Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G0870 Selaginella moellendorffii HOM05D005148 ORTHO05D006218 3.6e-67 258.1 127 100.0
Mapoly0068s0031 Marchantia polymorpha HOM05D005148 ORTHO05D006218 2.2e-48 195.7 158 63.9
Pp3c19_14080 Physcomitrium patens HOM05D005148 ORTHO05D006218 2.1e-46 189.1 158 62.7
MD03G1208700 Malus domestica HOM05D005148 ORTHO05D006218 7.8e-46 187.2 157 61.8
MD11G1223400 Malus domestica HOM05D005148 ORTHO05D006218 7.8e-46 187.2 157 62.4
Cpa.g.sc97.43 Carica papaya HOM05D005148 ORTHO05D006218 1.3e-45 186.4 158 59.5
AagrBONN_evm.TU.Sc2ySwM_362.1748 Anthoceros agrestis HOM05D005148 ORTHO05D006218 2.3e-45 185.7 158 60.1
CBR_g38419 Chara braunii HOM05D005148 ORTHO05D006218 2.3e-45 185.7 159 61.6
Sc03g0008800 Simmondsia chinensis HOM05D005148 ORTHO05D006218 3.0e-45 185.3 157 60.5
PGR042G3618 Punica granatum HOM05D005148 ORTHO05D006218 3.9e-45 184.9 157 61.8
ATR0752G127 Amborella trichopoda HOM05D005148 ORTHO05D006218 6.6e-45 184.1 157 59.9
Eucgr.F00968 Eucalyptus grandis HOM05D005148 ORTHO05D006218 6.6e-45 184.1 157 61.8
CDE05G0897 Ceratophyllum demersum HOM05D005148 ORTHO05D006218 8.7e-45 183.7 157 59.9
CiPaw.11G186500 Carya illinoinensis HOM05D005148 ORTHO05D006218 1.1e-44 183.3 157 60.5
CAN.G1781.10 Capsicum annuum HOM05D005148 ORTHO05D006218 1.9e-44 182.6 157 59.9
Ciclev10008061m.g Citrus clementina HOM05D005148 ORTHO05D006218 1.9e-44 182.6 157 60.5
Dinv22285 Davidia involucrata HOM05D005148 ORTHO05D006218 1.9e-44 182.6 155 60.0
Solyc10g006390.3 Solanum lycopersicum HOM05D005148 ORTHO05D006218 1.9e-44 182.6 157 59.9
Sopen10g002340 Solanum pennellii HOM05D005148 ORTHO05D006218 1.9e-44 182.6 157 59.9
Ah.04g165650 Amaranthus hybridus HOM05D001748 ORTHO05D001759 2.5e-44 182.2 158 58.2
Duzib268G1307 Durio zibethinus HOM05D005148 ORTHO05D006218 4.3e-44 181.4 157 59.9
Nitab4.5_0005048g0010 Nicotiana tabacum HOM05D005148 ORTHO05D006218 4.3e-44 181.4 158 59.5
Rhsim04G0000500 Rhododendron simsii HOM05D005148 ORTHO05D006218 4.3e-44 181.4 157 58.6
Thecc.07G044600 Theobroma cacao HOM05D005148 ORTHO05D006218 4.3e-44 181.4 157 59.9
GSVIVG01030604001 Vitis vinifera HOM05D005148 ORTHO05D006218 4.3e-44 181.4 157 59.9
EL10Ac4g07904 Beta vulgaris HOM05D005148 ORTHO05D006218 5.6e-44 181.0 157 59.9
Cc05_g13470 Coffea canephora HOM05D005148 ORTHO05D006218 5.6e-44 181.0 157 57.3
CsaV3_3G023250 Cucumis sativus L. HOM05D005148 ORTHO05D006218 5.6e-44 181.0 157 61.1
Gohir.A13G139300 Gossypium hirsutum HOM05D005148 ORTHO05D006218 5.6e-44 181.0 157 59.2
Nn1g07082 Nelumbo nucifera HOM05D005148 ORTHO05D006218 5.6e-44 181.0 157 60.5
Potri.001G420400 Populus trichocarpa HOM05D005148 ORTHO05D006218 5.6e-44 181.0 157 59.2
COL.COLO4_09623 Corchorus olitorius HOM05D005148 ORTHO05D006218 7.3e-44 180.6 159 58.5
QL03p062207 Quercus lobata HOM05D005148 ORTHO05D006218 7.3e-44 180.6 157 59.9
QL03p062820 Quercus lobata HOM05D005148 ORTHO05D006218 7.3e-44 180.6 157 59.9
QL06p002269 Quercus lobata HOM05D005148 ORTHO05D006218 7.3e-44 180.6 157 59.9
QL08p012200 Quercus lobata HOM05D005148 ORTHO05D006218 7.3e-44 180.6 157 59.9
HanXRQChr08g0235221 Helianthus annuus HOM05D005148 ORTHO05D006218 9.6e-44 180.3 157 58.0
PGSC0003DMG400014426 Solanum tuberosum HOM05D005148 ORTHO05D006218 9.6e-44 180.3 157 59.2
CSS0036538 Camellia sinensis var. sinensis HOM05D005148 ORTHO05D006218 1.3e-43 179.9 157 58.6
Manes.03G127500 Manihot esculenta HOM05D005148 ORTHO05D006218 1.3e-43 179.9 157 58.6
Nitab4.5_0001393g0210 Nicotiana tabacum HOM05D005148 ORTHO05D006218 1.3e-43 179.9 157 59.9
Zm00001eb286040 Zea mays HOM05D005148 ORTHO05D006218 1.3e-43 179.9 157 57.3
Atru.chr2.3744 Acer truncatum HOM05D005148 ORTHO05D006218 2.8e-43 178.7 157 60.5
Atru.chr2.3757 Acer truncatum HOM05D005148 ORTHO05D006218 2.8e-43 178.7 157 60.5
AUR62008441 Chenopodium quinoa HOM05D005148 ORTHO05D006218 3.6e-43 178.3 157 58.6
Prupe.4G208000 Prunus persica HOM05D005148 ORTHO05D006218 4.8e-43 177.9 157 59.2
Sed0006852 Sechium edule HOM05D005148 ORTHO05D006218 4.8e-43 177.9 157 59.2
TAR626G1940 Trochodendron aralioides HOM05D005148 ORTHO05D006218 4.8e-43 177.9 157 59.9
VMungo0540G1829 Vigna mungo HOM05D005148 ORTHO05D006218 6.2e-43 177.6 158 58.9
AL3G34380 Arabidopsis lyrata HOM05D005148 ORTHO05D006218 8.1e-43 177.2 157 59.2
AT3G20550 Arabidopsis thaliana HOM05D005148 ORTHO05D006218 8.1e-43 177.2 157 59.2
HPP92_019925 Vanilla planifolia HOM05D005148 ORTHO05D006218 8.1e-43 177.2 158 58.9
Carub.0003s2052 Capsella rubella HOM05D005148 ORTHO05D006218 1.1e-42 176.8 157 58.6
Migut.H01845 Erythranthe guttata HOM05D005148 ORTHO05D006218 1.1e-42 176.8 157 58.0
CDE02G2943 Ceratophyllum demersum HOM05D005148 ORTHO05D006218 1.4e-42 176.4 151 59.6
Cfa020393 Carpinus fangiana HOM05D001748 ORTHO05D001759 1.8e-42 176.0 154 59.7
Ca_14709_v3 Cicer arietinum L. HOM05D005148 ORTHO05D006218 1.8e-42 176.0 157 58.6
Aa31LG8G7350 Aethionema arabicum HOM05D005148 ORTHO05D006218 2.4e-42 175.6 140 60.7
Duzib213G0030 Durio zibethinus HOM05D005148 ORTHO05D006218 2.4e-42 175.6 157 58.0
Glyma.09G101200 Glycine max HOM05D005148 ORTHO05D006218 2.4e-42 175.6 157 58.6
Psat5g183400 Pisum sativum HOM05D005148 ORTHO05D006218 2.4e-42 175.6 157 58.6
Hund14204 Selenicereus undatus HOM05D005148 ORTHO05D006218 2.4e-42 175.6 150 58.0
SEGI_03914 Sequoiadendron giganteum HOM05D005148 ORTHO05D006218 3.1e-42 175.3 158 58.2
TPR.G13552 Trifolium pratense HOM05D005148 ORTHO05D006218 3.1e-42 175.3 157 58.0
arahy.Tifrunner.gnm1.ann1.ICWX02 Arachis hypogaea HOM05D005148 ORTHO05D006218 4.0e-42 174.9 157 58.0
arahy.Tifrunner.gnm1.ann1.XKJ78D Arachis hypogaea HOM05D005148 ORTHO05D006218 4.0e-42 174.9 157 58.0
Os05g0545600 Oryza sativa ssp. japonica HOM05D005148 ORTHO05D006218 4.0e-42 174.9 157 58.0
Atru.chr2.3269 Acer truncatum HOM05D005148 ORTHO05D006218 5.3e-42 174.5 157 59.2
CANSAT54G0232 Cannabis sativa HOM05D005148 ORTHO05D006218 5.3e-42 174.5 157 58.6
CARHR096320 Cardamine hirsuta HOM05D005148 ORTHO05D006218 6.9e-42 174.1 157 58.0
ECA246G0930 Erigeron canadensis HOM05D005148 ORTHO05D006218 6.9e-42 174.1 157 57.3
SGA_v2.0_scaffold115G32129 Striga asiatica HOM05D005148 ORTHO05D006218 9.0e-42 173.7 157 56.1
FAN16G3277 Fragaria x ananassa HOM05D005148 ORTHO05D006218 1.2e-41 173.3 158 58.2
Phvul.006G037500 Phaseolus vulgaris HOM05D005148 ORTHO05D006218 1.2e-41 173.3 157 58.6
Glyma.18G102900 Glycine max HOM05D005148 ORTHO05D006218 1.5e-41 172.9 157 58.0
BcaB04g19113 Brassica carinata HOM05D005148 ORTHO05D006218 2.0e-41 172.6 157 58.6
BcaC01g03550 Brassica carinata HOM05D005148 ORTHO05D006218 2.0e-41 172.6 157 58.0
BolC3t17407H Brassica oleracea HOM05D005148 ORTHO05D006218 2.0e-41 172.6 157 58.0
Lalb_Chr20g0114191 Lupinus albus HOM05D005148 ORTHO05D006218 2.0e-41 172.6 157 57.3
Medtr3g049440 Medicago truncatula HOM05D005148 ORTHO05D006218 2.0e-41 172.6 157 57.3
Medtr5g081620 Medicago truncatula HOM05D005148 ORTHO05D006218 2.0e-41 172.6 141 62.4
FAN21G2996 Fragaria x ananassa HOM05D005148 ORTHO05D006218 2.6e-41 172.2 158 57.6
Lsat_1_v5_gn_5_13800 Lactuca sativa HOM05D005148 ORTHO05D006218 2.6e-41 172.2 157 56.1
EL10Ac5g11049 Beta vulgaris HOM05D005148 ORTHO05D006218 3.4e-41 171.8 175 53.7
A03p41800 Brassica napus HOM05D005148 ORTHO05D006218 3.4e-41 171.8 157 58.0
C03p51180 Brassica napus HOM05D005148 ORTHO05D006218 3.4e-41 171.8 157 58.0
BraA03t13333Z Brassica rapa HOM05D005148 ORTHO05D006218 3.4e-41 171.8 157 58.0
MSTRG.12962 Avicennia marina HOM05D005148 ORTHO05D006218 4.5e-41 171.4 158 57.0
Hma1.2p1_0938F.1_g239180 Hydrangea macrophylla HOM05D005148 ORTHO05D006218 4.5e-41 171.4 157 57.3
Sp3g18560 Schrenkiella parvula HOM05D005148 ORTHO05D006218 5.8e-41 171.0 157 56.7
Lj6g0026690 Lotus japonicus HOM05D005148 ORTHO05D006218 7.6e-41 170.6 157 57.3
FvH4_3g22101 Fragaria vesca HOM05D005148 ORTHO05D006218 1.3e-40 169.9 157 57.3
PSO541G0017 Papaver somniferum HOM05D005148 ORTHO05D006218 1.3e-40 169.9 157 58.0
PSO675G4432 Papaver somniferum HOM05D005148 ORTHO05D006218 1.3e-40 169.9 157 58.0
RcHm_v2.0_Chr5g0037921 Rosa chinensis HOM05D005148 ORTHO05D006218 2.2e-40 169.1 157 57.3
AUR62021649 Chenopodium quinoa HOM05D005148 ORTHO05D006218 3.8e-40 168.3 172 53.5
RcHm_v2.0_Chr4g0405041 Rosa chinensis HOM05D005148 ORTHO05D006218 1.1e-39 166.8 157 56.1
Potri.011G136102 Populus trichocarpa HOM05D005148 ORTHO05D006218 4.6e-38 161.4 141 59.6
TWI38G1498 Tripterygium wilfordii HOM05D005148 ORTHO05D006218 6.0e-38 161.0 108 73.1
Aqoxy1G03309 Aquilegia oxysepala HOM05D005148 ORTHO05D006218 1.0e-37 160.2 108 71.3
Aqoxy3G00120 Aquilegia oxysepala HOM05D005148 ORTHO05D006218 1.0e-37 160.2 108 71.3
Dinv40732 Davidia involucrata HOM05D005148 ORTHO05D006218 1.0e-37 160.2 108 70.4
Gohir.D13G144100 Gossypium hirsutum HOM05D005148 ORTHO05D006218 1.0e-37 160.2 108 70.4
Nn1g03595 Nelumbo nucifera HOM05D005148 ORTHO05D006218 1.8e-37 159.5 108 69.4
DCAR_019897 Daucus carota HOM05D005148 ORTHO05D006218 3.0e-37 158.7 144 55.6
Gorai.013G161200 Gossypium raimondii HOM05D005148 ORTHO05D006218 3.9e-37 158.3 107 70.1
Aqoxy5G02091 Aquilegia oxysepala HOM05D005148 ORTHO05D006218 1.1e-36 156.8 162 51.2
FAN05G2630 Fragaria x ananassa HOM05D005148 ORTHO05D006218 1.5e-36 156.4 151 53.0
FvH4_6g43590 Fragaria vesca HOM05D005148 ORTHO05D006218 1.6e-35 152.9 151 52.3
FAN09G4771 Fragaria x ananassa HOM05D005148 ORTHO05D006218 1.6e-35 152.9 151 51.7
Oeu007601.1 Olea europaea HOM05D005148 ORTHO05D006218 3.7e-35 151.8 141 53.2
FAN14G1203 Fragaria x ananassa HOM05D005148 ORTHO05D006218 2.6e-33 145.6 151 51.0
Manes.15G074502 Manihot esculenta HOM05D005148 ORTHO05D006218 3.4e-33 145.2 108 64.8
Haze_06035 Corylus avellana HOM05D001748 ORTHO05D006218 4.9e-32 141.4 157 51.6
MCO09G834 Micromonas commoda HOM05D005148 ORTHO05D006218 1.0e-29 133.7 158 47.5
Actinidia10720 Actinidia chinensis HOM05D005148 ORTHO05D006218 6.2e-27 124.4 108 55.6
Peaxi162Scf00032g02417 Petunia axillaris HOM05D005148 ORTHO05D006218 1.2e-25 120.2 157 47.1
Cre09.g390430 Chlamydomonas reinhardtii HOM05D005148 ORTHO05D006218 3.4e-25 118.6 165 41.8
PRCOL_00003554 Prasinoderma coloniale HOM05D005148 ORTHO05D006218 1.6e-22 109.8 142 45.1
Haze_09642 Corylus avellana HOM05D005148 ORTHO05D006218 4.6e-22 108.2 94 56.4
MELO3C030736.2 Cucumis melo HOM05D005148 ORTHO05D006218 1.0e-21 107.1 93 57.0
Rhsim04G0001600 Rhododendron simsii HOM05D005148 ORTHO05D006218 3.0e-21 105.5 148 44.6
unitig_22.g5751 Utricularia gibba HOM05D005148 ORTHO05D006218 1.9e-20 102.8 138 46.4
Thhalv10011119m.g Eutrema salsugineum HOM05D005148 ORTHO05D006218 3.7e-19 98.6 84 59.5
vmacro09737 Vaccinium macrocarpon HOM05D005148 ORTHO05D006218 3.7e-19 98.6 132 50.0
Thhalv10024125m.g Eutrema salsugineum HOM05D005148 ORTHO05D006218 6.3e-19 97.8 84 58.3
FAN11G3177 Fragaria x ananassa HOM05D005148 ORTHO05D006218 1.5e-17 93.2 158 39.9
ClCG05G014480 Citrullus lanatus HOM05D005148 ORTHO05D006218 4.5e-17 91.7 186 37.1
Cfa025954 Carpinus fangiana HOM05D005148 ORTHO05D006218 2.9e-16 89.0 117 46.2
MD06G1125500 Malus domestica HOM05D005148 ORTHO05D006218 4.2e-15 85.1 123 39.0
AT2G24410 Arabidopsis thaliana HOM05D005148 ORTHO05D006218 1.2e-14 83.6 65 60.0
C01p18700 Brassica napus HOM05D005148 ORTHO05D006218 1.0e-13 80.5 52 69.2
Haze_09643 Corylus avellana HOM05D005148 ORTHO05D006218 1.8e-13 79.7 63 68.3
MELO3C018081.2 Cucumis melo HOM05D005148 ORTHO05D006218 3.9e-13 78.6 63 68.3
Sabra16G0285400 Salix brachista HOM05D005148 ORTHO05D006218 3.3e-12 75.5 144 41.7
TPR.G40522 Trifolium pratense HOM05D005148 ORTHO05D006218 1.8e-10 69.7 48 64.6
TPR.G13540 Trifolium pratense HOM05D005148 ORTHO05D006218 3.1e-10 68.9 48 66.7
CARHR263780 Cardamine hirsuta HOM05D005170 ORTHO05D006985 7.2e-07 57.8 92 35.9
SalBow7G4088 Salvia bowleyana HOM05D005148 ORTHO05D006218 7.2e-07 57.8 118 35.6
Carub.0007s3703 Capsella rubella HOM05D005170 ORTHO05D006985 2.1e-06 56.2 92 34.8
Sp7g03070 Schrenkiella parvula HOM05D005170 ORTHO05D006985 2.1e-06 56.2 95 34.7
AL7G51600 Arabidopsis lyrata HOM05D005170 ORTHO05D006985 3.6e-06 55.5 65 41.5
Lsat_1_v5_gn_5_38280 Lactuca sativa HOM05D005148 ORTHO05D006218 3.6e-06 55.5 40 55.0
QL02p064873 Quercus lobata HOM05D005170 ORTHO05D006985 4.7e-06 55.1 72 38.9
A04p11710 Brassica napus HOM05D005170 ORTHO05D006985 7.9e-06 54.3 65 41.5
BraA04t16838Z Brassica rapa HOM05D005170 ORTHO05D006985 7.9e-06 54.3 65 41.5


User provided reference genes

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