSO170G6279 Papaver somniferum HOM05D006924 ORTHO05D008218 7.7e-09 66.2 54 50.0
PSO455G0271 Papaver somniferum HOM05D006924 ORTHO05D008218 7.7e-09 66.2 54 50.0
Sabra06G0196700 Salix brachista HOM05D006924 ORTHO05D008218 7.7e-09 66.2 97 38.1
Nn8g39393 Nelumbo nucifera HOM05D006924 ORTHO05D008218 1.0e-08 65.9 94 38.3
PSO455G0276 Papaver somniferum HOM05D006924 ORTHO05D008218 1.0e-08 65.9 54 51.9
Zm00001eb385620 Zea mays HOM05D006924 ORTHO05D008218 1.0e-08 65.9 54 46.3
Eucgr.C02804 Eucalyptus grandis HOM05D006924 ORTHO05D008218 1.3e-08 65.5 99 39.4
Aqoxy7G02106 Aquilegia oxysepala HOM05D006924 ORTHO05D008218 1.7e-08 65.1 60 43.3
DCAR_001517 Daucus carota HOM05D006924 ORTHO05D008218 1.7e-08 65.1 100 39.0
AUR62030642 Chenopodium quinoa HOM05D006924 ORTHO05D008218 2.2e-08 64.7 54 46.3
FAN15G1620 Fragaria x ananassa HOM05D006924 ORTHO05D008218 2.2e-08 64.7 51 49.0
TAR626G1567 Trochodendron aralioides HOM05D006924 ORTHO05D008218 2.2e-08 64.7 63 49.2
vmacro11153 Vaccinium macrocarpon HOM05D006924 ORTHO05D008218 2.2e-08 64.7 54 46.3
ATR0564G047 Amborella trichopoda HOM05D006924 ORTHO05D008218 2.9e-08 64.3 54 51.9
Ciclev10010768m.g Citrus clementina HOM05D006924 ORTHO05D008218 2.9e-08 64.3 54 46.3
EL10Ac2g02609 Beta vulgaris HOM05D006924 ORTHO05D008218 3.8e-08 63.9 53 49.1
MD08G1147000 Malus domestica HOM05D006924 ORTHO05D008218 3.8e-08 63.9 51 51.0
Ca_15720_v3 Cicer arietinum L. HOM05D006924 ORTHO05D008218 6.5e-08 63.2 88 37.5
CANSAT21G2575 Cannabis sativa HOM05D006924 ORTHO05D008218 1.9e-07 61.6 51 49.0
MBI04_g07630_MAGBIO Magnolia biondii HOM05D006924 ORTHO05D008218 2.5e-07 61.2 54 50.0
Os06g0601000 Oryza sativa ssp. japonica HOM05D006924 ORTHO05D008218 2.5e-07 61.2 110 36.4
HPP92_003651 Vanilla planifolia HOM05D000347 ORTHO05D001997 2.5e-07 61.2 104 40.4
AUR62024897 Chenopodium quinoa HOM05D006924 ORTHO05D008218 4.2e-07 60.5 55 41.8
ClCG05G017060 Citrullus lanatus HOM05D006924 ORTHO05D008218 9.4e-07 59.3 73 38.4


User provided reference genes

Program Settings